Csor.00g243880 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g243880
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr16: 1955808 .. 1956122 (-)
RNA-Seq Expression	Csor.00g243880
Synteny	Csor.00g243880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATGAAGATGTTAACTCCAGAAAAGCCAGGAAACAGCGGCAAAGAATTAAAAGGCAGAGAGCAGGGACACAGACAGGTACCAACACTGGAAGAGATCAGCAGCAGCAGCGTCTTGCACAACGGGACGATTGTTTTCGTTCACCAATTCGGCAAAAATTACCCAGGCACAACACTTTTGAAGCCAAACCAGAAACCTAACTGCGCACTGGACCTGTTACCGGGTCACGACTTGAACCAGAATCCTTTTTCTTCAAAGAAAGATTGGCAAATTGATTGTCGAGGTCTTTGCTCGAACTACGTCGATGACTAG

mRNA sequence

ATGCATATGAAGATGTTAACTCCAGAAAAGCCAGGAAACAGCGGCAAAGAATTAAAAGGCAGAGAGCAGGGACACAGACAGGTACCAACACTGGAAGAGATCAGCAGCAGCAGCGTCTTGCACAACGGGACGATTGTTTTCGTTCACCAATTCGGCAAAAATTACCCAGGCACAACACTTTTGAAGCCAAACCAGAAACCTAACTGCGCACTGGACCTGTTACCGGGTCACGACTTGAACCAGAATCCTTTTTCTTCAAAGAAAGATTGGCAAATTGATTGTCGAGGTCTTTGCTCGAACTACGTCGATGACTAG

Coding sequence (CDS)

ATGCATATGAAGATGTTAACTCCAGAAAAGCCAGGAAACAGCGGCAAAGAATTAAAAGGCAGAGAGCAGGGACACAGACAGGTACCAACACTGGAAGAGATCAGCAGCAGCAGCGTCTTGCACAACGGGACGATTGTTTTCGTTCACCAATTCGGCAAAAATTACCCAGGCACAACACTTTTGAAGCCAAACCAGAAACCTAACTGCGCACTGGACCTGTTACCGGGTCACGACTTGAACCAGAATCCTTTTTCTTCAAAGAAAGATTGGCAAATTGATTGTCGAGGTCTTTGCTCGAACTACGTCGATGACTAG

Protein sequence

MHMKMLTPEKPGNSGKELKGREQGHRQVPTLEEISSSSVLHNGTIVFVHQFGKNYPGTTLLKPNQKPNCALDLLPGHDLNQNPFSSKKDWQIDCRGLCSNYVDD

Homology

[Close]

BLAST of Csor.00g243880 vs. NCBI nr
Match: KAG6576991.1 (hypothetical protein SDJN03_24565, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224 bits (572), Expect = 3.30e-74
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MHMKMLTPEKPGNSGKELKGREQGHRQVPTLEEISSSSVLHNGTIVFVHQFGKNYPGTTL 60
           MHMKMLTPEKPGNSGKELKGREQGHRQVPTLEEISSSSVLHNGTIVFVHQFGKNYPGTTL
Sbjct: 1   MHMKMLTPEKPGNSGKELKGREQGHRQVPTLEEISSSSVLHNGTIVFVHQFGKNYPGTTL 60

Query: 61  LKPNQKPNCALDLLPGHDLNQNPFSSKKDWQIDCRGLCSNYVDD 104
           LKPNQKPNCALDLLPGHDLNQNPFSSKKDWQIDCRGLCSNYVDD
Sbjct: 61  LKPNQKPNCALDLLPGHDLNQNPFSSKKDWQIDCRGLCSNYVDD 104

The following BLAST results are available for this feature:

BLAST of Csor.00g243880 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g243880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576991.1	3.30e-74	100.00	hypothetical protein SDJN03_24565, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g243880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g243880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g243880.m01	Csor.00g243880.m01	mRNA