Csor.00g244760 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g244760
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Phytosulfokine-beta
Location	Csor_Chr16: 1487463 .. 1487833 (+)
RNA-Seq Expression	Csor.00g244760
Synteny	Csor.00g244760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCGGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGGTACGTAAATTTATCAGCAATTGCTCTTGTTAATATGTCTTTCTATAAAGAAAGAAAATTGTAGTGAATATTGTGTGCTTTTTTTCCTTCTTTCTGGGAAGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

mRNA sequence

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCGGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

Coding sequence (CDS)

ATGGCTTCCAAACTCTTAACCTCCATCTTCACATTCCTCTTCCTTTTCTTCTCCTTTGTCTCCTCGGCAACCACCATCGGCGCTCGGCCTGTGCCTGTTCCAGGCTTTTCAAATGCTTTTCCCGGGACTTCTCGAGACGGGTTGAAGGCTGGGGATGATGCTTTGGAGGAGGAGAGTTGTGAAGAAATTGGAGAAGAATATTGCTTGATGAGGAAAACTCTTGCAGCCCATGCTGATTATATCTACACAGATAGCCAGAGGAAGCCATGA

Protein sequence

MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESCEEIGEEYCLMRKTLAAHADYIYTDSQRKP

Homology

[Close]

BLAST of Csor.00g244760 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-05
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 10 FTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESCEEIGEEYCL 69
          FT +F+    + S  T  AR  P    + +   + ++      D +EEESC  IGEE CL
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTTTALSRENSVKE---IEGDKVEEESCNGIGEEECL 63

Query: 70 MRKTLAAHADYIYTDSQR 88
          +R++L  H DYIYT + +
Sbjct: 64 IRRSLVLHTDYIYTQNHK 78

[Close]

BLAST of Csor.00g244760 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 30/83 (36.14%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          M+SK +T +   L    S   +     ARP+         P  S   +    + + +E+C
Sbjct: 1  MSSKAITLLLIALLFSLSLAQA-----ARPLQ--------PADSTKSVHVIPEKVHDEAC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYT 84
          E +GEE CLMR+TL AH DYIYT
Sbjct: 61 EGVGEEECLMRRTLTAHVDYIYT 70

[Close]

BLAST of Csor.00g244760 vs. NCBI nr
Match: XP_022922962.1 (phytosulfokines-like [Cucurbita moschata] >KAG6576906.1 Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (449), Expect = 6.50e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89
          EEIGEEYCLMRKTLAAHADYIYTDSQRKP
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89

[Close]

BLAST of Csor.00g244760 vs. NCBI nr
Match: KAG7014931.1 (Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176 bits (445), Expect = 2.65e-55
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKLLTSIFTFLFLFFSFVSSATTIGA+PVPVPGFSNAFPGTSRDGLKAGDDALEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGAQPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89
          EEIGEEYCLMRKTLAAHADYIYTDSQRKP
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89

[Close]

BLAST of Csor.00g244760 vs. NCBI nr
Match: XP_022984884.1 (phytosulfokines-like [Cucurbita maxima])

HSP 1 Score: 171 bits (432), Expect = 7.87e-53
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1   MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
           MA KLLTSIFTFLFLFFSFVSS TTIGARPVPVPGFSNAFPGTSRD LKAGDDALEEESC
Sbjct: 37  MAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDALEEESC 96

Query: 61  EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89
           EEIGEEYCLMRKTLAAHADYIYTDSQRKP
Sbjct: 97  EEIGEEYCLMRKTLAAHADYIYTDSQRKP 125

[Close]

BLAST of Csor.00g244760 vs. NCBI nr
Match: XP_004150263.1 (phytosulfokines 3 [Cucumis sativus])

HSP 1 Score: 124 bits (312), Expect = 4.85e-35
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGARPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FLFLF  F SS+TT I ARPVP  GFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVP--GFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 87
          C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of Csor.00g244760 vs. NCBI nr
Match: KAA0044319.1 (Phytosulfokines 3 precursor family protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 8.86e-33
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGARPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FLFLF  F SS+TT + ARPVP  GFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVP--GFSNAFLGTSRDGVV--DDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 87
          C+EIGE+YCLMRKT+AAH DYIYTDSQ+
Sbjct: 61 CDEIGEDYCLMRKTVAAHVDYIYTDSQK 84

[Close]

BLAST of Csor.00g244760 vs. ExPASy TrEMBL
Match: A0A6J1E4U5 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1)

HSP 1 Score: 177 bits (449), Expect = 3.15e-56
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC
Sbjct: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89
          EEIGEEYCLMRKTLAAHADYIYTDSQRKP
Sbjct: 61 EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89

[Close]

BLAST of Csor.00g244760 vs. ExPASy TrEMBL
Match: A0A6J1JBS4 (Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111483027 PE=3 SV=1)

HSP 1 Score: 171 bits (432), Expect = 3.81e-53
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1   MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
           MA KLLTSIFTFLFLFFSFVSS TTIGARPVPVPGFSNAFPGTSRD LKAGDDALEEESC
Sbjct: 37  MAPKLLTSIFTFLFLFFSFVSSVTTIGARPVPVPGFSNAFPGTSRDELKAGDDALEEESC 96

Query: 61  EEIGEEYCLMRKTLAAHADYIYTDSQRKP 89
           EEIGEEYCLMRKTLAAHADYIYTDSQRKP
Sbjct: 97  EEIGEEYCLMRKTLAAHADYIYTDSQRKP 125

[Close]

BLAST of Csor.00g244760 vs. ExPASy TrEMBL
Match: A0A0A0KY18 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 2.35e-35
Identity = 67/88 (76.14%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGARPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FLFLF  F SS+TT I ARPVP  GFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPIAARPVP--GFSNAFLGTSRDGVVVEDDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 87
          C+EIGEEYCLMRKTLAAH DYIYTD+Q+
Sbjct: 61 CDEIGEEYCLMRKTLAAHVDYIYTDTQK 86

[Close]

BLAST of Csor.00g244760 vs. ExPASy TrEMBL
Match: A0A5A7TSX1 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00410 PE=3 SV=1)

HSP 1 Score: 119 bits (297), Expect = 4.29e-33
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATT-IGARPVPVPGFSNAFPGTSRDGLKAGDDALEEES 60
          MASKL TSI+ FLFLF  F SS+TT + ARPVP  GFSNAF GTSRDG+   DD LEEES
Sbjct: 1  MASKLFTSIYPFLFLFLFFSSSSTTPVAARPVP--GFSNAFLGTSRDGVV--DDVLEEES 60

Query: 61 CEEIGEEYCLMRKTLAAHADYIYTDSQR 87
          C+EIGE+YCLMRKT+AAH DYIYTDSQ+
Sbjct: 61 CDEIGEDYCLMRKTVAAHVDYIYTDSQK 84

[Close]

BLAST of Csor.00g244760 vs. ExPASy TrEMBL
Match: A0A6J1FNZ6 (Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1)

HSP 1 Score: 117 bits (293), Expect = 1.75e-32
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1  MASKLLTSIFTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESC 60
          MASKL+TSIFTFLFLFF   SS T++ ARP+P  G +N  PGT+RDG K  DD LEEESC
Sbjct: 1  MASKLVTSIFTFLFLFFFLFSSTTSVFARPIP--GSTNMSPGTTRDGFKVVDDVLEEESC 60

Query: 61 EEIGEEYCLMRKTLAAHADYIYTDSQR 87
            IGEE+CLMRKTLAAHADYIYTD QR
Sbjct: 61 G-IGEEHCLMRKTLAAHADYIYTDKQR 84

[Close]

BLAST of Csor.00g244760 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 10 FTFLFLFFSFVSSATTIGARPVPVPGFSNAFPGTSRDGLKAGDDALEEESCEEIGEEYCL 69
          FT +F+    + S  T  AR  P    + +   + ++      D +EEESC  IGEE CL
Sbjct: 4  FTTIFIMALLLCSTLTYAARLTPTTTTALSRENSVKE---IEGDKVEEESCNGIGEEECL 63

Query: 70 MRKTLAAHADYIYTDSQR 88
          +R++L  H DYIYT + +
Sbjct: 64 IRRSLVLHTDYIYTQNHK 78

[Close]

BLAST of Csor.00g244760 vs. TAIR 10
Match: AT2G22860.1 (phytosulfokine 2 precursor )

HSP 1 Score: 40.4 bits (93), Expect = 8.7e-04
Identity = 19/41 (46.34%), Postives = 26/41 (63.41%), Query Frame = 0


Query: 49 KAGDDALEEESCEEIGEEYCLMRKTLAAHADYIYTDSQRKP 90
          K  D  + +E+C    +E CLMR+TL AH DYIYT  ++ P
Sbjct: 48 KLDDMHMVDENC-GADDEDCLMRRTLVAHTDYIYTQKKKHP 87

The following BLAST results are available for this feature:

BLAST of Csor.00g244760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2Y0	3.4e-05	35.90	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
Q9FS10	1.0e-04	36.14	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]

BLAST of Csor.00g244760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922962.1	6.50e-56	100.00	phytosulfokines-like [Cucurbita moschata] >KAG6576906.1 Phytosulfokines 3, parti...	[more]
KAG7014931.1	2.65e-55	98.88	Phytosulfokines 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022984884.1	7.87e-53	96.63	phytosulfokines-like [Cucurbita maxima]	[more]
XP_004150263.1	4.85e-35	76.14	phytosulfokines 3 [Cucumis sativus]	[more]
KAA0044319.1	8.86e-33	73.86	Phytosulfokines 3 precursor family protein [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g244760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4U5	3.15e-56	100.00	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111430788 PE=3 SV=1	[more]
A0A6J1JBS4	3.81e-53	96.63	Phytosulfokine-beta OS=Cucurbita maxima OX=3661 GN=LOC111483027 PE=3 SV=1	[more]
A0A0A0KY18	2.35e-35	76.14	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_4G000620 PE=3 SV=1	[more]
A0A5A7TSX1	4.29e-33	73.86	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G0...	[more]
A0A6J1FNZ6	1.75e-32	72.41	Phytosulfokine-beta OS=Cucurbita moschata OX=3662 GN=LOC111447189 PE=3 SV=1	[more]

BLAST of Csor.00g244760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49780.1	2.4e-06	35.90	phytosulfokine 4 precursor	[more]
AT2G22860.1	8.7e-04	46.34	phytosulfokine 2 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 52..87 e-value: 3.7E-10 score: 40.7
IPR009438	Phytosulfokine	PANTHER	PTHR33285	PHYTOSULFOKINES 3	coord: 1..87
None	No IPR available	PANTHER	PTHR33285:SF1	PHYTOSULFOKINES 3	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g244760.m01	Csor.00g244760.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008083	growth factor activity