Csor.00g242210 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g242210
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	arabinogalactan peptide 22-like
Location	Csor_Chr16: 2913419 .. 2914366 (+)
RNA-Seq Expression	Csor.00g242210
Synteny	Csor.00g242210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCCAGGATGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGTTAGTTCTCTTCTTAATTTCTATTTCTTTAAGTTTTGTTTTGTATTTTTGTTCTAGATCTGTGTGGACTGTTGATCTCTGGCTTGAAATTAGTTTTGTTTGTTTATTCTTTGTTTCTGGATTATTTTGCGAGTTTCAGTTTCTGAGTTACCAAAACATTGTTTCGGTTTCCGGTTCTTCTTTGTTTCCGGATTATTTTGAGAGTTTCAGTTTCTGAGTTACCAAAACATTGTTTCGGTTTCCGTTTCTTGGTGAATTGTGATTAAAGATATTAAGCGCAAATCTTCACTTTTTTTTCCCCTTTAGTAGTTTTGATTGTTTGTTCAAGCCTTGGTGGATCTATTTTCCTACACGTATGTGTATTCTCAATTTTGCGAGAGTTCATTAGCATCAATTTGTGGACCAAATGTTAGAAATGACAAATAATACAGAAGCTATTTTCTTGTATTCGTAACAACGGCATAAAGTTATCTTATAGTTTCTATAAACTATTAATTTGCGAGTGTAATTAAACCTATTGCCATGATTATGAAAAGTAATTCTGTTTGCTATTTGGTTGGCCTGACTACTATTACGTTACCTTTTAGAACAAAGGTGTTTGGTCTTGATGTCTTATCTTCTCAGAAATTCATTTTAAATAGTTCTTTGAAATGCAAAATCCTAAGGAATTAGGGTTGAAATTCATAGATTTCTTAGTGAACTTAATTGGTATCTTTAAAACGTCATTTACAGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA

mRNA sequence

ATGGCGGTTTCCAGGATGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA

Coding sequence (CDS)

ATGGCGGTTTCCAGGATGTCTTTTGGATTTGTGGCTGCCGCTGCGCTCATCTTTGCCATCTTCTTGCCGGTTGCTCAGCCTCAGTCCTTGGCTCCGGCACCCGCTCCCACCAGCGACGGGACATCCATAGACCAAGGGATAGCTTATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAACGCTGACTTATCCAACAGCTTCTAA

Protein sequence

MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

Homology

[Close]

BLAST of Csor.00g242210 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 7.7e-16
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          M+ SR+ FG     ++IFAI LP+A  QS APAPAPTSDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]

BLAST of Csor.00g242210 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-15
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4  SRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]

BLAST of Csor.00g242210 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-14
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 4  SRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]

BLAST of Csor.00g242210 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-12
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

[Close]

BLAST of Csor.00g242210 vs. NCBI nr
Match: KAG6577157.1 (Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015155.1 Arabinogalactan peptide 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132 bits (331), Expect = 1.84e-38
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of Csor.00g242210 vs. NCBI nr
Match: XP_022931316.1 (arabinogalactan peptide 22-like [Cucurbita moschata])

HSP 1 Score: 129 bits (325), Expect = 1.52e-37
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of Csor.00g242210 vs. NCBI nr
Match: XP_022985432.1 (arabinogalactan peptide 20 [Cucurbita maxima])

HSP 1 Score: 127 bits (320), Expect = 8.80e-37
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLS+SF
Sbjct: 61 LIHNADLSSSF 71

[Close]

BLAST of Csor.00g242210 vs. NCBI nr
Match: XP_038882280.1 (arabinogalactan protein 22-like [Benincasa hispida])

HSP 1 Score: 122 bits (306), Expect = 1.20e-34
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVS  SFGF+AAAALIFAIFLPVAQP SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSTASFGFLAAAALIFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSN+F
Sbjct: 61 LIHNADLSNTF 71

[Close]

BLAST of Csor.00g242210 vs. NCBI nr
Match: XP_022136454.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 122 bits (306), Expect = 1.20e-34
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of Csor.00g242210 vs. ExPASy TrEMBL
Match: A0A6J1ETC6 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 7.35e-38
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of Csor.00g242210 vs. ExPASy TrEMBL
Match: A0A6J1J4V7 (arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 4.26e-37
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLS+SF
Sbjct: 61 LIHNADLSSSF 71

[Close]

BLAST of Csor.00g242210 vs. ExPASy TrEMBL
Match: A0A6J1C4C2 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 5.83e-35
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of Csor.00g242210 vs. ExPASy TrEMBL
Match: A0A6J1FMT5 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111446885 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 1.80e-32
Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTY
Sbjct: 1  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTY 60

Query: 61 LIHNADLSNS 70
          LIH+ADL +S
Sbjct: 61 LIHSADLVSS 70

[Close]

BLAST of Csor.00g242210 vs. ExPASy TrEMBL
Match: A0A5D3CYF3 (Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004150 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 2.68e-31
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SF  +AA ALIFAIFLPVA P SLAPAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFELLAATALIFAIFLPVAHPLSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNS 70
          LIHNADLSN+
Sbjct: 61 LIHNADLSNN 70

[Close]

BLAST of Csor.00g242210 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-17
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          M+ SR+ FG     ++IFAI LP+A  QS APAPAPTSDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]

BLAST of Csor.00g242210 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-16
Identity = 44/67 (65.67%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 4  SRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A  QSLAPAP+PTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]

BLAST of Csor.00g242210 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-16
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 4  SRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A  QSLAPAPAPTSDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]

BLAST of Csor.00g242210 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 73.6 bits (179), Expect = 7.4e-14
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+AQ  S +PAPAPTSDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

The following BLAST results are available for this feature:

BLAST of Csor.00g242210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T8	7.7e-16	71.43	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9M373	2.2e-15	65.67	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
O82337	1.1e-14	64.71	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9FK16	1.0e-12	63.49	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of Csor.00g242210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577157.1	1.84e-38	100.00	Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022931316.1	1.52e-37	98.59	arabinogalactan peptide 22-like [Cucurbita moschata]	[more]
XP_022985432.1	8.80e-37	97.18	arabinogalactan peptide 20 [Cucurbita maxima]	[more]
XP_038882280.1	1.20e-34	91.55	arabinogalactan protein 22-like [Benincasa hispida]	[more]
XP_022136454.1	1.20e-34	92.96	arabinogalactan peptide 22-like [Momordica charantia]	[more]

BLAST of Csor.00g242210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETC6	7.35e-38	98.59	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE...	[more]
A0A6J1J4V7	4.26e-37	97.18	arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1	[more]
A0A6J1C4C2	5.83e-35	92.96	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 P...	[more]
A0A6J1FMT5	1.80e-32	88.57	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111446885 PE...	[more]
A0A5D3CYF3	2.68e-31	87.14	Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Csor.00g242210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24105.1	5.5e-17	71.43	arabinogalactan protein 41	[more]
AT3G61640.1	1.6e-16	65.67	arabinogalactan protein 20	[more]
AT2G46330.1	7.9e-16	64.71	arabinogalactan protein 16	[more]
AT5G53250.1	7.4e-14	63.49	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 31..63 e-value: 2.2E-18 score: 65.8
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..70
None	No IPR available	PANTHER	PTHR33374:SF34	ARABINOGALACTAN PROTEIN 22	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g242210.m01	Csor.00g242210.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane