Csor.00g247900 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTTATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGGTTCGTCTTTTCCTTGATTTTCTTTTTTCCGTCCGAATTCTTTTCATGTTTGTATAATCTGTCGTTCTTACGTTTCAACCTTAAACTTGTCGTTAATAGTTTAATTTTGAGCTTTACCTCAAATTTCGGACTGTAGTGCGTTTCAGTTTTTCGTTGACCAAACTTCAGAATGCAATATAGCCAACTGAGCTTCATTAAGTTCACGATATTGGATTGGAGACGTGGCGATTTGATGATTAGTTTAACGACGTGATGGAATCAATCTGGAGATCTGTTGATATTTTCATTCTTAATATCTAAGAATTTGCATTGTTATAGTTGTTGTCCGTCCAATCTTGTCAACGTGTTTGTTTTGACACAATCGTGTTTCAATCATGTATGTAATGTTCAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAGTACGTAATTTCTCTTGCTCGGTTCAAGGTTAAAAGTGCATAATTCGGTTCAAATAACTCATCCTGTACGATTGGTTATAATTCTTATGACTATCTTGGGGATCATGTTCACTTGCTTTTTCGTTCGTGTAGACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCTAATTGTGAGACTAATTAATTGATCCCCAAAATCTCATATCTTCCTTCAATTTACTTTTTCTGTTGTTTTTTTTTTTTTTTTTACTGGTGCGTTGTCAAAAGAATATTGTGAAATGCTTTATAAAACTTCTTATCGATAACCGGTAGGCAAACAATTTTGCTCTTTTAGTATGGTAAGGTTTGTTATATGAATCATCGATGCACAAGCAGTTCTTGAAGATATTGCTTGAAGTATTGACTGCTATGTGATATAGTATTGTCAGGATTTGGAGCTTAAGCAACCATTTAGCTATTGACCATTGAAAAGAATGGTTCTCAAATTTAAGAAACCATGGTTTATAGGCTCTAAACTAACAGTAACACGGCTGTGTATGCTGGTAAATGTGATTGCCACTGCTTCCAATTGAACTGGTTATTTATGGATGCAAATTCATCCCAGACGGTGCTCATACTGCAAGTCATGATTTCGTATTATGAATTATGGTCCTATGAATTGGGTGGAGTCCCTTGAATGACCTCGGATCTGTAGTATTCTTCTGCATGGGTGGGAACCGAAGAAATTTTATTAATGTCATAGCAAGTTGAAAGCAACTTCTCATTGGTAAAATTGGTCTTATTCTGGGAATCATGTTGAACGTAGGCATCAGCCCAAGCAAATTGGAGAATTTGATCTGGTCTATTGTGAAGTATTAAAAGCACTTCATGATTGAAGTGTTGGCATCCAACTAATACAGGATTTGAGTTTGACTTAGATTAACTCATGTCAGTATGTTATGACATGCTTTTAATCCCTCGAATCTAACATTGCCCAAAATTGTTCCTGAAATATTGTATGTAGTTGTAGCTTTTGACTGCCATGTTTTCATGTTGGTGTCATGTTGTGTGTTTATGTATCTATTTCTTTGGTTACATTAATTCCCTTTTTTGGCCCTTATTAGATACCATTTTACAGTTACTTGTGAAGCACTGATAATATATGGGATTTACCAAGGTTATCTGTTTTCAATAATTTGTTTCAAGTTTTCCAACTAGCGAGAGTAATGTTTCGTGAACTTGTATTTTTCTTTTGTCTAAAATTCAATATCACTCAAAATGCATCTTGAAGATAAATTGTTATAAAAGAACAGTAAAATAGCCATATTTATCAAGATAGCGTAGCCTTGACTTCTGTTCATTTTATTTCAGTCGTTTTCTGCCATTAATTGCTTCCCATCCCTTCAGTATTACTTAATAAGATGCTTCAGATTACACCTTAGATTCTATTTAAATGACATTGCTTCCAGATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTATTATATTATTACTGAATTTTCTAATAAGTGTGTGTTCATATGTTGGATGTTTTCTTAAGTAATTTTCTAATAAGTCGTCATATGGTTTACATAGGTTTTGATATATATTGTTCTGGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGTAATCACTCTCACCGCCAGCAGGATTTCTGTAGAACAATTATTATAGAGAAATGTCATTTCATTTTAAATTTTAACTATTACTTCTTGATACTCTCCCTTCTGCAGGAAGGTTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTAGAACAATAATCACTTCTCAATTACCTGCAAATAACTCTTAGATCATTATGCGTTTCTTTTATCCCTTGAGAATAACATACCTGATACCATCACTAACACCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTTCGAAACAAGATGTTTATATGGTTACCGTATCTGGTTTATGAAGGAAATGGTTTTAGGATAGAATTAGTAATGTGATTAGGGTCTTAAGTACATAGTAGCACTTAGCTAAAGGAGTTGTTTTGAGGGTTTGTTACAAATAGAGTGAGTGAGAATGGTTAAAGGTAGGCAGTCGTTTAGTAGAATTTAGGCTTAAGTTAGTATGCTCGAGGTTGAACGCTCCAACTACCTCAAATACTTGGGGAGTTATATTGTAATTCCGTTATCTTTTTTCTTTCTATATATCTAGGTTCTATCGGCTAGCCACAATCACGTCTGCACGTAATGAGAATATATGAGCATATGATGATTCTTAGCTCTTCTCAATGATGAACTGCAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTAGCCAATTAA ATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTTATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCTAATTATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTTTGATATATATTGTTCTGGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGAAGGTTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTAGCCAATTAA ATGGAAGCGGAAGAAATCGTAGAGCATCGGAACTCGATTGTGGCTCCGTCCATTTTTTTTATCGTCATTGCTTTTCAGTTTCTCGCCGGATGGCTGGATCACCTAAAGAAGCGAGGTTCCAACAACCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGATCGGCTGCCGCTAAGGAGAAGGAACTGGCTAATTATCAAGAATCACGTAGTAAGAAGATCAAGTCGTCATATGGTTTATATAGTCGAGTACTGCTGATATCAAAGGTTTTGATATATATTGTTCTGGTTTGCTGGTTTTGGAGGGCTTCTGTTGCCACTGTGCCCCATCACCTTGTACAGCCATTTGGAAGGTTTTTATCTTGGAGGGCTGGAGGTACCGTAAATGATTACGTGAAGGTTGGAATCATACCTTGGTTGATACTATCGACAAGGGTTAGCAAATTTGTATGTCGAGTAGCCAATTAA MEAEEIVEHRNSIVAPSIFFIVIAFQFLAGWLDHLKKRGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRSAAAKEKELANYQESRSKKIKSSYGLYSRVLLISKVLIYIVLVCWFWRASVATVPHHLVQPFGRFLSWRAGGTVNDYVKVGIIPWLILSTRVSKFVCRVAN Homology
BLAST of Csor.00g247900 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 1.5e-52 Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 0
BLAST of Csor.00g247900 vs. NCBI nr
Match: KAG6596276.1 (hypothetical protein SDJN03_09456, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027827.1 hypothetical protein SDJN02_09004 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 342 bits (878), Expect = 1.67e-118 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0
BLAST of Csor.00g247900 vs. NCBI nr
Match: XP_022945757.1 (uncharacterized protein LOC111449636 [Cucurbita moschata]) HSP 1 Score: 340 bits (872), Expect = 1.37e-117 Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 0
BLAST of Csor.00g247900 vs. NCBI nr
Match: XP_023539852.1 (uncharacterized protein LOC111800404 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 338 bits (868), Expect = 5.60e-117 Identity = 175/177 (98.87%), Postives = 176/177 (99.44%), Query Frame = 0
BLAST of Csor.00g247900 vs. NCBI nr
Match: XP_022971588.1 (uncharacterized protein LOC111470261 [Cucurbita maxima]) HSP 1 Score: 335 bits (859), Expect = 1.32e-115 Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0
BLAST of Csor.00g247900 vs. NCBI nr
Match: XP_008448478.1 (PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo]) HSP 1 Score: 303 bits (776), Expect = 6.36e-103 Identity = 155/177 (87.57%), Postives = 167/177 (94.35%), Query Frame = 0
BLAST of Csor.00g247900 vs. ExPASy TrEMBL
Match: A0A6J1G1T6 (uncharacterized protein LOC111449636 OS=Cucurbita moschata OX=3662 GN=LOC111449636 PE=3 SV=1) HSP 1 Score: 340 bits (872), Expect = 6.65e-118 Identity = 176/177 (99.44%), Postives = 176/177 (99.44%), Query Frame = 0
BLAST of Csor.00g247900 vs. ExPASy TrEMBL
Match: A0A6J1I7A9 (uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261 PE=3 SV=1) HSP 1 Score: 335 bits (859), Expect = 6.38e-116 Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = 0
BLAST of Csor.00g247900 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1) HSP 1 Score: 303 bits (776), Expect = 3.08e-103 Identity = 155/177 (87.57%), Postives = 167/177 (94.35%), Query Frame = 0
BLAST of Csor.00g247900 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1) HSP 1 Score: 303 bits (775), Expect = 4.08e-103 Identity = 155/177 (87.57%), Postives = 167/177 (94.35%), Query Frame = 0
BLAST of Csor.00g247900 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1) HSP 1 Score: 293 bits (750), Expect = 3.02e-99 Identity = 152/176 (86.36%), Postives = 161/176 (91.48%), Query Frame = 0
BLAST of Csor.00g247900 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 207.2 bits (526), Expect = 1.1e-53 Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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