Csor.00g247750 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g247750
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr06: 881553 .. 882856 (+)
RNA-Seq ExpressionCsor.00g247750
SyntenyCsor.00g247750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCAATGTCTATCAGAAATAAAGGCAGTGCCAAGGTAGATTGGTACTGACATATAGTTCATTTGAGAGCTTTTTTCTATCTATTTGCAAGCACCGTATCTTTTAATTCGTAGATATGAGTGACAAGGCCTATAGGGCACAAATTGGTTTCATTGATGCATATAGGTTGTGGTAATTTTCAAAAAGAGAGACATCTTTCTATTCACGTAAGTTTTTCAGTTTCTAAACCCTAAAAATTAACCACCATTACCAAAATGAAACTGCTGATTCCATCACCAGTCAATGTTTTTCGGTTACTTGGATATCTTTGATAAATGAGGAATATTGCCTTTTAATTCTTCTGAAGTGAGAACTTTTTTTCTTTTGCCCCTCTATTTTCTTCCCTTGCAGGCTACTGAGGAGAGGTACAAAGACAAAGGTGCATATATTGTTCTATAACATCCGAATTTTGATGTTCCAATCATACATAGTTTTGAAGCCATTACTCCACGACCAAAGGTACGAAGCCATTACTTTGTTTAGAAGATTATTTTCTGAGTTGGCAAATCTTTCCTACTATTTCCTTCACAATTATGGTGGTGAATTTTACTTAAATATATTAAAATCAGATATTTAAATGAGTCATGTGCTTGCATCACAGACTACTTATGGCTTGCCACCATCAACCAATAGCTAAAGAAATCCTAATACATGGATCGGAACGATGTTTTTTAATAATTATAATGATGTAAAAGTTAAAGAGAGAAATTTAAAAAAATTTATTTTTGTTAACATTTGGTCCATAGAACTCAAGGACACAAATGTACAACCTATAGAATAAAACATTTCCAAGAGCTAATACTTATTCTATTCTGTGGGGCCTTTGGTTAGAGAGAAACAATAGGAGATTGAGAGATCTAGTGAAGAGATGTGTTCTCTTGTGGGGTTTTAAGCTTCTCTCTGTAATTATTCTTTTGATCTCATTGTGTTAGATCGGAGTCCCATGGCTTGGGTTGTCTTTTTGTGTGTCTTCTGTATTCACCTTGAGTAGGAGTGAAGCTTTTCAGATGCTCTTAAGGGTAGGAGTTGTCATAGATGGCCTTTGTTGGAGGCGGGGATGTGTTGTCCCATTCCACCTCGCATTTATAGCCCATTTTCTTGTGTTATAATGTAGGAAAAGAAGTGTTGTGCTCTGTCAATCACTTGATAAGGCCACCGAAAATGAAGTTAACCGTTGCCTCTTTATATGCAGGTCAAATGTCATTGATTCCGACGAAGAATTAGATTTGGCAACTATGGCAACAATGGCAACTCATCCATGA

mRNA sequence

ATGGACCAATGTCTATCAGAAATAAAGGCAGTGCCAAGGCTACTGAGGAGAGGTACAAAGACAAAGGTGCATATATTGTTCTATAACATCCGAATTTTGATGTTCCAATCATACATAGTTTTGAAGCCATTACTCCACGACCAAAGGAAAAGAAGTGTTGTGCTCTGTCAATCACTTGATAAGGCCACCGAAAATGAAGTTAACCGTTGCCTCTTTATATGCAGGTCAAATGTCATTGATTCCGACGAAGAATTAGATTTGGCAACTATGGCAACAATGGCAACTCATCCATGA

Coding sequence (CDS)

ATGGACCAATGTCTATCAGAAATAAAGGCAGTGCCAAGGCTACTGAGGAGAGGTACAAAGACAAAGGTGCATATATTGTTCTATAACATCCGAATTTTGATGTTCCAATCATACATAGTTTTGAAGCCATTACTCCACGACCAAAGGAAAAGAAGTGTTGTGCTCTGTCAATCACTTGATAAGGCCACCGAAAATGAAGTTAACCGTTGCCTCTTTATATGCAGGTCAAATGTCATTGATTCCGACGAAGAATTAGATTTGGCAACTATGGCAACAATGGCAACTCATCCATGA

Protein sequence

MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRKRSVVLCQSLDKATENEVNRCLFICRSNVIDSDEELDLATMATMATHP
Homology
[Close]
BLAST of Csor.00g247750 vs. NCBI nr
Match: KAG6596291.1 (hypothetical protein SDJN03_09471, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193 bits (491), Expect = 4.53e-62
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRKRSVVLCQSLD 60
          MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRKRSVVLCQSLD
Sbjct: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRKRSVVLCQSLD 60

Query: 61 KATENEVNRCLFICRSNVIDSDEELDLATMATMATHP 97
          KATENEVNRCLFICRSNVIDSDEELDLATMATMATHP
Sbjct: 61 KATENEVNRCLFICRSNVIDSDEELDLATMATMATHP 97

[Close]
BLAST of Csor.00g247750 vs. NCBI nr
Match: KAG7027840.1 (hypothetical protein SDJN02_09017 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127 bits (319), Expect = 3.63e-36
Identity = 71/97 (73.20%), Postives = 71/97 (73.20%), Query Frame = 0 

Query: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQRKRSVVLCQSLD 60
          MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQR           
Sbjct: 1  MDQCLSEIKAVPRLLRRGTKTKVHILFYNIRILMFQSYIVLKPLLHDQR----------- 60

Query: 61 KATENEVNRCLFICRSNVIDSDEELDLATMATMATHP 97
                         SNVIDSDEELDLATMATMATHP
Sbjct: 61 ---------------SNVIDSDEELDLATMATMATHP 71

The following BLAST results are available for this feature:
BLAST of Csor.00g247750 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g247750 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596291.14.53e-62100.00hypothetical protein SDJN03_09471, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7027840.13.63e-3673.20hypothetical protein SDJN02_09017 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Csor.00g247750 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g247750 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g247750.m01Csor.00g247750.m01mRNA