Csor.00g247100 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g247100
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr06: 1249222 .. 1250228 (+)
RNA-Seq Expression	Csor.00g247100
Synteny	Csor.00g247100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATCTTCGATTGCTTCAGCTCGGTGCGACTCCATGGAATCCGAAACCGATCTTGACCTTGTAAAAGTGGCGGCTGAAGAAACCTTTCGTGAAGATTTTTTGGTGGATACAAAGCGAATGGCTTCACTTACTCTGGCCTTGAAACTCTGTAGAAATCCCACCGGCAAGTGCCTTGTGTCTCTGTTCAGGCCGAAGCTCAAAATTCCAGCGCCGTCGTCACCGCCGCCGTGTTTGAGCATGACTGTTGGGTTATCATTCACATCAGGACTGAAGCTGACCCGTTTGCTGGATTTCCTTGTCATTTCAACCTTACAAGTGAGATGTAAATCCAAAGGATAAACAGATATGGGTTTTAGAGAGAGACAGAGGGAAGCTAGTAACTTTTGTAGTCGGCAGAGAGGCTCAAAGTAAACGCTTGGTTTACGTTCAAATAGACATTTGATTTATATATAAAAAGATTCTTGGTTTGGATTGAAGGGGTGGAGAAAGATTAGGTTTTTATATATGGGTAAGACATGAAGGAAGGGTGTTATGGGAAGTGGATTAGATCAGAAAAGAGATCAGTGGAGCCAGCAGAGAATAAAAAGAGGAAGAAAAAGAAGAAGTAGAAGAGGGAGAGAATGAAGGGGGGAGCAAGAGAGAGACAACCACTTGATACTCCTCAGCATCATCGTTGCTTTTGAGGCACAACGGAAGGGCCCTACAAGTTTCTCTTTAGATGGCCATCTTGATTCCCATTTCCAGTAGAATCACAGAAATCCTTCGCCATGGTTAAGGTTAGTGGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTGTCTCCTTCTGTTGCTTGAATAAAACTTTTTCCCATTCACTTTTTCTTTTCTATTTTACTGTTCTTCGCAGAATAATTTGTCTTGAAAAATGTGCATGCTCTGAGATTTTTGACCTTTTGACTGAGAATTAA

mRNA sequence

ATGCAATCTTCGATTGCTTCAGCTCGGTGCGACTCCATGGAATCCGAAACCGATCTTGACCTTGTAAAAGTGGCGGCTGAAGAAACCTTTCGTGAAGATTTTTTGGTGGATACAAAGCGAATGGCTTCACTTACTCTGGCCTTGAAACTCTGTAGAAATCCCACCGGCAAGTGCCTTGTGTCTCTGTTCAGGCCGAAGCTCAAAATTCCAGCGCCGTCGTCACCGCCGCCGTGTTTGAGCATGACTGTTGGGTTATCATTCACATCAGGACTGAAGCTGACCCGTTTGCTGGATTTCCTTGTCATTTCAACCTTACAAAATCACAGAAATCCTTCGCCATGGTTAAGAATAATTTGTCTTGAAAAATGTGCATGCTCTGAGATTTTTGACCTTTTGACTGAGAATTAA

Coding sequence (CDS)

ATGCAATCTTCGATTGCTTCAGCTCGGTGCGACTCCATGGAATCCGAAACCGATCTTGACCTTGTAAAAGTGGCGGCTGAAGAAACCTTTCGTGAAGATTTTTTGGTGGATACAAAGCGAATGGCTTCACTTACTCTGGCCTTGAAACTCTGTAGAAATCCCACCGGCAAGTGCCTTGTGTCTCTGTTCAGGCCGAAGCTCAAAATTCCAGCGCCGTCGTCACCGCCGCCGTGTTTGAGCATGACTGTTGGGTTATCATTCACATCAGGACTGAAGCTGACCCGTTTGCTGGATTTCCTTGTCATTTCAACCTTACAAAATCACAGAAATCCTTCGCCATGGTTAAGAATAATTTGTCTTGAAAAATGTGCATGCTCTGAGATTTTTGACCTTTTGACTGAGAATTAA

Protein sequence

MQSSIASARCDSMESETDLDLVKVAAEETFREDFLVDTKRMASLTLALKLCRNPTGKCLVSLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPSPWLRIICLEKCACSEIFDLLTEN

Homology

[Close]

BLAST of Csor.00g247100 vs. NCBI nr
Match: KAG6596356.1 (hypothetical protein SDJN03_09536, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 268 bits (684), Expect = 2.71e-90
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MQSSIASARCDSMESETDLDLVKVAAEETFREDFLVDTKRMASLTLALKLCRNPTGKCLV 60
           MQSSIASARCDSMESETDLDLVKVAAEETFREDFLVDTKRMASLTLALKLCRNPTGKCLV
Sbjct: 1   MQSSIASARCDSMESETDLDLVKVAAEETFREDFLVDTKRMASLTLALKLCRNPTGKCLV 60

Query: 61  SLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPSPWLRIICL 120
           SLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPSPWLRIICL
Sbjct: 61  SLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPSPWLRIICL 120

Query: 121 EKCACSEIFDLLTEN 135
           EKCACSEIFDLLTEN
Sbjct: 121 EKCACSEIFDLLTEN 135

[Close]

BLAST of Csor.00g247100 vs. NCBI nr
Match: KAG7027905.1 (Sulfoquinovosyl transferase SQD2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227 bits (579), Expect = 3.11e-68
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MQSSIASARCDSMESETDLDLVKVAAEETFREDFLVDTKRMASLTLALKLCRNPTGKCLV 60
           MQSSIASARCDSMESETDLDLVKVAAEETFREDFLVDTKRMASLTLALKLCRNPTGKCLV
Sbjct: 90  MQSSIASARCDSMESETDLDLVKVAAEETFREDFLVDTKRMASLTLALKLCRNPTGKCLV 149

Query: 61  SLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPSPWLR 116
           SLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPSPWLR
Sbjct: 150 SLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPSPWLR 205

[Close]

BLAST of Csor.00g247100 vs. NCBI nr
Match: KAG7017238.1 (hypothetical protein SDJN02_19101, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (400), Expect = 2.71e-46
Identity = 89/104 (85.58%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MQSSIASARCDSMESETDLDLVKVA--AEETFREDFLVDTKRMASLTLALKLCRNPTGKC 60
           MQSS+ASARC+SMESETDLDLVKV   AEETFREDFLVDTKRMASLTLAL+LCRN TGK 
Sbjct: 86  MQSSMASARCESMESETDLDLVKVEVEAEETFREDFLVDTKRMASLTLALRLCRNLTGKY 145

Query: 61  LVSLFRPKLKIPAPSSPPPCLSMTVGLSFTSGLKLTRLLDFLVI 102
           LVSL RPKL IPAP S PPCLS TVGLSFTSGLKLTRLL FL I
Sbjct: 146 LVSLLRPKLHIPAPPSRPPCLSRTVGLSFTSGLKLTRLLAFLDI 189

[Close]

BLAST of Csor.00g247100 vs. NCBI nr
Match: TKY65880.1 (hypothetical protein E2542_SST08742 [Spatholobus suberectus])

HSP 1 Score: 60.1 bits (144), Expect = 1.40e-08
Identity = 50/111 (45.05%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 1   MQSSIASARCDSMESETDLDLVKVAAEETFREDFL-VDTKRMASLTLALKLCRNPTGKCL 60
           MQSS  SARC+S+  + D DL KV  EETF ED L  +T  +   T +     N TG  L
Sbjct: 1   MQSSTVSARCESVRPDNDRDLTKVD-EETFLEDLLPTETFLIVLATFSPSRRSNLTGDKL 60

Query: 61  VSLFRPKLKI-----------PAPSS--PPPCLSMTVGLSFTSGLKLTRLL 97
           VS+   K+ +           P  SS  PPPCL   VGLS TSGLK T LL
Sbjct: 61  VSIGNLKVHVLVILFLFLETLPPLSSLPPPPCLRKMVGLSLTSGLKHTLLL 110

[Close]

BLAST of Csor.00g247100 vs. NCBI nr
Match: KAF2288552.1 (hypothetical protein GH714_008464 [Hevea brasiliensis])

HSP 1 Score: 56.2 bits (134), Expect = 4.28e-06
Identity = 45/92 (48.91%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   MQSSIASARCDSMESETDLDLVKVAAEETFREDFL-VDTKRMASLTLALKLCRNPTGKCL 60
           +QSSIASA  +S+ S  DLDLVK+A EET REDFL +DT+R    TLA        G+ L
Sbjct: 283 IQSSIASALWESIASARDLDLVKLA-EETLREDFLFMDTRRRTLATLAPSRLSILAGEHL 342

Query: 61  VSLFRPKLKIPAPSS-------PPPCLSMTVG 84
             L   KLKIPA          PPPCL   +G
Sbjct: 343 ELLRSLKLKIPATLFLFAATLIPPPCLEEKMG 373

[Close]

BLAST of Csor.00g247100 vs. ExPASy TrEMBL
Match: A0A6N2MQ13 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS397242 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.43e-06
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 1  MQSSIASARCDSMESETDLDLVKVAAEETFREDFLV-DTKRMASLTLALKLCRNPTGKCL 60
          MQSSIASAR +S  S TDLDL K+  E T REDFL+ DTKR+   TLA +  R+  G+  
Sbjct: 16 MQSSIASARWESTASTTDLDLGKLD-EVTLREDFLLMDTKRITLATLARRRHRSLAGETF 75

Query: 61 VSLFRPKLKIPA 71
            L   K+KIPA
Sbjct: 76 EVLGSLKVKIPA 86

[Close]

BLAST of Csor.00g247100 vs. ExPASy TrEMBL
Match: A0A6A6KI30 (Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Hevea brasiliensis OX=3981 GN=GH714_008464 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.07e-06
Identity = 45/92 (48.91%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 1   MQSSIASARCDSMESETDLDLVKVAAEETFREDFL-VDTKRMASLTLALKLCRNPTGKCL 60
           +QSSIASA  +S+ S  DLDLVK+A EET REDFL +DT+R    TLA        G+ L
Sbjct: 283 IQSSIASALWESIASARDLDLVKLA-EETLREDFLFMDTRRRTLATLAPSRLSILAGEHL 342

Query: 61  VSLFRPKLKIPAPSS-------PPPCLSMTVG 84
             L   KLKIPA          PPPCL   +G
Sbjct: 343 ELLRSLKLKIPATLFLFAATLIPPPCLEEKMG 373

[Close]

BLAST of Csor.00g247100 vs. ExPASy TrEMBL
Match: A0A0L9VFF0 (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g244500 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.96e-06
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 1   MQSSIASARCD-SMESETDLDLVKVAAEETFREDFLV-DTKRMASLTLALKLCRNPTGKC 60
           MQSS A AR D S+ S+++ DL KV  EETF ED L+ +T  M   T +    RN TG  
Sbjct: 1   MQSSTALARYDESLGSDSERDLTKVD-EETFLEDLLLKETTLMEFATFSPSRSRNLTGDN 60

Query: 61  LVSL-FRPKLKIPAPSSPPP---CLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPS 112
             SL    KL++P      P   CL   VG S TSGLKLT LL    ++ L N+  PS
Sbjct: 61  KGSLDILEKLQLPMTLFLFPNTLCLRNMVGFSLTSGLKLTLLL---FLNILMNNTRPS 114

[Close]

BLAST of Csor.00g247100 vs. ExPASy TrEMBL
Match: A0A0S3S2R9 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G041400 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.96e-06
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 1   MQSSIASARCD-SMESETDLDLVKVAAEETFREDFLV-DTKRMASLTLALKLCRNPTGKC 60
           MQSS A AR D S+ S+++ DL KV  EETF ED L+ +T  M   T +    RN TG  
Sbjct: 1   MQSSTALARYDESLGSDSERDLTKVD-EETFLEDLLLKETTLMEFATFSPSRSRNLTGDN 60

Query: 61  LVSL-FRPKLKIPAPSSPPP---CLSMTVGLSFTSGLKLTRLLDFLVISTLQNHRNPS 112
             SL    KL++P      P   CL   VG S TSGLKLT LL    ++ L N+  PS
Sbjct: 61  KGSLDILEKLQLPMTLFLFPNTLCLRNMVGFSLTSGLKLTLLL---FLNILMNNTRPS 114

The following BLAST results are available for this feature:

BLAST of Csor.00g247100 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g247100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596356.1	2.71e-90	100.00	hypothetical protein SDJN03_09536, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7027905.1	3.11e-68	100.00	Sulfoquinovosyl transferase SQD2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7017238.1	2.71e-46	85.58	hypothetical protein SDJN02_19101, partial [Cucurbita argyrosperma subsp. argyro...	[more]
TKY65880.1	1.40e-08	45.05	hypothetical protein E2542_SST08742 [Spatholobus suberectus]	[more]
KAF2288552.1	4.28e-06	48.91	hypothetical protein GH714_008464 [Hevea brasiliensis]	[more]

BLAST of Csor.00g247100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2MQ13	1.43e-06	54.17	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS397242 PE=4 SV=...	[more]
A0A6A6KI30	2.07e-06	48.91	Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase OS=Hevea brasi...	[more]
A0A0L9VFF0	9.96e-06	44.07	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan09g244500 PE...	[more]
A0A0S3S2R9	9.96e-06	44.07	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G...	[more]

BLAST of Csor.00g247100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g247100.m01	Csor.00g247100.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process