Csor.00g241610 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g241610
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionAnkyrin repeat-containing protein-like
LocationCsor_Chr01: 4961476 .. 4961799 (+)
RNA-Seq ExpressionCsor.00g241610
SyntenyCsor.00g241610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACAAAATTCCCAGCTGAGTTCACCAATTTCATCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAACTTATAGCGCTATTGAATGAGTTGCCTGCCAACACACCATCAGTTTCCAGGAACTCTCTGTACTTCACTTTGGTCTTCGCATTAAGCGGCATGCTCTCGTCTTATGTGTCGTTGGTAAAAGCTTTGACGCCGGAGCCGATGATGCCCCGGGTCGCCGTTGTTCTGCCGCTTACTCTTAGCATTGGTGTTGCTTCAATGGGGATTTTATCGTGCATACAGAAGGTACAGCAGAGACGTATGCGTTAA

mRNA sequence

ATGGCCACAAAATTCCCAGCTGAGTTCACCAATTTCATCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAACTTATAGCGCTATTGAATGAGTTGCCTGCCAACACACCATCAGTTTCCAGGAACTCTCTGTACTTCACTTTGGTCTTCGCATTAAGCGGCATGCTCTCGTCTTATGTGTCGTTGGTAAAAGCTTTGACGCCGGAGCCGATGATGCCCCGGGTCGCCGTTGTTCTGCCGCTTACTCTTAGCATTGGTGTTGCTTCAATGGGGATTTTATCGTGCATACAGAAGGTACAGCAGAGACGTATGCGTTAA

Coding sequence (CDS)

ATGGCCACAAAATTCCCAGCTGAGTTCACCAATTTCATCGTTGGCGTAACAGTGTGCATGATAGTTTCAATGTTGCAACTTATAGCGCTATTGAATGAGTTGCCTGCCAACACACCATCAGTTTCCAGGAACTCTCTGTACTTCACTTTGGTCTTCGCATTAAGCGGCATGCTCTCGTCTTATGTGTCGTTGGTAAAAGCTTTGACGCCGGAGCCGATGATGCCCCGGGTCGCCGTTGTTCTGCCGCTTACTCTTAGCATTGGTGTTGCTTCAATGGGGATTTTATCGTGCATACAGAAGGTACAGCAGAGACGTATGCGTTAA

Protein sequence

MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSSYVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR
Homology
[Close]
BLAST of Csor.00g241610 vs. NCBI nr
Match: KAG6607509.1 (hypothetical protein SDJN03_00851, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195 bits (496), Expect = 1.62e-62
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS
Sbjct: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107
           YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR
Sbjct: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107

[Close]
BLAST of Csor.00g241610 vs. NCBI nr
Match: KAG6607510.1 (hypothetical protein SDJN03_00852, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (492), Expect = 6.62e-62
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS
Sbjct: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107
           YVSLVKALTPEPMMPRVA VLPLTLSIGVASMGILSCIQKVQQRRMR
Sbjct: 61  YVSLVKALTPEPMMPRVAAVLPLTLSIGVASMGILSCIQKVQQRRMR 107

[Close]
BLAST of Csor.00g241610 vs. NCBI nr
Match: KAG6607511.1 (hypothetical protein SDJN03_00853, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194 bits (492), Expect = 6.62e-62
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS
Sbjct: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107
           YVSLVKALTPEP+MPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR
Sbjct: 61  YVSLVKALTPEPIMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107

[Close]
BLAST of Csor.00g241610 vs. NCBI nr
Match: KAG6607508.1 (hypothetical protein SDJN03_00850, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193 bits (491), Expect = 9.40e-62
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MATKFPAEFTNFIVGVTVCM+VSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS
Sbjct: 1   MATKFPAEFTNFIVGVTVCMVVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107
           YVSLVKALTPEPMMPRVA VLPLTLSIGVASMGILSCIQKVQQRRMR
Sbjct: 61  YVSLVKALTPEPMMPRVAAVLPLTLSIGVASMGILSCIQKVQQRRMR 107

[Close]
BLAST of Csor.00g241610 vs. NCBI nr
Match: KAG6607521.1 (hypothetical protein SDJN03_00863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 155 bits (393), Expect = 5.70e-47
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 0 

Query: 14  VGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSSYVSLVKALTPEPM 73
           VGVTVCMIVSMLQ IALLNELPANT SVSRNSLYFTLVFALSGMLSSYVS VKALTPEPM
Sbjct: 2   VGVTVCMIVSMLQFIALLNELPANTLSVSRNSLYFTLVFALSGMLSSYVSSVKALTPEPM 61

Query: 74  MPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107
           +PRVAVVLPLTL  GVASMGILSCIQKVQQRRMR
Sbjct: 62  IPRVAVVLPLTLGNGVASMGILSCIQKVQQRRMR 95

[Close]
BLAST of Csor.00g241610 vs. ExPASy TrEMBL
Match: A0A6J1I8P6 (uncharacterized protein LOC111471995 OS=Cucurbita maxima OX=3661 GN=LOC111471995 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 8.58e-36
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MATKFPAEFT FIVGVTVCMIVSMLQ I LLNELP++TPS+SR  LY+TL FAL  MLSS
Sbjct: 73  MATKFPAEFTTFIVGVTVCMIVSMLQFIVLLNELPSDTPSLSRKYLYYTLFFALGSMLSS 132

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKV----QQRRMR 107
           YVS VKA TPEPM+PR   VL  ++  GV  +GI    QK+    QQRRMR
Sbjct: 133 YVSSVKAYTPEPMIPRAVTVLVFSIGSGVVLVGISLFKQKIEKKIQQRRMR 183

[Close]
BLAST of Csor.00g241610 vs. ExPASy TrEMBL
Match: A0A6J1GBC1 (uncharacterized protein LOC111452618 OS=Cucurbita moschata OX=3662 GN=LOC111452618 PE=4 SV=1)

HSP 1 Score: 122 bits (307), Expect = 5.82e-33
Identity = 70/107 (65.42%), Postives = 80/107 (74.77%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MATKFPAEFT F+VGVTVCMIVSMLQ I L  ELP++TPS+SR  LY+TL FAL  MLSS
Sbjct: 86  MATKFPAEFTTFVVGVTVCMIVSMLQFIVLFVELPSDTPSLSRKYLYYTLFFALGSMLSS 145

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQKVQQRRMR 107
           YVS VKA TPE M  +   VL LT+ IGV  +GI    QK+QQ+ MR
Sbjct: 146 YVSSVKAYTPESMRTQTITVLALTIGIGVVLVGISLFKQKIQQKCMR 192

[Close]
BLAST of Csor.00g241610 vs. ExPASy TrEMBL
Match: A0A0A0KFJ5 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363010 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.65e-14
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MA+K P++F  FIVGVTV M++S  QL+ L+NELP N  S SRN +Y +L   ++ +  +
Sbjct: 68  MASKNPSQFVVFIVGVTVGMVLSAAQLLTLMNELPYNKLSDSRNFIYCSLGITITALGFA 127

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQK 100
           Y S + ALTP  M+  V +VL   LSIGV  + I+  IQK
Sbjct: 128 YWSSLTALTPSSMILEVRIVLITELSIGVVIVAIIVYIQK 167

[Close]
BLAST of Csor.00g241610 vs. ExPASy TrEMBL
Match: A0A5A7VFP9 (Ankyrin repeat-containing protein ITN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00240 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.38e-12
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MA+K P++F  FIVGV+  M++S  QL+ L+NELP N  S SRN +Y +L F ++ +  +
Sbjct: 67  MASKNPSQFLVFIVGVSTAMVLSAAQLMTLMNELPYNKLSDSRNFIYCSLGFIITALGFA 126

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQK 100
           Y S V ALTP  M+  V   L   L++G   + I+  IQK
Sbjct: 127 YGSSVTALTPSSMIDEVKTALLTVLAVGAVVIAIVIYIQK 166

[Close]
BLAST of Csor.00g241610 vs. ExPASy TrEMBL
Match: A0A1S4DVK4 (uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.38e-12
Identity = 43/100 (43.00%), Postives = 62/100 (62.00%), Query Frame = 0 

Query: 1   MATKFPAEFTNFIVGVTVCMIVSMLQLIALLNELPANTPSVSRNSLYFTLVFALSGMLSS 60
           MA+K P++F  FIVGV+  M++S  QL+ L+NELP N  S SRN +Y +L F ++ +  +
Sbjct: 67  MASKNPSQFLVFIVGVSTAMVLSAAQLMTLMNELPYNKLSDSRNFIYCSLGFIITALGFA 126

Query: 61  YVSLVKALTPEPMMPRVAVVLPLTLSIGVASMGILSCIQK 100
           Y S V ALTP  M+  V   L   L++G   + I+  IQK
Sbjct: 127 YGSSVTALTPSSMIDEVKTALLTVLAVGAVVIAIVIYIQK 166

The following BLAST results are available for this feature:
BLAST of Csor.00g241610 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g241610 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6607509.11.62e-62100.00hypothetical protein SDJN03_00851, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607510.16.62e-6299.07hypothetical protein SDJN03_00852, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607511.16.62e-6299.07hypothetical protein SDJN03_00853, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607508.19.40e-6298.13hypothetical protein SDJN03_00850, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6607521.15.70e-4793.62hypothetical protein SDJN03_00863, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g241610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I8P68.58e-3667.57uncharacterized protein LOC111471995 OS=Cucurbita maxima OX=3661 GN=LOC111471995... [more]
A0A6J1GBC15.82e-3365.42uncharacterized protein LOC111452618 OS=Cucurbita moschata OX=3662 GN=LOC1114526... [more]
A0A0A0KFJ59.65e-1447.00PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363010 PE=4 SV... [more]
A0A5A7VFP95.38e-1243.00Ankyrin repeat-containing protein ITN1-like OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DVK45.38e-1243.00uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=... [more]
BLAST of Csor.00g241610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g241610.m01Csor.00g241610.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane