Homology
BLAST of Csor.00g245680 vs. ExPASy Swiss-Prot
Match:
Q91WD1 (DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d PE=2 SV=2)
HSP 1 Score: 60.5 bits (145), Expect = 4.2e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
L +L G +GKLLI KSG V+L LG DV+ G CSFLQ +V++ ++ G+ LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLG 377
Query: 305 EIGKRVVVTPDIGSLLN 319
+ ++V +PD SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394
BLAST of Csor.00g245680 vs. ExPASy Swiss-Prot
Match:
P05423 (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D PE=1 SV=2)
HSP 1 Score: 60.1 bits (144), Expect = 5.4e-08
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0
Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
L +L G +GKLLI KSG V+L LG DV+ G CSFLQ +V++ ++ G+ LG
Sbjct: 318 LADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLG 377
Query: 305 EIGKRVVVTPDIGSLLN 319
+ ++V +PD SLL+
Sbjct: 378 HVKHKLVCSPDFESLLD 394
BLAST of Csor.00g245680 vs. ExPASy Swiss-Prot
Match:
Q5E9Z7 (DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=2 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 2.1e-07
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0
Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAI---NTDKGQCCDLG 304
L +L G +GKLLI KSG V+L LG DV+ G CSFLQ +V++ ++ G LG
Sbjct: 318 LADLTEGQVGKLLIRKSGKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGDMTVLG 377
Query: 305 EIGKRVVVTPDIGSLLN 319
I ++V +P+ SLL+
Sbjct: 378 HIKHKLVCSPNFESLLD 394
BLAST of Csor.00g245680 vs. ExPASy Swiss-Prot
Match:
O74857 (DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc53 PE=2 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 6.0e-07
Identity = 81/344 (23.55%), Postives = 130/344 (37.79%), Query Frame = 0
Query: 14 KFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKKSSVQVAFGP 73
KF PK PRR+ P E++DV V + + + +++ +S A GP
Sbjct: 3 KFTPKFVPRRKNGP---VEEKDVDERVKIEFDVESQKKWKASRPKPEIKLTASGPFALGP 62
Query: 74 GAASASESSSIRTYGVPKIGNSSRKKD-----IEPESAEDEEHILPLP--MDFEEYGKNL 133
A+S+ I + VP + +KD + S DE H + + E
Sbjct: 63 NASSSGTGRPIGSVYVPPPNVKNEEKDDALSKLAASSGHDEGHDEDMVDILKLRELNGQE 122
Query: 134 NEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAE--FGQDVMDREYDE 193
KT+ K+ P +P S D ++ AE V+++E DE
Sbjct: 123 QGKTDIGGKDL------------LVPIITDRMLPESNDEKLKHHAESAIHTTVINKE-DE 182
Query: 194 NSSIPALD-------LGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSIST 253
ALD LGL ++ + Q+ + FP + G V + S
Sbjct: 183 EQERVALDLQSLAQHLGLTEQEGMEDHFKDQM-VLMQFPDKLPRFMGDADVDPVWPSSEV 242
Query: 254 ASSELG----------------------DLQNL-------PGGYMGKLLIYKSGAVKLRL 313
E G DL +L P G +G L +++SG L +
Sbjct: 243 KEEEAGEKTDVEEKKDPDKHGRENGNIDDLTSLPYPAFHPPAGQIGVLRVHQSGKTTLEM 302
BLAST of Csor.00g245680 vs. ExPASy Swiss-Prot
Match:
P25441 (DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC53 PE=1 SV=2)
HSP 1 Score: 52.4 bits (124), Expect = 1.1e-05
Identity = 34/125 (27.20%), Postives = 60/125 (48.00%), Query Frame = 0
Query: 199 NSENTRYF-FQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGDLQNLP-------G 258
N++ R+ FQLP LP +R + KE + S S +
Sbjct: 298 NNKPERFMVFQLPTRLPAFERPAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTRELA 357
Query: 259 GYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAIN--TDKGQCCDLGEIGKRVV 314
G +G + ++KSG + +++G+ + D+ G + +FLQ V+A++ D LG + ++V
Sbjct: 358 GKVGSIRVHKSGKLSVKIGNVVMDIGKGAETTFLQDVIALSIADDASSAELLGRVDGKIV 417
BLAST of Csor.00g245680 vs. NCBI nr
Match:
KAG6576814.1 (DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 641 bits (1653), Expect = 9.71e-232
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
Query: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE
Sbjct: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
BLAST of Csor.00g245680 vs. NCBI nr
Match:
KAG7014838.1 (DNA-directed RNA polymerase III subunit RPC4 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 634 bits (1635), Expect = 5.38e-229
Identity = 322/324 (99.38%), Postives = 322/324 (99.38%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
Query: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEE ILP PMDFE
Sbjct: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
BLAST of Csor.00g245680 vs. NCBI nr
Match:
XP_022922968.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata])
HSP 1 Score: 632 bits (1631), Expect = 2.19e-228
Identity = 321/324 (99.07%), Postives = 322/324 (99.38%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
Query: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEE ILP PMDFE
Sbjct: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
ELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
BLAST of Csor.00g245680 vs. NCBI nr
Match:
XP_023551929.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 615 bits (1587), Expect = 1.12e-221
Identity = 314/324 (96.91%), Postives = 316/324 (97.53%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
Query: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK D EPESAEDEE I PLPMDFE
Sbjct: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDNEPESAEDEELISPLPMDFE 120
Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
EYGKNLNEKTEDA KNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPE+LDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDAIKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPELLDEAEFGQDVMDR 180
Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
E DENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SS
Sbjct: 181 ECDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSS 240
Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
BLAST of Csor.00g245680 vs. NCBI nr
Match:
XP_022985496.1 (DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima])
HSP 1 Score: 609 bits (1570), Expect = 4.35e-219
Identity = 311/324 (95.99%), Postives = 316/324 (97.53%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDV GNVAQTRYLLRRATENLGKRGNK
Sbjct: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRGNK 60
Query: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK DIEPESAEDEE ILPLP+DFE
Sbjct: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFE 120
Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
EYGKNLNEKTEDATKNTKDYKEPW+ HNSYYPTTLPLRMP+SGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDR 180
Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
EYDENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SS
Sbjct: 181 EYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSS 240
Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQC DL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDL 300
Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
G+IGKRVVVTPDIGSLLNS TDLG
Sbjct: 301 GDIGKRVVVTPDIGSLLNSTTDLG 324
BLAST of Csor.00g245680 vs. ExPASy TrEMBL
Match:
A0A6J1E8A8 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita moschata OX=3662 GN=LOC111430793 PE=4 SV=1)
HSP 1 Score: 632 bits (1631), Expect = 1.06e-228
Identity = 321/324 (99.07%), Postives = 322/324 (99.38%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK
Sbjct: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
Query: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEE ILP PMDFE
Sbjct: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEELILPPPMDFE 120
Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS
Sbjct: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
ELGDL+NLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL
Sbjct: 241 ELGDLRNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
GEIGKRVVVTPDIGSLLNSMTDLG
Sbjct: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
BLAST of Csor.00g245680 vs. ExPASy TrEMBL
Match:
A0A6J1J8D2 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita maxima OX=3661 GN=LOC111483488 PE=4 SV=1)
HSP 1 Score: 609 bits (1570), Expect = 2.11e-219
Identity = 311/324 (95.99%), Postives = 316/324 (97.53%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNK 60
MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDV GNVAQTRYLLRRATENLGKRGNK
Sbjct: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVDGNVAQTRYLLRRATENLGKRGNK 60
Query: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFE 120
VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRK DIEPESAEDEE ILPLP+DFE
Sbjct: 61 VEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKNDIEPESAEDEELILPLPLDFE 120
Query: 121 EYGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDR 180
EYGKNLNEKTEDATKNTKDYKEPW+ HNSYYPTTLPLRMP+SGDPEMLDEAEFGQDVMDR
Sbjct: 121 EYGKNLNEKTEDATKNTKDYKEPWNCHNSYYPTTLPLRMPFSGDPEMLDEAEFGQDVMDR 180
Query: 181 EYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 240
EYDENS+IPALDLGLLDENSENTRYFFQLPA LPFPKRSSTSTGKEKVGNLRSSIST SS
Sbjct: 181 EYDENSNIPALDLGLLDENSENTRYFFQLPARLPFPKRSSTSTGKEKVGNLRSSISTGSS 240
Query: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 300
ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQC DL
Sbjct: 241 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCFDL 300
Query: 301 GEIGKRVVVTPDIGSLLNSMTDLG 324
G+IGKRVVVTPDIGSLLNS TDLG
Sbjct: 301 GDIGKRVVVTPDIGSLLNSTTDLG 324
BLAST of Csor.00g245680 vs. ExPASy TrEMBL
Match:
A0A5A7TN83 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004050 PE=4 SV=1)
HSP 1 Score: 480 bits (1236), Expect = 2.26e-168
Identity = 255/335 (76.12%), Postives = 278/335 (82.99%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
MKN D SPPRRK+KFAPKS+ RRRPPP P KTEDED G VAQTRYLLRRA ENLGKR
Sbjct: 1 MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
Query: 61 NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMD 120
NKVE+KSSVQVAFGPGA S S SSIRTYGVPK+ N SRK DIEPE EDEE +LP+ MD
Sbjct: 61 NKVERKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMD 120
Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
E GK ++KT+D TK +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180
Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
DEAEFGQD M+REYDENS IPALDLGL DEN+ENT+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKV 240
Query: 241 GNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
GN RSS ST+SS+L DL+ L G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV 300
Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 323
AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333
BLAST of Csor.00g245680 vs. ExPASy TrEMBL
Match:
A0A0A0KZ61 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1)
HSP 1 Score: 478 bits (1230), Expect = 1.85e-167
Identity = 253/335 (75.52%), Postives = 279/335 (83.28%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
MKN DPSPPRRK+KFAPKS+ R+RPPP P KTEDED G VAQTRYLLRRA ENLGKR
Sbjct: 1 MKNSDPSPPRRKVKFAPKSSQRKRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
Query: 61 NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMD 120
NKVEKKSSVQVAFGPGA S S SSIRTYGVPK+ N SRK DIEPE EDEE +LP+ D
Sbjct: 61 NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVARD 120
Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
E GK ++KT+D TK +DYKEPWDY NSYYPTTLPLRMPYSGDPE L
Sbjct: 121 VNEDGKYFDKKTKDGITESSSSAMETKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDPERL 180
Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
DEAEFGQDVM+REYDENS IPALDLGLLDEN+E+T+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDVMNREYDENSVIPALDLGLLDENTESTKYFFQLPARLPLPKQSSTATGKEKV 240
Query: 241 GNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
GN RSS ST+SS+L DL+ L G MGKLLIYKSGA+KLRLGD LYDVSSG +CSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSNCSFLQHVV 300
Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 323
AINT++GQCCDLG+IG RVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEEGQCCDLGDIGNRVVVTPDISSLLNSVTNL 333
BLAST of Csor.00g245680 vs. ExPASy TrEMBL
Match:
A0A1S3BYJ9 (DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC103494480 PE=4 SV=1)
HSP 1 Score: 478 bits (1230), Expect = 1.85e-167
Identity = 255/335 (76.12%), Postives = 277/335 (82.69%), Query Frame = 0
Query: 1 MKNPDPSPPRRKIKFAPKSTPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRG 60
MKN D SPPRRK+KFAPKS+ RRRPPP P KTEDED G VAQTRYLLRRA ENLGKR
Sbjct: 1 MKNQDSSPPRRKVKFAPKSSQRRRPPPPPVQKTEDEDGEGYVAQTRYLLRRANENLGKRA 60
Query: 61 NKVEKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMD 120
NKVEKKSSVQVAFGPGA S S SSIRTYGVPK+ N SRK DIEPE EDEE +LP+ MD
Sbjct: 61 NKVEKKSSVQVAFGPGAESTS--SSIRTYGVPKVENGSRKNDIEPEVDEDEEFVLPVAMD 120
Query: 121 FEEYGKNLNEKTEDA----------TKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEML 180
E GK ++KT+D TK +DYKEPWDY NSYYPTTLPLRMPYSGD E L
Sbjct: 121 VNEDGKFFDKKTKDGIAESSSSAMVTKTKRDYKEPWDYQNSYYPTTLPLRMPYSGDHERL 180
Query: 181 DEAEFGQDVMDREYDENSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKV 240
DEAEFGQD M+REYDENS IPALDLGL DEN+ENT+YFFQLPA LP PK+SST+TGKEKV
Sbjct: 181 DEAEFGQDAMNREYDENSVIPALDLGLQDENTENTKYFFQLPARLPLPKQSSTATGKEKV 240
Query: 241 GNLRSSISTASSELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVV 300
GN RSS ST+SS+L DL+ L G MGKLLIYKSGA+KLRLGD LYDVSSG DCSFLQHVV
Sbjct: 241 GNSRSSNSTSSSDLDDLKKLSAGCMGKLLIYKSGAIKLRLGDILYDVSSGSDCSFLQHVV 300
Query: 301 AINTDKGQCCDLGEIGKRVVVTPDIGSLLNSMTDL 323
AINT+KGQCCDLG+IGKRVVVTPDI SLLNS+T+L
Sbjct: 301 AINTEKGQCCDLGDIGKRVVVTPDISSLLNSVTNL 333
BLAST of Csor.00g245680 vs. TAIR 10
Match:
AT4G25180.1 (RNA polymerase III RPC4 )
HSP 1 Score: 188.7 bits (478), Expect = 7.2e-48
Identity = 128/323 (39.63%), Postives = 174/323 (53.87%), Query Frame = 0
Query: 5 DPSPPRRKIKFAPK-STPRRRPPPAP--KTEDEDVVGNVAQTRYLLRRATENLGKRGNKV 64
D + K +F P P RR P AP TE E+ N+ +R RR +G+R
Sbjct: 2 DSGEQKSKRRFQPNPPRPSRRLPIAPTSNTEAEEDEENIKASRQFDRRI---VGRRPKTE 61
Query: 65 EKKSSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFEE 124
K SS +VAF P + +IR++GVPK + D+ P S ILP
Sbjct: 62 TKASSPEVAFQPSLSPL----AIRSFGVPK-EDDKPNSDVNPSSPAS---ILPAVSSVTA 121
Query: 125 YGKNLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDRE 184
++ E T+ DY EPWDY NSYYPT LPLR P SGD E+LD+ EFG+ +R+
Sbjct: 122 AQEDGEEVHNFVTRTGDDYVEPWDYRNSYYPTVLPLRKPNSGDIELLDQEEFGEVAKNRD 181
Query: 185 YDENSSIPALDLGLLD-ENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASS 244
YDEN+ A +LGL ++S+ + F++P CLP K+++ +T K V S IS
Sbjct: 182 YDENTINSAEELGLTSVQHSKKQMFIFKIPDCLPVVKQTTGATTKRSVREYSSGIS---- 241
Query: 245 ELGDLQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDL 304
+ LP G+MGK+L+YKSGAVKL++GD L+DVS G VVAI+ C +
Sbjct: 242 --NPFEGLPEGFMGKMLVYKSGAVKLKVGDALFDVSPGPGTKIPNDVVAIDIKGRNCSRI 301
Query: 305 GEIGKRVVVTPDIGSLLNSMTDL 324
G K V VTPD+ SLLN +D+
Sbjct: 302 GSSAKFVTVTPDVESLLNPASDM 307
BLAST of Csor.00g245680 vs. TAIR 10
Match:
AT5G09380.1 (RNA polymerase III RPC4 )
HSP 1 Score: 175.3 bits (443), Expect = 8.2e-44
Identity = 118/319 (36.99%), Postives = 171/319 (53.61%), Query Frame = 0
Query: 5 DPSPPRRKIKFAPKSTPRRRPPPAPKTEDEDVVGNVAQTRYLLRRATENLGKRGNKVEKK 64
+ PP RK+KFAPK+ P+R P P K E + N AQ LLRR E ++ +K
Sbjct: 2 EQKPPVRKMKFAPKAPPKRVPKPEVKPEVVEDNSNSAQASELLRRVNERSLRKPKADKKV 61
Query: 65 SSVQVAFGPGAASASESSSIRTYGVPKIGNSSRKKDIEPESAEDEEHILPLPMDFEEYGK 124
+ QVA+ G +++ S+ K N S YG
Sbjct: 62 PASQVAWLGGVVNSTRSN--------KYLNRSN----------------------GAYGS 121
Query: 125 NLNEKTEDATKNTKDYKEPWDYHNSYYPTTLPLRMPYSGDPEMLDEAEFGQDVMDREYDE 184
++ E YKEPWDY+ SYYP TLP+R PY+GDPE+LD EF Q + E
Sbjct: 122 TSTQEIE--------YKEPWDYY-SYYPITLPMRRPYAGDPEVLDVEEFMQ---AGGHHE 181
Query: 185 NSSIPALDLGLLDENSENTRYFFQLPACLPFPKRSSTSTGKEKVGNLRSSISTASSELGD 244
+S A +LGL++++ E +F +LP+ P S+ + E N++ + + D
Sbjct: 182 DSLNTAANLGLMEDSGEQKMFFMRLPS---VPLASTPTENLETRPNIKGPV---EKKTVD 241
Query: 245 LQNLPGGYMGKLLIYKSGAVKLRLGDTLYDVSSGLDCSFLQHVVAINTDKGQCCDLGEIG 304
L+ LP GYMGKLL+YKSGAVK++LG+ LYDVS GL F Q V+ +NT++ CC +G++
Sbjct: 242 LKALPEGYMGKLLVYKSGAVKMKLGEVLYDVSPGLKSEFAQDVMVVNTEQKNCCLVGDVY 272
Query: 305 KRVVVTPDIGSLLNSMTDL 324
K V+TPDI S+L + ++
Sbjct: 302 KHAVLTPDIDSILKDIENI 272
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q91WD1 | 4.2e-08 | 42.86 | DNA-directed RNA polymerase III subunit RPC4 OS=Mus musculus OX=10090 GN=Polr3d ... | [more] |
P05423 | 5.4e-08 | 42.86 | DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens OX=9606 GN=POLR3D P... | [more] |
Q5E9Z7 | 2.1e-07 | 42.86 | DNA-directed RNA polymerase III subunit RPC4 OS=Bos taurus OX=9913 GN=POLR3D PE=... | [more] |
O74857 | 6.0e-07 | 23.55 | DNA-directed RNA polymerase III subunit rpc4 OS=Schizosaccharomyces pombe (strai... | [more] |
P25441 | 1.1e-05 | 27.20 | DNA-directed RNA polymerase III subunit RPC4 OS=Saccharomyces cerevisiae (strain... | [more] |
Match Name | E-value | Identity | Description | |
KAG6576814.1 | 9.71e-232 | 100.00 | DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma su... | [more] |
KAG7014838.1 | 5.38e-229 | 99.38 | DNA-directed RNA polymerase III subunit RPC4 [Cucurbita argyrosperma subsp. argy... | [more] |
XP_022922968.1 | 2.19e-228 | 99.07 | DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita moschata] | [more] |
XP_023551929.1 | 1.12e-221 | 96.91 | DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022985496.1 | 4.35e-219 | 95.99 | DNA-directed RNA polymerase III subunit rpc4-like [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1E8A8 | 1.06e-228 | 99.07 | DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita moschata OX=3662 ... | [more] |
A0A6J1J8D2 | 2.11e-219 | 95.99 | DNA-directed RNA polymerase III subunit rpc4-like OS=Cucurbita maxima OX=3661 GN... | [more] |
A0A5A7TN83 | 2.26e-168 | 76.12 | DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo var. makuwa OX... | [more] |
A0A0A0KZ61 | 1.85e-167 | 75.52 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022870 PE=4 SV=1 | [more] |
A0A1S3BYJ9 | 1.85e-167 | 76.12 | DNA-directed RNA polymerase III subunit rpc4-like OS=Cucumis melo OX=3656 GN=LOC... | [more] |