Csor.00g242740 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g242740
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionSWIB domain-containing protein
LocationCsor_Chr16: 2617902 .. 2620370 (+)
RNA-Seq ExpressionCsor.00g242740
SyntenyCsor.00g242740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACCGGCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCAATCACGATCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACATCAGGTCTCTCTCTCCATCTCTCATGATTTTGCAGAATTTTTAAGCTACGAATGATGAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGCCTGGCCTATTTCAGGGGAACGACTTTCCTTTCTTCAAGTTTTTGAAATTAGGTTTTAATGTAATGATATTCCGATGAAGAAAATCTAATATACTGAATGTATTTGGTTCGATTTTTGAGTTTATAGTGCTACTTTCTACCTTCTGCTTCCCGTTCTTTATGATCGGACTCCTTTTCTTTTACTTTCCAGTTTGTACTGATGTATAAGTATCACTGCTGTTATTGCTTGTGTTCATCTTGTCTTTCATTCTGTAATCTGTTGTCTTGACGTTAATACATCACTTTGATCAGTTGTATTGTACGTCTGTTTTCTTAGCAAACACATCTTTCGGTTGCAATTGTCTTGTCCACTGCTGACTTTTAGCTATTGCCATTATGTAAATCTTTATTCACATGTTAATTGTCTTATCAGATTAGTTAAATCAAAATTCTTTGCTAATAAAGGATCGGTTTGCTTTATTCCTGTTCCCACTACCTTAGTATTGGTATCATATTGCTTTAAGATGCGACAATGAGGAGATTTACTTTTCTAAGGAAATTCATATATCTCCGTCTTAGTGAATGAGGATTTAATGGAGAGGGGACAAGTTGGCTGAGAATGATTGGTAAGATAATATTCCAATTTTAATGTTGAACTATGTTTTGGGACAAGTTTAAGCCTTTAAGAATAATGGTTTGTGGTAGATGGTTGTTGTATTTCAGAAAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAAAAGAGATTCATTAACTTAGTGGTTAGCTTGTTTGAGCAGATGAGACCTTCTGTGTATTTTGATTACTGAAAGATAAAGAAAGTATTATAACAGGTGAATCTACTATGTTGAGAATTTCAGTTGACAGTTCCTTTAGGAAGAGAGTGGGAGGTTGATAGAAGAAGAGAGAACCTTAGTTATATTCAAACTTGAAGACCCTAAATATCTCGAACCGTGCAGAAGCAAATCCGACAATCAGACAAATGTTGCTGTGAACTATTGGCAAACTCTAGGAAGCACGGATACAACATGACATTGACACAGCAAGGGACGTTTATTAAAATATACATTTTAAAAATTATATATCATTTTTGTATTAGAAGGAAATTCAAAGTCAATGAGTTTATACATCTAAATGCTTAAAAATTAGTTTGATTTATTTTACTTTAAGTGTCTACAGCGTCTATTGCACTAACAAGTGTTTGGTACGTGTCTAACAAGTGTTGCAGTGTCAAGTGTCCGACACATGTCAGACATGGATACGCTAGCCATACTAAAGTGTTCGTGCTTCTTAGGGCATACTCCTCAAATACTGAAATTATTACTCATTATTCCCTTTAGTTTTTGCGCAAAGAGTTTTAGATTTCATCCTGAAAATAGGATTATCTTGATTGAACTTCTATTCTTGATCAACTTTGTTTAGCCTCACATTTATTTTAGATTTGTTTTGTTCACTAAAAGGTAGAAATATTTGCTTGCTCGTGTATTTCTTTTTGGGATGGAATTGTAGATGTGTTGAGAGTTATTTGGTATGCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGTAAAGACAGAGTTGCGATGGCAGAGATTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAATTCGCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGAACGTCAAAAAGATATCAGGTCATCAGGGATCTACATTGTTTTTTTTTCATCTTTTTTTGTTAAAACCACACGTGAAATCGTTGCTCTTTTTCTTTCCTAAACTATGTCTTGTTCAGGTAATAACATGCTAAACTTTGTCCTGTATTTACATCATTTTCCTTTTTTCTTTTCCCTACATGTTAGGCATGACAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTGGTAACATCTTTTTACTCTTCCATTCCTCTTCAAAAACCTCGTGCTTTTCATATCTTGATCTTGCATTTGTCTGTTCAATATCACTGTCAGTGCTGCAGAAGTGTACTTTTTGAGTTGA

mRNA sequence

ATGGCAGCCACCGGCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCAATCACGATCTGGTGACTGCCAAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACATCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGCATGACAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTGTGCTGCAGAAGTGTACTTTTTGAGTTGA

Coding sequence (CDS)

ATGGCAGCCACCGGCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCAATCACGATCTGGTGACTGCCAAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCGTTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACATCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGCATGACAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTGTGCTGCAGAAGTGTACTTTTTGAGTTGA

Protein sequence

MAATGGGNEKCLTRSLRFKGPITITINHDLVTAKKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFCAAEVYFLS
Homology
[Close]
BLAST of Csor.00g242740 vs. NCBI nr
Match: KAG6577105.1 (hypothetical protein SDJN03_24679, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (624), Expect = 8.05e-82
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0 

Query: 1   MAATGGGNEKCLTRSLRFKGPITITINHDLVTAKKIQLKPQLCKFLGIPLVAPRGDIPIL 60
           MAATGGGNEKCLTRSLRFKGPITITINHDLVTAKKIQLKPQLCKFLGIPLVAPRGDIPIL
Sbjct: 1   MAATGGGNEKCLTRSLRFKGPITITINHDLVTAKKIQLKPQLCKFLGIPLVAPRGDIPIL 60

Query: 61  ITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFCAAEVYFLS 114
           ITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFCAAEVYFLS
Sbjct: 61  ITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFCAAEVYFLS 114

[Close]
BLAST of Csor.00g242740 vs. NCBI nr
Match: KAG7015106.1 (hypothetical protein SDJN02_22739 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158 bits (400), Expect = 5.08e-48
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 21  PITITINHDLVTAKKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWT 80
           P  I++   L++ +KIQLKPQLCKFLGIPL+APRGDIPILITKFLKFYQHQSPGIGKDWT
Sbjct: 3   PAKISVGARLLS-QKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWT 62

Query: 81  WEENLKATLHGMTADDGKVDRLWPF 105
           WEENLKATLHGMTADDGKVDRLWPF
Sbjct: 63  WEENLKATLHGMTADDGKVDRLWPF 86

[Close]
BLAST of Csor.00g242740 vs. NCBI nr
Match: XP_022136393.1 (uncharacterized protein LOC111008113 [Momordica charantia])

HSP 1 Score: 100 bits (249), Expect = 9.63e-25
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0 

Query: 21 PITITINHDLVTAKKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWT 80
          P  IT+   +++ KK+Q KPQLCKFLGIPLV+PRGDIPILI+KFLK YQ QSPG+ KD  
Sbjct: 3  PAKITVAAHILS-KKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQSPGLRKDRI 62

Query: 81 WEENLKATLHG 91
          WEENLKA L G
Sbjct: 63 WEENLKAILCG 72

[Close]
BLAST of Csor.00g242740 vs. NCBI nr
Match: CAB4296040.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 65.5 bits (158), Expect = 1.13e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 31 VTAKKIQLKP---QLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKA 90
          V A K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK 
Sbjct: 24 VIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRTWEENLKT 83

[Close]
BLAST of Csor.00g242740 vs. NCBI nr
Match: CAB4265447.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 65.5 bits (158), Expect = 1.13e-10
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 31 VTAKKIQLKP---QLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKA 90
          V A K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK 
Sbjct: 24 VIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRTWEENLKT 83

[Close]
BLAST of Csor.00g242740 vs. ExPASy TrEMBL
Match: A0A6J1C7G5 (uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008113 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 4.66e-25
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 0 

Query: 21 PITITINHDLVTAKKIQLKPQLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWT 80
          P  IT+   +++ KK+Q KPQLCKFLGIPLV+PRGDIPILI+KFLK YQ QSPG+ KD  
Sbjct: 3  PAKITVAAHILS-KKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQSPGLRKDRI 62

Query: 81 WEENLKATLHG 91
          WEENLKA L G
Sbjct: 63 WEENLKAILCG 72

[Close]
BLAST of Csor.00g242740 vs. ExPASy TrEMBL
Match: A0A314YMV5 (SWIB domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_14846 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.49e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 31 VTAKKIQLKP---QLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKA 90
          V A K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK 
Sbjct: 24 VIAAKVKTKTTCSELCKFLGIP-EPTRSPTALLISRFISLYNHQSPGI-KDRTWEENLKT 83

[Close]
BLAST of Csor.00g242740 vs. ExPASy TrEMBL
Match: A0A314UH77 (SWIB domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_40121 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.49e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 31 VTAKKIQLKP---QLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKA 90
          V A K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK 
Sbjct: 24 VIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRTWEENLKT 83

[Close]
BLAST of Csor.00g242740 vs. ExPASy TrEMBL
Match: A0A6J5W378 (SWIB domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS7562 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.49e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 31 VTAKKIQLKP---QLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKA 90
          V A K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK 
Sbjct: 24 VIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRTWEENLKT 83

[Close]
BLAST of Csor.00g242740 vs. ExPASy TrEMBL
Match: A0A6J5TQI5 (SWIB domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS7567 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.49e-11
Identity = 35/64 (54.69%), Postives = 42/64 (65.62%), Query Frame = 0 

Query: 31 VTAKKIQLKP---QLCKFLGIPLVAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKA 90
          V A K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENLK 
Sbjct: 24 VIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRTWEENLKT 83

The following BLAST results are available for this feature:
BLAST of Csor.00g242740 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g242740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6577105.18.05e-82100.00hypothetical protein SDJN03_24679, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015106.15.08e-4885.88hypothetical protein SDJN02_22739 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022136393.19.63e-2569.01uncharacterized protein LOC111008113 [Momordica charantia][more]
CAB4296040.11.13e-1054.69unnamed protein product [Prunus armeniaca][more]
CAB4265447.11.13e-1054.69unnamed protein product [Prunus armeniaca][more]
BLAST of Csor.00g242740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7G54.66e-2569.01uncharacterized protein LOC111008113 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A314YMV55.49e-1154.69SWIB domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=... [more]
A0A314UH775.49e-1154.69SWIB domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=... [more]
A0A6J5W3785.49e-1154.69SWIB domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS75... [more]
A0A6J5TQI55.49e-1154.69SWIB domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS7567 ... [more]
BLAST of Csor.00g242740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 31..91
NoneNo IPR availablePANTHERPTHR13844:SF42TRANSCRIPTION REGULATOR SWI/SNF-BAF60B FAMILY-RELATEDcoord: 31..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g242740.m01Csor.00g242740.m01mRNA