Csor.00g241580 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g241580
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 12650879 .. 12651580 (+)
RNA-Seq Expression	Csor.00g241580
Synteny	Csor.00g241580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGTATTTAAGAGTTTAGACCTTGGTACGTCCAATGTGGACCCCGAGAATGAGGAGCAGCCTGTAGAAGGAACTACTCCAGTAGAGGCAGATCCGAAGCCTACTGCTCCGTCAGCATCGAGAGATCAGTCGACTGTTGTGATTACTTTGGAAGCACTACAATCATTGGTTGAGAGTCGAGTAGATCAGGCGGTGCAGAACCGTGTGGATCAGGTGGCACAGGCAGCTCTTGCTGGTCTTGGAAGCCAGGCGGCTCCGACAACATCTATATCTAGCCAGGCGACTCCAGTCTCTAAAGCACCAGTAGTAATACCTCCAACAAGTTCGACAGAGCTACCTGGTACAGCGGTGGTGACAGAAGCACCACCGCAGGTAGTAACTTATGGGCGACAATGTATGACGGAGGAAAGTGAGTATATACGATATTTTATGAAACTTACCCCGCCAACTTTTGGAGGAAAGGGGACTGATCCTGAGGCGGCAGAATGGTGGTTAGAATGTATTGAAACAAAGTTTACATTCTTTAACTGCCCAGAGAATCATAAGGTGCTATGTGCTACGTATTTGTTGGAAGGACCCGCCCATTTTTTGTGGAAATCAAAGAAGCCAAAGATGAAGGCTGGTGGAGCCCTAATCGCATGGGCGACAATCAAACATGAGTTTTGTGAGAAATACTATCCTGCTCTTGCGAGATTGTGA

mRNA sequence

ATGGTAGTATTTAAGAGTTTAGACCTTGGTACGTCCAATGTGGACCCCGAGAATGAGGAGCAGCCTGTAGAAGGAACTACTCCAGTAGAGGCAGATCCGAAGCCTACTGCTCCGTCAGCATCGAGAGATCAGTCGACTGTTGTGATTACTTTGGAAGCACTACAATCATTGGTTGAGAGTCGAGTAGATCAGGCGGTGCAGAACCGTGTGGATCAGGTGGCACAGGCAGCTCTTGCTGGTCTTGGAAGCCAGGCGGCTCCGACAACATCTATATCTAGCCAGGCGACTCCAGTCTCTAAAGCACCAGTAGTAATACCTCCAACAAGTTCGACAGAGCTACCTGGTACAGCGGTGGTGACAGAAGCACCACCGCAGGTAGTAACTTATGGGCGACAATGTATGACGGAGGAAAGTGAGTATATACGATATTTTATGAAACTTACCCCGCCAACTTTTGGAGGAAAGGGGACTGATCCTGAGGCGGCAGAATGGTGGTTAGAATGTATTGAAACAAAGTTTACATTCTTTAACTGCCCAGAGAATCATAAGGTGCTATGTGCTACGTATTTGTTGGAAGGACCCGCCCATTTTTTGTGGAAATCAAAGAAGCCAAAGATGAAGGCTGGTGGAGCCCTAATCGCATGGGCGACAATCAAACATGAGTTTTGTGAGAAATACTATCCTGCTCTTGCGAGATTGTGA

Coding sequence (CDS)

ATGGTAGTATTTAAGAGTTTAGACCTTGGTACGTCCAATGTGGACCCCGAGAATGAGGAGCAGCCTGTAGAAGGAACTACTCCAGTAGAGGCAGATCCGAAGCCTACTGCTCCGTCAGCATCGAGAGATCAGTCGACTGTTGTGATTACTTTGGAAGCACTACAATCATTGGTTGAGAGTCGAGTAGATCAGGCGGTGCAGAACCGTGTGGATCAGGTGGCACAGGCAGCTCTTGCTGGTCTTGGAAGCCAGGCGGCTCCGACAACATCTATATCTAGCCAGGCGACTCCAGTCTCTAAAGCACCAGTAGTAATACCTCCAACAAGTTCGACAGAGCTACCTGGTACAGCGGTGGTGACAGAAGCACCACCGCAGGTAGTAACTTATGGGCGACAATGTATGACGGAGGAAAGTGAGTATATACGATATTTTATGAAACTTACCCCGCCAACTTTTGGAGGAAAGGGGACTGATCCTGAGGCGGCAGAATGGTGGTTAGAATGTATTGAAACAAAGTTTACATTCTTTAACTGCCCAGAGAATCATAAGGTGCTATGTGCTACGTATTTGTTGGAAGGACCCGCCCATTTTTTGTGGAAATCAAAGAAGCCAAAGATGAAGGCTGGTGGAGCCCTAATCGCATGGGCGACAATCAAACATGAGTTTTGTGAGAAATACTATCCTGCTCTTGCGAGATTGTGA

Protein sequence

MVVFKSLDLGTSNVDPENEEQPVEGTTPVEADPKPTAPSASRDQSTVVITLEALQSLVESRVDQAVQNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAPVVIPPTSSTELPGTAVVTEAPPQVVTYGRQCMTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPENHKVLCATYLLEGPAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL

Homology

[Close]

BLAST of Csor.00g241580 vs. NCBI nr
Match: KAG6601747.1 (hypothetical protein SDJN03_06980, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 461 bits (1186), Expect = 1.32e-163
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MVVFKSLDLGTSNVDPENEEQPVEGTTPVEADPKPTAPSASRDQSTVVITLEALQSLVES 60
           MVVFKSLDLGTSNVDPENEEQPVEGTTPVEADPKPTAPSASRDQSTVVITLEALQSLVES
Sbjct: 1   MVVFKSLDLGTSNVDPENEEQPVEGTTPVEADPKPTAPSASRDQSTVVITLEALQSLVES 60

Query: 61  RVDQAVQNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAPVVIPPTSSTELPGTAVVT 120
           RVDQAVQNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAPVVIPPTSSTELPGTAVVT
Sbjct: 61  RVDQAVQNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAPVVIPPTSSTELPGTAVVT 120

Query: 121 EAPPQVVTYGRQCMTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPE 180
           EAPPQVVTYGRQCMTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPE
Sbjct: 121 EAPPQVVTYGRQCMTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPE 180

Query: 181 NHKVLCATYLLEGPAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
           NHKVLCATYLLEGPAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL
Sbjct: 181 NHKVLCATYLLEGPAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233

[Close]

BLAST of Csor.00g241580 vs. NCBI nr
Match: XP_023521106.1 (uncharacterized protein LOC111784731 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251 bits (641), Expect = 2.29e-81
Identity = 139/176 (78.98%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MVVFKSLDLGTSNVDPENEEQPVEGTTPVEADPKPTAPSASRDQSTVVITLEALQSLVES 60
           MVVFK+LD GTSNVD  NE QPVEGT P EA P+P A SASRDQ TVVITLEALQSL+ES
Sbjct: 1   MVVFKNLDPGTSNVDLGNEGQPVEGTAPAEAIPEPAAQSASRDQPTVVITLEALQSLIES 60

Query: 61  RVDQAVQNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAP-----VVIPPTSSTELPG 120
           +VDQAVQ+RVDQ  QAALAGLGSQAAPT  +S Q T VSKAP      VIPPT  TELPG
Sbjct: 61  QVDQAVQSRVDQAVQAALAGLGSQAAPTAPVSGQTTLVSKAPGVGVQTVIPPTRLTELPG 120

Query: 121 TAVVTEAPPQVVTYGRQCMTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIET 171
           TAVVTEA  +VVTYGR+CMTEESEYIR FMKL PPTFGGKGTDPEAAEWWLECIET
Sbjct: 121 TAVVTEASSRVVTYGRRCMTEESEYIRDFMKLAPPTFGGKGTDPEAAEWWLECIET 176

[Close]

BLAST of Csor.00g241580 vs. NCBI nr
Match: XP_022930572.1 (uncharacterized protein LOC111436980 [Cucurbita moschata])

HSP 1 Score: 236 bits (602), Expect = 7.24e-75
Identity = 121/172 (70.35%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 67  QNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAP-----VVIPPTSSTELPGTAVVTE 126
           Q+RVDQ  QAALAGLGSQAAPT  +  Q T VS+AP      VIPPT  TELP       
Sbjct: 2   QSRVDQAVQAALAGLGSQAAPTAPVLGQTTLVSEAPGVGVQTVIPPTRLTELP------- 61

Query: 127 APPQVVTYGRQCMTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPEN 186
                         EESEYIR FMKL PPTFGGKGTDPEAAEWW+ECIETKFTF+NCPEN
Sbjct: 62  --------------EESEYIRDFMKLAPPTFGGKGTDPEAAEWWMECIETKFTFYNCPEN 121

Query: 187 HKVLCATYLLEGPAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
           HKVLCATYLLEGPAHF WKSKKPKM+AGGA I WA  +HEFCEKYYPALARL
Sbjct: 122 HKVLCATYLLEGPAHFWWKSKKPKMEAGGAPITWAAFRHEFCEKYYPALARL 152

[Close]

BLAST of Csor.00g241580 vs. NCBI nr
Match: XP_022933364.1 (uncharacterized protein LOC111440728, partial [Cucurbita moschata])

HSP 1 Score: 196 bits (498), Expect = 5.97e-58
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 134 MTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPENHKVLCATYLLEG 193
           MTEESEYIR FMKL PPTFGGKGTDPEAAEWWLECIET F F+NCPE+HKVLCATYLLEG
Sbjct: 1   MTEESEYIRDFMKLAPPTFGGKGTDPEAAEWWLECIETNFAFYNCPESHKVLCATYLLEG 60

Query: 194 PAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
           PA+F WKSKKPKM AGGA I WA  +HEFCEKYYPALARL
Sbjct: 61  PANFWWKSKKPKMMAGGAPITWAAFRHEFCEKYYPALARL 100

[Close]

BLAST of Csor.00g241580 vs. NCBI nr
Match: KAG6585968.1 (hypothetical protein SDJN03_18701, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161 bits (407), Expect = 1.07e-45
Identity = 97/132 (73.48%), Postives = 107/132 (81.06%), Query Frame = 0


Query: 1   MVVFKSLDLGTSNVDPENEEQPVEGTTPVEADPKPTAPSASRDQSTVVITLEALQSLVES 60
           MVVFK+LD GTSNV+  NE QPVEGT P EA PKPTA SASRDQ TVVITLEALQSL+ES
Sbjct: 1   MVVFKNLDPGTSNVNLGNEGQPVEGTAPAEAVPKPTAQSASRDQPTVVITLEALQSLIES 60

Query: 61  RVDQAVQNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAP-----VVIPPTSSTELPG 120
           RVDQA+Q+RVDQ  QAALAGLGSQAAPT  +S Q T VS+AP      VIPPT  TELPG
Sbjct: 61  RVDQAMQSRVDQAVQAALAGLGSQAAPTAPVSGQTTLVSEAPGVGVQTVIPPTRLTELPG 120

Query: 121 TAVVTEAPPQVV 127
           TAVVTEAP +++
Sbjct: 121 TAVVTEAPSRML 132

[Close]

BLAST of Csor.00g241580 vs. ExPASy TrEMBL
Match: A0A6J1EQX1 (uncharacterized protein LOC111436980 OS=Cucurbita moschata OX=3662 GN=LOC111436980 PE=4 SV=1)

HSP 1 Score: 236 bits (602), Expect = 3.50e-75
Identity = 121/172 (70.35%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 67  QNRVDQVAQAALAGLGSQAAPTTSISSQATPVSKAP-----VVIPPTSSTELPGTAVVTE 126
           Q+RVDQ  QAALAGLGSQAAPT  +  Q T VS+AP      VIPPT  TELP       
Sbjct: 2   QSRVDQAVQAALAGLGSQAAPTAPVLGQTTLVSEAPGVGVQTVIPPTRLTELP------- 61

Query: 127 APPQVVTYGRQCMTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPEN 186
                         EESEYIR FMKL PPTFGGKGTDPEAAEWW+ECIETKFTF+NCPEN
Sbjct: 62  --------------EESEYIRDFMKLAPPTFGGKGTDPEAAEWWMECIETKFTFYNCPEN 121

Query: 187 HKVLCATYLLEGPAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
           HKVLCATYLLEGPAHF WKSKKPKM+AGGA I WA  +HEFCEKYYPALARL
Sbjct: 122 HKVLCATYLLEGPAHFWWKSKKPKMEAGGAPITWAAFRHEFCEKYYPALARL 152

[Close]

BLAST of Csor.00g241580 vs. ExPASy TrEMBL
Match: A0A6J1EZK0 (uncharacterized protein LOC111440728 OS=Cucurbita moschata OX=3662 GN=LOC111440728 PE=4 SV=1)

HSP 1 Score: 196 bits (498), Expect = 2.89e-58
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 134 MTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPENHKVLCATYLLEG 193
           MTEESEYIR FMKL PPTFGGKGTDPEAAEWWLECIET F F+NCPE+HKVLCATYLLEG
Sbjct: 1   MTEESEYIRDFMKLAPPTFGGKGTDPEAAEWWLECIETNFAFYNCPESHKVLCATYLLEG 60

Query: 194 PAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
           PA+F WKSKKPKM AGGA I WA  +HEFCEKYYPALARL
Sbjct: 61  PANFWWKSKKPKMMAGGAPITWAAFRHEFCEKYYPALARL 100

[Close]

BLAST of Csor.00g241580 vs. ExPASy TrEMBL
Match: A0A6J1HE31 (uncharacterized protein LOC111462031 OS=Cucurbita moschata OX=3662 GN=LOC111462031 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 6.85e-24
Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 134 MTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPENHKVLCATYLLEG 193
           MT ES Y+R F +  PP+F G   DP AAE WLE IET F F NCP  ++V C TY+L+G
Sbjct: 144 MTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKG 203

Query: 194 PAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
            AHF WK  +  +   G  I W   K  +  KYYP  AR+
Sbjct: 204 EAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARV 243

[Close]

BLAST of Csor.00g241580 vs. ExPASy TrEMBL
Match: A0A6J1EMX1 (uncharacterized protein LOC111434030 OS=Cucurbita moschata OX=3662 GN=LOC111434030 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 6.00e-23
Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 134 MTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPENHKVLCATYLLEG 193
           MT ES Y+R F +  PP+F G   DP AAE WLE IET F F NCP  ++V C TY+L+G
Sbjct: 82  MTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKG 141

Query: 194 PAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
            AHF WK  +  +   G  I W   K  +  KYYP  AR+
Sbjct: 142 EAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARV 181

[Close]

BLAST of Csor.00g241580 vs. ExPASy TrEMBL
Match: A0A6J1EZM7 (uncharacterized protein LOC111438026 OS=Cucurbita moschata OX=3662 GN=LOC111438026 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 6.51e-23
Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 134 MTEESEYIRYFMKLTPPTFGGKGTDPEAAEWWLECIETKFTFFNCPENHKVLCATYLLEG 193
           MT ES Y+R F +  PP+F G   DP AAE WLE IET F F NCP  ++V C TY+L+G
Sbjct: 144 MTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKG 203

Query: 194 PAHFLWKSKKPKMKAGGALIAWATIKHEFCEKYYPALARL 233
            AHF WK  +  +   G  I W   K  +  KYYP  AR+
Sbjct: 204 EAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARV 243

The following BLAST results are available for this feature:

BLAST of Csor.00g241580 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g241580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601747.1	1.32e-163	100.00	hypothetical protein SDJN03_06980, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023521106.1	2.29e-81	78.98	uncharacterized protein LOC111784731 [Cucurbita pepo subsp. pepo]	[more]
XP_022930572.1	7.24e-75	70.35	uncharacterized protein LOC111436980 [Cucurbita moschata]	[more]
XP_022933364.1	5.97e-58	86.00	uncharacterized protein LOC111440728, partial [Cucurbita moschata]	[more]
KAG6585968.1	1.07e-45	73.48	hypothetical protein SDJN03_18701, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g241580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQX1	3.50e-75	70.35	uncharacterized protein LOC111436980 OS=Cucurbita moschata OX=3662 GN=LOC1114369...	[more]
A0A6J1EZK0	2.89e-58	86.00	uncharacterized protein LOC111440728 OS=Cucurbita moschata OX=3662 GN=LOC1114407...	[more]
A0A6J1HE31	6.85e-24	48.00	uncharacterized protein LOC111462031 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1EMX1	6.00e-23	48.00	uncharacterized protein LOC111434030 OS=Cucurbita moschata OX=3662 GN=LOC1114340...	[more]
A0A6J1EZM7	6.51e-23	48.00	uncharacterized protein LOC111438026 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]

BLAST of Csor.00g241580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g241580.m01	Csor.00g241580.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding