Csor.00g242860 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g242860
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr16: 2563513 .. 2564921 (+)
RNA-Seq ExpressionCsor.00g242860
SyntenyCsor.00g242860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTGGGAATCTTTAGCTGCTGGATGGAAGTGTATGTGTATCCAACTTGCCGGTTTCTTGACAATTCAAGTTCTGCTTCCTGTCTTATTGATCATCTCCAGTGGCGAACTTCATCAGAGTGATGGACTTCAACATCCAGAGGAATGCTGCGGAATTATCGTGGCATCGGAATTAATTCGAGGGTAAACTATATTGGTGTAGTGCTGGTGTCACCATGAATGATCCTTCTACCTTCTAATTCAATGGTTTAAGATGCCCAAAATTGATGCCCAAAATTATACCCAGTATGATCGTTTCATTACTATACATGTAACTTATATTTGGCCACTTTTGATGTGTAAATCTTCAAGCTACGTGCCAGCCCATAGCTCAGCGCAATGACAAGTTCTTTTAGTTTTTGTCTTACAGCTGGGGGGTATTACGACAGGTTTGCTAAGTGTTCCGGCATAGAGCGAACCGGTGATGCCATTTAAGTGTCTAGTATGATGTGAAGTTGAAAATTGAATTACTTTAGGATTGTGTCGTTTTCATTGTTCAGCAGCATACTCAAGTGGAATGCTTTTGGTGACAGGGGAAGATTCAATGGATCTTGGTCCTTATGATATCACTTGATCTAACATATAGTAGAAATTGGATGAAGTTTTGGAGATTTAATTGACGTATAGAAGATTTGCTTCGTTGTGTTTAATAGTGAGCTTGTTTCTTTATTTGTTTGTTTGTTTGTTTTACTTCATCGTTTTGTTGCAGGGAGGAGACCAGTAACTATCTTTCCTATAATATTGGGTATACGATTAAGCGTGTATATAGATTTTTCTCTTTTCATTGCTATCTTTGCAAATTGCCGATTCTTTTGATTTCGTTTTCAATTATTATTTTATAAATCTACCATTGTGTGGAGAATAAAACTTCATGTGACGTTCCATGCAGTGTCATTGGAAGATTTATGTTGTATTTCTTATCGAGTTTCAATGCGTAGGTTGGAAATAACAATTTTCTGCAGGTCTTTTTGGTCACTGTGAAAGTTTAGAATCTCGATGACAGAAAGTTCAAAATATCGTTATTGAGACAAAATATGAGAATTGAAAATCATTGTTATTGTCTCAAGATATAAAATTTTAGTTCCTTTACTAGCAAACAGCCTTTGATTTTGAGAATTGATGTTGTAGAGTTGATATGCGAGAAAGCATCAATAGCCTGCTTCATTGGTTATGGGCATAGTAGGTATAGACCCTGTAACTAAAAGGCAATGATTTTTTTTTTTCTTTTCAGTTTAGATAACCCTGTTTATGTATATGCAATTAAAATTAAGATTCTAGTCTCTAAGATGTTCACTATTTCATGTCCATTTCAGGTATCTCCAAAGTTCATTAGCCATAGGCTCATTTCGCCATGGATATAGATCTTAG

mRNA sequence

ATGCTGTGGGAATCTTTAGCTGCTGGATGGAAGTGTATGTGTATCCAACTTGCCGGTTTCTTGACAATTCAAGTTCTGCTTCCTGTCTTATTGATCATCTCCAGTGGCGAACTTCATCAGAGTGATGGACTTCAACATCCAGAGGAATGCTGCGGAATTATCGTGGCATCGGAATTAATTCGAGGCAAACAGCCTTTGATTTTGAGAATTGATGTTGTAGAGTTGATATGCGAGAAAGCATCAATAGCCTGCTTCATTGGTTATGGGCATAGTAGGTATCTCCAAAGTTCATTAGCCATAGGCTCATTTCGCCATGGATATAGATCTTAG

Coding sequence (CDS)

ATGCTGTGGGAATCTTTAGCTGCTGGATGGAAGTGTATGTGTATCCAACTTGCCGGTTTCTTGACAATTCAAGTTCTGCTTCCTGTCTTATTGATCATCTCCAGTGGCGAACTTCATCAGAGTGATGGACTTCAACATCCAGAGGAATGCTGCGGAATTATCGTGGCATCGGAATTAATTCGAGGCAAACAGCCTTTGATTTTGAGAATTGATGTTGTAGAGTTGATATGCGAGAAAGCATCAATAGCCTGCTTCATTGGTTATGGGCATAGTAGGTATCTCCAAAGTTCATTAGCCATAGGCTCATTTCGCCATGGATATAGATCTTAG

Protein sequence

MLWESLAAGWKCMCIQLAGFLTIQVLLPVLLIISSGELHQSDGLQHPEECCGIIVASELIRGKQPLILRIDVVELICEKASIACFIGYGHSRYLQSSLAIGSFRHGYRS
Homology
[Close]
BLAST of Csor.00g242860 vs. NCBI nr
Match: KAG6577093.1 (hypothetical protein SDJN03_24667, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219 bits (559), Expect = 4.60e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   MLWESLAAGWKCMCIQLAGFLTIQVLLPVLLIISSGELHQSDGLQHPEECCGIIVASELI 60
           MLWESLAAGWKCMCIQLAGFLTIQVLLPVLLIISSGELHQSDGLQHPEECCGIIVASELI
Sbjct: 1   MLWESLAAGWKCMCIQLAGFLTIQVLLPVLLIISSGELHQSDGLQHPEECCGIIVASELI 60

Query: 61  RGKQPLILRIDVVELICEKASIACFIGYGHSRYLQSSLAIGSFRHGYRS 109
           RGKQPLILRIDVVELICEKASIACFIGYGHSRYLQSSLAIGSFRHGYRS
Sbjct: 61  RGKQPLILRIDVVELICEKASIACFIGYGHSRYLQSSLAIGSFRHGYRS 109

[Close]
BLAST of Csor.00g242860 vs. NCBI nr
Match: KAG7015098.1 (Protein FAR-RED IMPAIRED RESPONSE 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (321), Expect = 1.23e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MLWESLAAGWKCMCIQLAGFLTIQVLLPVLLIISSGELHQSDGLQHPEECCGIIVASELI 60
          MLWESLAAGWKCMCIQLAGFLTIQVLLPVLLIISSGELHQSDGLQHPEECCGIIVASELI
Sbjct: 1  MLWESLAAGWKCMCIQLAGFLTIQVLLPVLLIISSGELHQSDGLQHPEECCGIIVASELI 60

Query: 61 RG 62
          RG
Sbjct: 61 RG 62

The following BLAST results are available for this feature:
BLAST of Csor.00g242860 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g242860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577093.14.60e-72100.00hypothetical protein SDJN03_24667, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015098.11.23e-31100.00Protein FAR-RED IMPAIRED RESPONSE 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Csor.00g242860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g242860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g242860.m01Csor.00g242860.m01mRNA