Csor.00g245770 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g245770
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 931669 .. 932168 (+)
RNA-Seq Expression	Csor.00g245770
Synteny	Csor.00g245770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCCGAGTGTCAACCACTCAAAATGGCCGACATGTTTGACTCTTGGAGCTCAGGAGTGGAAGTGGAAGTAGCAACAGCCACAGCCACAGCGACGAGCTGAAGTCTTGTAAGTTGGGGCATCTTAAATACAAGTAAACAAAGTTAGGCCTTGAGCTACCTCCAAAAGCTTATTAAAAAAATGGCGTCCCCCAGGAGGATCCGGATTTCCCTTCTCTTGAGGCTGCTTTTCTTTGCTTTGCTTCTCGTTGCCTCTACTGCTTCTGCAGCCAACAGCAAGGCTTTGCTCCACAATTCCTCGTACTCGTAAGTTGTCTGTCTTGTTTCCCATTATTATTGTCTCTGATACGTACTAGTAGCATCCATGGTTTCATGGTTTCAGGCAAAATGGCGATGGAGTACGGACAGGTTGGGAAGGGTACATCAAAGAAACCCACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGA

mRNA sequence

ATGAAACCCGAGTGTCAACCACTCAAAATGGCCGACATGTTTGACTCTTGGAGCTCAGGAGTGGAAGTGGAACCAACAGCAAGGCTTTGCTCCACAATTCCTCGTACTCGCAAAATGGCGATGGAGTACGGACAGGTTGGGAAGGGTACATCAAAGAAACCCACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGA

Coding sequence (CDS)

ATGAAACCCGAGTGTCAACCACTCAAAATGGCCGACATGTTTGACTCTTGGAGCTCAGGAGTGGAAGTGGAACCAACAGCAAGGCTTTGCTCCACAATTCCTCGTACTCGCAAAATGGCGATGGAGTACGGACAGGTTGGGAAGGGTACATCAAAGAAACCCACTGCTGATGATGTCCCATGGGGAGGAGGCTATGTTCCTCCCATATTAAGCAACCACCCTTGA

Protein sequence

MKPECQPLKMADMFDSWSSGVEVEPTARLCSTIPRTRKMAMEYGQVGKGTSKKPTADDVPWGGGYVPPILSNHP

Homology

[Close]

BLAST of Csor.00g245770 vs. NCBI nr
Match: KAG6576805.1 (hypothetical protein SDJN03_24379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (404), Expect = 1.64e-49
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MKPECQPLKMADMFDSWSSGVEVEPTARLCSTIPRTRKMAMEYGQVGKGTSKKPTADDVP 60
          MKPECQPLKMADMFDSWSSGVEVEPTARLCSTIPRTRKMAMEYGQVGKGTSKKPTADDVP
Sbjct: 1  MKPECQPLKMADMFDSWSSGVEVEPTARLCSTIPRTRKMAMEYGQVGKGTSKKPTADDVP 60

Query: 61 WGGGYVPPILSNHP 74
          WGGGYVPPILSNHP
Sbjct: 61 WGGGYVPPILSNHP 74

[Close]

BLAST of Csor.00g245770 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.0 bits (219), Expect = 3.16e-21
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 34 PRTRKMAMEYGQVGKGTSKKPTADDVPWGGGYVPPILSNHP 74
          PRT KMAMEYGQVGKGTSKKPTADDVPWGGGYVPPILSNHP
Sbjct: 39 PRTPKMAMEYGQVGKGTSKKPTADDVPWGGGYVPPILSNHP 79

The following BLAST results are available for this feature:

BLAST of Csor.00g245770 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g245770 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576805.1	1.64e-49	100.00	hypothetical protein SDJN03_24379, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014832.1	3.16e-21	97.56	hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Csor.00g245770 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g245770 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g245770.m01	Csor.00g245770.m01	mRNA