Csor.00g242510 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCCAAAGCTTACTGAGGTCTCGCAGCACTTCGATCGCTTCAAAGCTGCGTTTGTTAGGCACGATTACGATTCTTGTAGCAATCTCCTCCCTCAGCTGAAGGTGTCGATTTTATTTCAGAACCCTAATGTTTCTCCCTATGACTCCTCCGTTCGATACGTCACTGGAGTTTTAGCGTGTTTTCTTCTTTTCTCGAGGAGTCGTTTTGATAATGTTGTTCAAGTTTCCGAATCTTTCTTCAATTTATTTTTGCAGGTTTTTTTAACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACGCCCAATGCAGTCCATGAATTGACGTTAGCTAGTAAGAATTCATACTCCATGCCGTAGTTCTATAGCTCTTATTGGCTCGCCTATATTTTTCTGTACGAATAATTTGGAATAGTTTGCTGTCGTTTGGGTCTTGAAATTACTCAACTGAAGAGAAACTTATAGTCTGGCCATGCATCTTCATAGTAACATATGGAGACTTATATTTGTGTGGAGCTTGGTAGTTGTTATTCAATTGCATGATTAGTGACTGTAAAGCTACAACCCGAACTGCAAGCATAAGCTACTAGATTCTGTAATCTACAATGATAAGATTATTATGGAGCCTTGGAACCATTTTCCCATCTTAGAAGCTAGATGACCGATACCAGTCAATGAAAATTTGTCTAACGTTTTAATGAGCCATTGAAGCAATTTTACTTAGATGTACGAAATATGAGAAACAAATGTCGTAAATTGATTAACTATCTAATAAAAATTTGAGAATCACAGAAACTTGATCACTTGGACGTGGATAAATAATTTACTTTCTGGGTCATTGAATATTCTGATGCAGAATTTTCTGTACGGAAGAGTTTGTTATCTGTATGGAACTTTGGTTTTTTCTTTCCTTGTATAGTCATTTTCTAAATTTAAATCTTGTACAATTTTTATGTTCACTTGGGGACTTCAGGGGATATATACGAACATGCTGTATTACTTAGTGTGAAGATTGAAGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGGTATGTTTCTCTTAAGTGAAATTTGAATTCCTAAATTCTATCTAATTGATTAAATTCTCGGTATATTTGCTTGTTTATTCAGACTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGCGTAAGAGTTAAATGATTTATACTCATTCACGTAGATATAAATTTAACTGAAGTTCTATTGAGCTATTTGATTCTTTGTTTATTTAAAGTGAAATATCATCGAAAACAAAAGCTGCTTATTAATATTATTTGCAATTATAATTCTCTTAGTTCGTCAGTATTCACTAGTTTACTTTAATGTATTATCTTCTTTCTTTCATGTAAATAAGTTAATTAATTCAACTGAACTGATTCAGTGAGATGGTGGACTGACAATGAATTGCTGCAGATTAGCAAATGGATCCAAGCTTATCAGACAAACATCTTCTATGAGTTATATTTATGTTCAAAACTGATATCTAATCTATAACTTTAGGCTGAGCTTCCTGTGGTTATCTTGCATTTTACCAGAATTGCCACATTGAGATCACTTGACATTACCTTTTGAGTTTGAACTAATTTTTTCTCATGAATTTTTTTTTTTTTTTTTTTTGGACCAGTAACCGCCTTCCGCCATCTCCTCAGGAATATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTACAGAACAGAATTGCTGAATTTCATACTGAACTTGAACTTCTCTCCACCTCTGCTCTGGAGAACCCATGCATTAAACATGCTGTAGAGCTGGAGCAATCTTTCATGGAAGGGGCTTACAACCGTGTATTGAGTGCTCGACAGACAGTGCCACATGAAACTTTTGGTTATTTTATGGACCTCCTTGCAAAGACTGTAAGGTAACTCATCTAAATAAGGTGTCTAAGTAATATAGTGATAGATGAGAAATCCCACCTCCTTCGAAGTGTTTGCCGAATTCTCTCTTACTCTCTCTTCTTACTTGGGGTCACTGACAAGTAGCAGTTCCATTTCATTCTTAGTTTCTATTCATAGTTTGCGTCTTTTCTGCCACTTCCAGGGATGAAATAGCCGGTTGCAGTGAAAAGGCATATGATTATCTTTCAATAAGTAATGCCCGCCAAATGCTGCTGTTTTCCTCTGACCAGGAACTTTTGGAATATGTCAAGGAGGTAACCTCTGTTAAGTCTGTTGGATGGTATCTAGACATCGATAATCTACGTAATCACTAAAAAGTTTTAGGTTACCAAAGTTTTTTTTTTCATTGAACTGCGAAACATTTACCATGATGCGGTGCACATAGTCCATTGAACTGATCTGCAGTATGTTGAGTCCTACCCTGGCTAACTAAGGGGATGATCATGAGTTTATAAGTAAGGAATACATTTTCATTGGTATGAGGCCTTTTGGGAAAACGAAAAACTAAAACCATTAGATCTTATGCTCAAAGTGGACAATATCATATCATATTATGAAGGGTCCGTGGTTTCTAACACAGTATGTAGGTTAGGAGTTGTTTCCATTGGAGGGTTTGCACCTGTTGATGGAAATCTTATGTTTCAATGCAGGAGCATCCCGAGTGGGAGATAACGAACGGCATCTTATATTTCCAGAAGGTGAAAGAATCTGCACCTTGCAAGGAAATTCCTTCTCTTCAACTTATCAACCAAACACTCAGTTACGCAAGGGAGTTGGAGCGGATTGTATGAACCAAGCTAGCAGCTTCTCAGAATTGTCATCTGCTGATTTACAACATGCCAAGGTTTTATGATTCTCCCTCCACCCTCTTATGATCATTATGGGGTTTTTTTTTTTTTCTTTTTCCAAACAAAGTTATTTTTTCGTTGACATCGACTCAGATTTGCATCGAATTATCTTGGTATCTTCATTAACATAAGATGACTGTTCATGCATTTTCTTTTCCAAGTGTTTGTTTACAATTACATATCCTCGGCATCTAGTTAGATTCCAACGTCAAGGAAGTCGTTATCGTTTGATTATTCCTATGGTATTAAAACATGGCCTCAAACATTACTTTGAAGCTCAAGTTTACAAAATGGGTTTCCATGTATTCGAATCTAATAAAATTGTGATTCAAATACTAAGGTGTTTGGAATTGCAGAGCAGAGTTGCTTCAGGTTCGAAAATTTTTGAAGCGATGAAAAAATGA ATGGATCCAAAGCTTACTGAGGTCTCGCAGCACTTCGATCGCTTCAAAGCTGCGTTTGTTAGGCACGATTACGATTCTTGTAGCAATCTCCTCCCTCAGCTGAAGGTTTTTTTAACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACGCCCAATGCAGTCCATGAATTGACGTTAGCTAGGGATATATACGAACATGCTGTATTACTTAGTGTGAAGATTGAAGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGTAACCGCCTTCCGCCATCTCCTCAGGAATATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTACAGAACAGAATTGCTGAATTTCATACTGAACTTGAACTTCTCTCCACCTCTGCTCTGGAGAACCCATGCATTAAACATGCTGTAGAGCTGGAGCAATCTTTCATGGAAGGGGCTTACAACCGTGTATTGAGTGCTCGACAGACAGTGCCACATGAAACTTTTGGTTATTTTATGGACCTCCTTGCAAAGACTGTAAGGGATGAAATAGCCGGTTGCAGTGAAAAGGCATATGATTATCTTTCAATAAGTAATGCCCGCCAAATGCTGCTGTTTTCCTCTGACCAGGAACTTTTGGAATATGTCAAGGAGGAGCATCCCGAGTGGGAGATAACGAACGGCATCTTATATTTCCAGAAGTTACGCAAGGGAGTTGGAGCGGATTGTATGAACCAAGCTAGCAGCTTCTCAGAATTGTCATCTGCTGATTTACAACATGCCAAGAGCAGAGTTGCTTCAGGTTCGAAAATTTTTGAAGCGATGAAAAAATGA ATGGATCCAAAGCTTACTGAGGTCTCGCAGCACTTCGATCGCTTCAAAGCTGCGTTTGTTAGGCACGATTACGATTCTTGTAGCAATCTCCTCCCTCAGCTGAAGGTTTTTTTAACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACGCCCAATGCAGTCCATGAATTGACGTTAGCTAGGGATATATACGAACATGCTGTATTACTTAGTGTGAAGATTGAAGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGTAACCGCCTTCCGCCATCTCCTCAGGAATATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTACAGAACAGAATTGCTGAATTTCATACTGAACTTGAACTTCTCTCCACCTCTGCTCTGGAGAACCCATGCATTAAACATGCTGTAGAGCTGGAGCAATCTTTCATGGAAGGGGCTTACAACCGTGTATTGAGTGCTCGACAGACAGTGCCACATGAAACTTTTGGTTATTTTATGGACCTCCTTGCAAAGACTGTAAGGGATGAAATAGCCGGTTGCAGTGAAAAGGCATATGATTATCTTTCAATAAGTAATGCCCGCCAAATGCTGCTGTTTTCCTCTGACCAGGAACTTTTGGAATATGTCAAGGAGGAGCATCCCGAGTGGGAGATAACGAACGGCATCTTATATTTCCAGAAGTTACGCAAGGGAGTTGGAGCGGATTGTATGAACCAAGCTAGCAGCTTCTCAGAATTGTCATCTGCTGATTTACAACATGCCAAGAGCAGAGTTGCTTCAGGTTCGAAAATTTTTGAAGCGATGAAAAAATGA MDPKLTEVSQHFDRFKAAFVRHDYDSCSNLLPQLKVFLTGFRSLPPLFEDTPNAVHELTLARDIYEHAVLLSVKIEDQDAFERDFFQLKPYYTDARNRLPPSPQEYPILGLNLLRLLVQNRIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLAKTVRDEIAGCSEKAYDYLSISNARQMLLFSSDQELLEYVKEEHPEWEITNGILYFQKLRKGVGADCMNQASSFSELSSADLQHAKSRVASGSKIFEAMKK Homology
BLAST of Csor.00g242510 vs. ExPASy Swiss-Prot
Match: Q9SGW3 (26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPN12A PE=1 SV=1) HSP 1 Score: 393.7 bits (1010), Expect = 1.8e-108 Identity = 192/240 (80.00%), Postives = 214/240 (89.17%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy Swiss-Prot
Match: Q9FHY0 (Putative 26S proteasome non-ATPase regulatory subunit 8 homolog B OS=Arabidopsis thaliana OX=3702 GN=RPN12B PE=5 SV=2) HSP 1 Score: 275.8 bits (704), Expect = 5.4e-73 Identity = 148/240 (61.67%), Postives = 173/240 (72.08%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy Swiss-Prot
Match: P02889 (Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum OX=44689 GN=psmD8-1 PE=2 SV=2) HSP 1 Score: 167.5 bits (423), Expect = 2.1e-40 Identity = 86/232 (37.07%), Postives = 146/232 (62.93%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy Swiss-Prot
Match: Q9CX56 (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus OX=10090 GN=Psmd8 PE=1 SV=2) HSP 1 Score: 157.5 bits (397), Expect = 2.2e-37 Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy Swiss-Prot
Match: Q5RE15 (26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii OX=9601 GN=PSMD8 PE=2 SV=2) HSP 1 Score: 156.4 bits (394), Expect = 4.8e-37 Identity = 86/196 (43.88%), Postives = 121/196 (61.73%), Query Frame = 0
BLAST of Csor.00g242510 vs. NCBI nr
Match: KAG6577127.1 (26S proteasome non-ATPase regulatory subunit 8-like A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 559 bits (1440), Expect = 9.41e-201 Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0
BLAST of Csor.00g242510 vs. NCBI nr
Match: XP_022931550.1 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Cucurbita moschata]) HSP 1 Score: 476 bits (1226), Expect = 2.42e-168 Identity = 233/240 (97.08%), Postives = 238/240 (99.17%), Query Frame = 0
BLAST of Csor.00g242510 vs. NCBI nr
Match: XP_022985301.1 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Cucurbita maxima]) HSP 1 Score: 474 bits (1220), Expect = 1.99e-167 Identity = 232/240 (96.67%), Postives = 238/240 (99.17%), Query Frame = 0
BLAST of Csor.00g242510 vs. NCBI nr
Match: XP_023552682.1 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 474 bits (1219), Expect = 4.36e-167 Identity = 233/240 (97.08%), Postives = 237/240 (98.75%), Query Frame = 0
BLAST of Csor.00g242510 vs. NCBI nr
Match: XP_038876610.1 (26S proteasome non-ATPase regulatory subunit 8 homolog A [Benincasa hispida]) HSP 1 Score: 469 bits (1206), Expect = 2.70e-165 Identity = 227/240 (94.58%), Postives = 237/240 (98.75%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy TrEMBL
Match: A0A6J1EZQ3 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like OS=Cucurbita moschata OX=3662 GN=LOC111437694 PE=3 SV=1) HSP 1 Score: 476 bits (1226), Expect = 1.17e-168 Identity = 233/240 (97.08%), Postives = 238/240 (99.17%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy TrEMBL
Match: A0A6J1J7S1 (26S proteasome non-ATPase regulatory subunit 8 homolog A-like OS=Cucurbita maxima OX=3661 GN=LOC111483349 PE=3 SV=1) HSP 1 Score: 474 bits (1220), Expect = 9.62e-168 Identity = 232/240 (96.67%), Postives = 238/240 (99.17%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy TrEMBL
Match: A0A1S3BSK8 (26S proteasome non-ATPase regulatory subunit 8 homolog A OS=Cucumis melo OX=3656 GN=LOC103493070 PE=3 SV=1) HSP 1 Score: 467 bits (1201), Expect = 7.55e-165 Identity = 225/240 (93.75%), Postives = 237/240 (98.75%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy TrEMBL
Match: A0A5D3D1F4 (26S proteasome non-ATPase regulatory subunit 8-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003260 PE=3 SV=1) HSP 1 Score: 467 bits (1201), Expect = 4.43e-164 Identity = 225/240 (93.75%), Postives = 237/240 (98.75%), Query Frame = 0
BLAST of Csor.00g242510 vs. ExPASy TrEMBL
Match: A0A5A7TS32 (26S proteasome non-ATPase regulatory subunit 8-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002620 PE=3 SV=1) HSP 1 Score: 466 bits (1198), Expect = 1.27e-163 Identity = 224/240 (93.33%), Postives = 237/240 (98.75%), Query Frame = 0
BLAST of Csor.00g242510 vs. TAIR 10
Match: AT1G64520.1 (regulatory particle non-ATPase 12A ) HSP 1 Score: 393.7 bits (1010), Expect = 1.3e-109 Identity = 192/240 (80.00%), Postives = 214/240 (89.17%), Query Frame = 0
BLAST of Csor.00g242510 vs. TAIR 10
Match: AT5G42040.1 (regulatory particle non-ATPase 12B ) HSP 1 Score: 275.8 bits (704), Expect = 3.9e-74 Identity = 148/240 (61.67%), Postives = 173/240 (72.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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