Csor.00g241520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g241520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein OBERON 4-like
Location	Csor_Chr04: 12838842 .. 12839177 (+)
RNA-Seq Expression	Csor.00g241520
Synteny	Csor.00g241520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGGCTAAAGAGAGAGAAGCTTGCAGGGATGATGCTGGTTTATCAGAAAGTCGGGATGTATCGATTGATTTGGGGAATTGTACTAAGGATGAACGTGATGTTGTGGCTAACGAAGGTGACAAATTGGAAGACCGTTTGGTTGGTGAAAGAGAACAAGGTAATGGGATGGATGACAAGAACTCGTTAGAATCCTTAGTTCAATTGGATGACGAGTGCAAGGAAAGCAAGGGCCTCGATCAAGAAGTGAAGACCAGAAATTTTGATGTATCAGATAAAGAGGTAGAAAAAGAAATGTCAAATGGAGGACAACAAAAACTACCAAGGCATTGA

mRNA sequence

ATGGATGTGGCTAAAGAGAGAGAAGCTTGCAGGGATGATGCTGGTTTATCAGAAAGTCGGGATGTATCGATTGATTTGGGGAATTGTACTAAGGATGAACGTGATGTTGTGGCTAACGAAGGTGACAAATTGGAAGACCGTTTGGTTGGTGAAAGAGAACAAGGTAATGGGATGGATGACAAGAACTCGTTAGAATCCTTAGTTCAATTGGATGACGAGTGCAAGGAAAGCAAGGGCCTCGATCAAGAAGTGAAGACCAGAAATTTTGATGTATCAGATAAAGAGGTAGAAAAAGAAATGTCAAATGGAGGACAACAAAAACTACCAAGGCATTGA

Coding sequence (CDS)

ATGGATGTGGCTAAAGAGAGAGAAGCTTGCAGGGATGATGCTGGTTTATCAGAAAGTCGGGATGTATCGATTGATTTGGGGAATTGTACTAAGGATGAACGTGATGTTGTGGCTAACGAAGGTGACAAATTGGAAGACCGTTTGGTTGGTGAAAGAGAACAAGGTAATGGGATGGATGACAAGAACTCGTTAGAATCCTTAGTTCAATTGGATGACGAGTGCAAGGAAAGCAAGGGCCTCGATCAAGAAGTGAAGACCAGAAATTTTGATGTATCAGATAAAGAGGTAGAAAAAGAAATGTCAAATGGAGGACAACAAAAACTACCAAGGCATTGA

Protein sequence

MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDDKNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNGGQQKLPRH

Homology

[Close]

BLAST of Csor.00g241520 vs. NCBI nr
Match: KAG6601753.1 (hypothetical protein SDJN03_06986, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217 bits (553), Expect = 4.39e-71
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD
Sbjct: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNGGQQKLPRH 111
           KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNGGQQKLPRH
Sbjct: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNGGQQKLPRH 111

[Close]

BLAST of Csor.00g241520 vs. NCBI nr
Match: XP_022952910.1 (uncharacterized protein LOC111455451 [Cucurbita moschata])

HSP 1 Score: 184 bits (468), Expect = 1.59e-56
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           MDVAKEREAC DDAGLSESRDVSIDLGNCTKDERDV+A+EGDKLED LV EREQGNGMDD
Sbjct: 78  MDVAKEREACSDDAGLSESRDVSIDLGNCTKDERDVMADEGDKLEDSLVDEREQGNGMDD 137

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNGGQQKLPR 110
           KNSLES VQLDDECKESKGLDQEVKTRNFDVSDKEVEKEM +G + K  +
Sbjct: 138 KNSLESSVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMPDGERTKTTK 187

[Close]

BLAST of Csor.00g241520 vs. NCBI nr
Match: XP_022961438.1 (uncharacterized protein LOC111462020 [Cucurbita moschata])

HSP 1 Score: 172 bits (437), Expect = 1.55e-49
Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           M+VAKEREAC DD GLSES+DVSIDL NCTKDERDVVA+EGDKLED LVGEREQGNGMDD
Sbjct: 300 MNVAKEREACSDDGGLSESQDVSIDLENCTKDERDVVADEGDKLEDSLVGEREQGNGMDD 359

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNG 103
           KNSL+S VQLDD+CK+SKG+DQEVKT+NFDVS KEVEKEMS+G
Sbjct: 360 KNSLKSSVQLDDKCKKSKGIDQEVKTKNFDVSHKEVEKEMSDG 402

[Close]

BLAST of Csor.00g241520 vs. NCBI nr
Match: KAG6590509.1 (hypothetical protein SDJN03_15932, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167 bits (422), Expect = 1.22e-48
Identity = 85/103 (82.52%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           M+VAKEREAC DDAGLS+S+DVSIDL NCTKDERDVVA++GDKLED LVGEREQ NGMDD
Sbjct: 179 MNVAKEREACSDDAGLSKSQDVSIDLENCTKDERDVVADKGDKLEDSLVGEREQRNGMDD 238

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNG 103
           KNSL+S VQLDD+CK+SKG+DQEVKT+NFDVS K+VEKEMS+G
Sbjct: 239 KNSLKSSVQLDDKCKKSKGIDQEVKTKNFDVSHKDVEKEMSDG 281

[Close]

BLAST of Csor.00g241520 vs. NCBI nr
Match: KAG7025641.1 (Protein OBERON 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176 bits (445), Expect = 2.54e-48
Identity = 91/103 (88.35%), Postives = 96/103 (93.20%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           MDVAKEREAC DDAGLSESRDVSIDLGNC K+ERDVVA+EG+KLED  VGEREQGNG DD
Sbjct: 340 MDVAKEREACSDDAGLSESRDVSIDLGNCIKEERDVVADEGNKLEDSSVGEREQGNGTDD 399

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNG 103
           KNSLES VQLDDECKESKG+DQEVKTR+FDVSDKEVEKEMS G
Sbjct: 400 KNSLESSVQLDDECKESKGIDQEVKTRDFDVSDKEVEKEMSYG 442

[Close]

BLAST of Csor.00g241520 vs. ExPASy TrEMBL
Match: A0A6J1GN43 (uncharacterized protein LOC111455451 OS=Cucurbita moschata OX=3662 GN=LOC111455451 PE=4 SV=1)

HSP 1 Score: 184 bits (468), Expect = 7.71e-57
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           MDVAKEREAC DDAGLSESRDVSIDLGNCTKDERDV+A+EGDKLED LV EREQGNGMDD
Sbjct: 78  MDVAKEREACSDDAGLSESRDVSIDLGNCTKDERDVMADEGDKLEDSLVDEREQGNGMDD 137

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNGGQQKLPR 110
           KNSLES VQLDDECKESKGLDQEVKTRNFDVSDKEVEKEM +G + K  +
Sbjct: 138 KNSLESSVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMPDGERTKTTK 187

[Close]

BLAST of Csor.00g241520 vs. ExPASy TrEMBL
Match: A0A6J1HBU0 (uncharacterized protein LOC111462020 OS=Cucurbita moschata OX=3662 GN=LOC111462020 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 7.51e-50
Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           M+VAKEREAC DD GLSES+DVSIDL NCTKDERDVVA+EGDKLED LVGEREQGNGMDD
Sbjct: 300 MNVAKEREACSDDGGLSESQDVSIDLENCTKDERDVVADEGDKLEDSLVGEREQGNGMDD 359

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNG 103
           KNSL+S VQLDD+CK+SKG+DQEVKT+NFDVS KEVEKEMS+G
Sbjct: 360 KNSLKSSVQLDDKCKKSKGIDQEVKTKNFDVSHKEVEKEMSDG 402

[Close]

BLAST of Csor.00g241520 vs. ExPASy TrEMBL
Match: A0A6J1H741 (protein OBERON 4-like OS=Cucurbita moschata OX=3662 GN=LOC111460788 PE=4 SV=1)

HSP 1 Score: 175 bits (443), Expect = 2.28e-48
Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           MDVAKEREAC DDAGLSESRDVSIDLGNC K+ERDVVA+EG+KLED  VGEREQGNG DD
Sbjct: 340 MDVAKEREACSDDAGLSESRDVSIDLGNCIKEERDVVADEGNKLEDSSVGEREQGNGTDD 399

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNG 103
           KNSLES VQLDDECKESKG+DQEVKTR+FDVS+KEVEKEMS+G
Sbjct: 400 KNSLESSVQLDDECKESKGIDQEVKTRDFDVSNKEVEKEMSDG 442

[Close]

BLAST of Csor.00g241520 vs. ExPASy TrEMBL
Match: A0A6J1KQE8 (protein OBERON 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497746 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 2.10e-45
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           MDVAKE+EAC DDAGLSESRDVSIDLGNC K+ERDVVA+EG+KLED  VGEREQ NG DD
Sbjct: 340 MDVAKEKEACSDDAGLSESRDVSIDLGNCIKEERDVVADEGNKLEDSSVGEREQDNGTDD 399

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNG 103
           KNSLES VQLD+ECKESKG+DQEV TR+F VSDKEVEKEMS+G
Sbjct: 400 KNSLESSVQLDNECKESKGIDQEVNTRDFHVSDKEVEKEMSDG 442

[Close]

BLAST of Csor.00g241520 vs. ExPASy TrEMBL
Match: A0A6J1JXG0 (protein OBERON 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488371 PE=4 SV=1)

HSP 1 Score: 131 bits (329), Expect = 5.32e-33
Identity = 67/103 (65.05%), Postives = 86/103 (83.50%), Query Frame = 0


Query: 1   MDVAKEREACRDDAGLSESRDVSIDLGNCTKDERDVVANEGDKLEDRLVGEREQGNGMDD 60
           MDV KE EAC D+AGLSESR+VS +L +CTKDE DV+A+EGDK+E+ LV ERE+ NG D+
Sbjct: 339 MDVTKENEACSDEAGLSESRNVSNNLRSCTKDELDVMADEGDKVEESLVDERERRNGADE 398

Query: 61  KNSLESLVQLDDECKESKGLDQEVKTRNFDVSDKEVEKEMSNG 103
           K+SLE+ V LD++CKESKG+D E+KTR+FD +DK VE E S+G
Sbjct: 399 KDSLETSVHLDEKCKESKGIDLEIKTRDFDDADKVVENESSDG 441

The following BLAST results are available for this feature:

BLAST of Csor.00g241520 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g241520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601753.1	4.39e-71	100.00	hypothetical protein SDJN03_06986, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022952910.1	1.59e-56	87.27	uncharacterized protein LOC111455451 [Cucurbita moschata]	[more]
XP_022961438.1	1.55e-49	85.44	uncharacterized protein LOC111462020 [Cucurbita moschata]	[more]
KAG6590509.1	1.22e-48	82.52	hypothetical protein SDJN03_15932, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7025641.1	2.54e-48	88.35	Protein OBERON 4, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Csor.00g241520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GN43	7.71e-57	87.27	uncharacterized protein LOC111455451 OS=Cucurbita moschata OX=3662 GN=LOC1114554...	[more]
A0A6J1HBU0	7.51e-50	85.44	uncharacterized protein LOC111462020 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1H741	2.28e-48	87.38	protein OBERON 4-like OS=Cucurbita moschata OX=3662 GN=LOC111460788 PE=4 SV=1	[more]
A0A6J1KQE8	2.10e-45	83.50	protein OBERON 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497746 PE=4 SV=1	[more]
A0A6J1JXG0	5.32e-33	65.05	protein OBERON 4-like OS=Cucurbita maxima OX=3661 GN=LOC111488371 PE=4 SV=1	[more]

BLAST of Csor.00g241520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g241520.m01	Csor.00g241520.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus