Csor.00g241460 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g241460
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionCLAVATA3/ESR (CLE)-related protein 12-like
LocationCsor_Chr04: 13148955 .. 13149272 (-)
RNA-Seq ExpressionCsor.00g241460
SyntenyCsor.00g241460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGGATCTCTCTTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGAACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

mRNA sequence

ATGCTTTGGATCTCTCTTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGAACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

Coding sequence (CDS)

ATGCTTTGGATCTCTCTTCTTCTCATATTACTTCATCAACTAAACATCTTCAACGCCAAAATGAATTGCAAATCAATACCAAACATCACATTTTCCTATTCTTCCTCTTCTAACCATCCCTTGACTACAAGGAAAGAACTGGCTAGCAAGGTTGACTTCACTCCCTTTTTTCCCCACCCGCAGCCAAATCGACCCAGAAAGCATTCACGACCCGCTGTCAAACTCGAACCGCCCGACTCTGCTGCAGACGACGTTGATCCGCTCTACGGGGTTGAGAAGCGGCGTGTTCCTAATGGTCCAAACCCATTGCACAATTGA

Protein sequence

MLWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN
Homology
BLAST of Csor.00g241460 vs. ExPASy Swiss-Prot
Match: Q29PU4 (CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.5e-09
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 1   MLWISLLLILLHQLNIFNAK----MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPF 60
           +LW+SL  +LLH L   N +    +N      +   Y S   + L +RK L+ + DFTPF
Sbjct: 21  VLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRS---YRLVSRKVLSDRFDFTPF 80

Query: 61  FPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 106
             H + N    H R   + +      D++DP YGVEKRRVP+GPNPLH+
Sbjct: 81  --HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRVPSGPNPLHH 118

BLAST of Csor.00g241460 vs. ExPASy Swiss-Prot
Match: Q6NMF0 (CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.5e-04
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 1   MLWISLLLILLHQL--NIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKV-DFTPFF 60
           +LWISLL+ +   L  N  +  +N    P IT      + +    R+ LA K  DFTPF 
Sbjct: 13  LLWISLLIFVSIGLFGNFSSKPINPFPSPVITL----PALYYRPGRRALAVKTFDFTPFL 72

Query: 61  PHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 106
              + +  RK + PA           ++DP YGVEKR VP+GPNPLH+
Sbjct: 73  KDLRRSNHRK-ALPA--------GGSEIDPRYGVEKRLVPSGPNPLHH 107

BLAST of Csor.00g241460 vs. ExPASy Swiss-Prot
Match: Q9FZE4 (CLAVATA3/ESR (CLE)-related protein 9 OS=Arabidopsis thaliana OX=3702 GN=CLE9 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 1.0e-03
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 0

Query: 64  RPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 106
           R  + SR    L PP     ++DP YGV+KR VP+GPNPLHN
Sbjct: 82  RIHRSSRKQPLLSPP---PPEIDPRYGVDKRLVPSGPNPLHN 120

BLAST of Csor.00g241460 vs. NCBI nr
Match: KAG6601759.1 (CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217 bits (552), Expect = 4.01e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MLWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHP 60
           MLWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHP
Sbjct: 1   MLWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHP 60

Query: 61  QPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 105
           QPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN
Sbjct: 61  QPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 105

BLAST of Csor.00g241460 vs. NCBI nr
Match: KAG7032483.1 (CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182 bits (462), Expect = 1.16e-57
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 21  MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDS 80
           MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDS
Sbjct: 1   MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQPNRPRKHSRPAVKLEPPDS 60

Query: 81  AADDVDPLYGVEKRRVPNGPNPLHN 105
           AADDVDPLYGVEKRRVPNGPNPLHN
Sbjct: 61  AADDVDPLYGVEKRRVPNGPNPLHN 85

BLAST of Csor.00g241460 vs. NCBI nr
Match: XP_023903065.1 (CLAVATA3/ESR (CLE)-related protein 12 [Quercus suber])

HSP 1 Score: 96.3 bits (238), Expect = 4.13e-23
Identity = 55/108 (50.93%), Postives = 72/108 (66.67%), Query Frame = 0

Query: 2   LWISLLLILLHQLNIFNAK-MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHP 61
           LW+SLL++L HQL  F +K +N K I  IT+S +  SNHPL TRK LAS+ DFTPF  H 
Sbjct: 13  LWLSLLVLLFHQLFDFKSKNINTKQITTITYS-TVLSNHPLITRKVLASRFDFTPFVKHH 72

Query: 62  QPNRPRK--HSRPAVKLE-PPDSAADDVDPLYGVEKRRVPNGPNPLHN 105
           Q  + ++  H + +  +   PD    ++DP YGVEKRRVP GPNPLH+
Sbjct: 73  QQQQQQQQDHMKRSQNMHVKPDPDGSEIDPRYGVEKRRVPTGPNPLHH 119

BLAST of Csor.00g241460 vs. NCBI nr
Match: KAF3958485.1 (hypothetical protein CMV_016625 [Castanea mollissima])

HSP 1 Score: 94.4 bits (233), Expect = 2.64e-22
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = 0

Query: 2   LWISLLLILLHQLNIFNAK-MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPH- 61
           LW+SLL++L HQL  F +K +N K I  IT+S +  SNHPL TRK LAS+ DFTPF  H 
Sbjct: 13  LWLSLLVLLFHQLFDFKSKNINTKQITTITYS-TVLSNHPLITRKVLASRFDFTPFVKHH 72

Query: 62  -----PQPNRPRKHSRPAVKLE-PPDSAADDVDPLYGVEKRRVPNGPNPLHN 105
                 Q  + + H + +  +   PD    ++DP YGVEKRRVP GPNPLH+
Sbjct: 73  QQLQQQQQQQQQDHMKRSQNMHVKPDPDGSEIDPRYGVEKRRVPTGPNPLHH 123

BLAST of Csor.00g241460 vs. NCBI nr
Match: XP_021300415.1 (CLAVATA3/ESR (CLE)-related protein 12-like [Herrania umbratica])

HSP 1 Score: 94.0 bits (232), Expect = 2.84e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 2   LWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQ 61
           LW+SLL +LLH+ + F  K+N +   +ITFS  S S +PL +RK +ASK DFTPF  H Q
Sbjct: 14  LWLSLLFLLLHEFHSFKFKINGRQASSITFS--SLSRNPLISRKVVASKFDFTPFQKHHQ 73

Query: 62  PNRPRKHSRPAVKLEPPDSAAD-DVDPLYGVEKRRVPNGPNPLHN 105
             +  KHS P +K +    AAD ++DP YGVEKR VP GPNPLH+
Sbjct: 74  QEQQDKHS-PDMKRQ--SQAADTEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of Csor.00g241460 vs. ExPASy TrEMBL
Match: A0A0A0KPQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577440 PE=3 SV=1)

HSP 1 Score: 144 bits (363), Expect = 1.87e-42
Identity = 74/106 (69.81%), Postives = 81/106 (76.42%), Query Frame = 0

Query: 1   MLWISLLLILLHQLNIFNAKMNCKSIPNITFSY-SSSSNHPLTTRKELASKVDFTPFFPH 60
           MLWISLLL+LLH+LNIF AKMN +  P ITFSY SSSSNHPL TRK L SKVDFTPFF H
Sbjct: 12  MLWISLLLLLLHELNIFKAKMNHRPTPTITFSYYSSSSNHPLITRKVLTSKVDFTPFFRH 71

Query: 61  PQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 105
             PN+PRKHS P       + A  D+DP YGVEKRRVP GPNPLH+
Sbjct: 72  RHPNQPRKHSHPTDTNVVDEPAPSDIDPRYGVEKRRVPTGPNPLHH 117

BLAST of Csor.00g241460 vs. ExPASy TrEMBL
Match: A0A7N2KK79 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.68e-24
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = 0

Query: 2   LWISLLLILLHQLNIFNAK-MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHP 61
           LW+SLL++L HQL    +K +N K I  IT+S +  SNHPL TRK LAS+ DFTPF  H 
Sbjct: 13  LWLSLLVLLFHQLFDLKSKNINTKQITTITYS-TVLSNHPLITRKVLASRFDFTPFVKHH 72

Query: 62  QPNRPRKHSRPAVKLE-PPDSAADDVDPLYGVEKRRVPNGPNPLHN 105
           Q  + + H + +  +   PD    ++DP YGVEKRRVP GPNPLH+
Sbjct: 73  QQQQQQDHMKLSQNMHVKPDPDGSEIDPRYGVEKRRVPTGPNPLHH 117

BLAST of Csor.00g241460 vs. ExPASy TrEMBL
Match: A0A2N9J7P0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60537 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.40e-23
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 2   LWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQ 61
           LW+SL++ L HQ     +K+N K I  +T+S  S  +HPL TRK LASK DFTPF  H Q
Sbjct: 11  LWLSLMVFLFHQ----KSKINNKQISTMTYSSLSIHHHPLITRKVLASKFDFTPFVKHHQ 70

Query: 62  PNRPRK--HSRPAVKLE-PPDSAADDVDPLYGVEKRRVPNGPNPLHN 105
             + ++  HS+ +  +   P+ A  ++DP YGVEKRRVP GPNPLH+
Sbjct: 71  QRQQQQQDHSKRSQNMHVQPEPAESEIDPRYGVEKRRVPTGPNPLHH 113

BLAST of Csor.00g241460 vs. ExPASy TrEMBL
Match: A0A6J1BM88 (CLAVATA3/ESR (CLE)-related protein 12-like OS=Herrania umbratica OX=108875 GN=LOC110428821 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.38e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 2   LWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQ 61
           LW+SLL +LLH+ + F  K+N +   +ITFS  S S +PL +RK +ASK DFTPF  H Q
Sbjct: 14  LWLSLLFLLLHEFHSFKFKINGRQASSITFS--SLSRNPLISRKVVASKFDFTPFQKHHQ 73

Query: 62  PNRPRKHSRPAVKLEPPDSAAD-DVDPLYGVEKRRVPNGPNPLHN 105
             +  KHS P +K +    AAD ++DP YGVEKR VP GPNPLH+
Sbjct: 74  QEQQDKHS-PDMKRQ--SQAADTEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of Csor.00g241460 vs. ExPASy TrEMBL
Match: A0A061EC34 (Clavata3/esr-related 12, putative OS=Theobroma cacao OX=3641 GN=TCM_011877 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 5.56e-22
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 0

Query: 2   LWISLLLILLHQLNIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPFFPHPQ 61
           LW+SLL +LLH+ + F  K+N +   +ITFS  S S +PL +RK +A K DFTPF  H Q
Sbjct: 14  LWLSLLFLLLHEFHSFKFKINGRQASSITFS--SLSRNPLISRKVVAGKFDFTPFQKHHQ 73

Query: 62  PNRPRKHSRPAVKLEPPDSAAD-DVDPLYGVEKRRVPNGPNPLHN 105
             +  KHS P +K +    AAD ++DP YGVEKR VP GPNPLH+
Sbjct: 74  QEQQDKHS-PDMKRQ--SQAADTEIDPRYGVEKRLVPTGPNPLHH 113

BLAST of Csor.00g241460 vs. TAIR 10
Match: AT1G68795.1 (CLAVATA3/ESR-RELATED 12 )

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-10
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 0

Query: 1   MLWISLLLILLHQLNIFNAK----MNCKSIPNITFSYSSSSNHPLTTRKELASKVDFTPF 60
           +LW+SL  +LLH L   N +    +N      +   Y S   + L +RK L+ + DFTPF
Sbjct: 21  VLWLSLFFLLLHHLYSLNFRRLYSLNAVEPSLLKQHYRS---YRLVSRKVLSDRFDFTPF 80

Query: 61  FPHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 106
             H + N    H R   + +      D++DP YGVEKRRVP+GPNPLH+
Sbjct: 81  --HSRDNSRHNH-RSGEQYD-----GDEIDPRYGVEKRRVPSGPNPLHH 118

BLAST of Csor.00g241460 vs. TAIR 10
Match: AT1G73965.1 (CLAVATA3/ESR-RELATED 13 )

HSP 1 Score: 45.4 bits (106), Expect = 3.2e-05
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 1   MLWISLLLILLHQL--NIFNAKMNCKSIPNITFSYSSSSNHPLTTRKELASKV-DFTPFF 60
           +LWISLL+ +   L  N  +  +N    P IT      + +    R+ LA K  DFTPF 
Sbjct: 13  LLWISLLIFVSIGLFGNFSSKPINPFPSPVITL----PALYYRPGRRALAVKTFDFTPFL 72

Query: 61  PHPQPNRPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 106
              + +  RK + PA           ++DP YGVEKR VP+GPNPLH+
Sbjct: 73  KDLRRSNHRK-ALPA--------GGSEIDPRYGVEKRLVPSGPNPLHH 107

BLAST of Csor.00g241460 vs. TAIR 10
Match: AT1G26600.1 (CLAVATA3/ESR-RELATED 9 )

HSP 1 Score: 44.3 bits (103), Expect = 7.1e-05
Identity = 22/42 (52.38%), Postives = 27/42 (64.29%), Query Frame = 0

Query: 64  RPRKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 106
           R  + SR    L PP     ++DP YGV+KR VP+GPNPLHN
Sbjct: 82  RIHRSSRKQPLLSPP---PPEIDPRYGVDKRLVPSGPNPLHN 120

BLAST of Csor.00g241460 vs. TAIR 10
Match: AT1G69320.1 (CLAVATA3/ESR-RELATED 10 )

HSP 1 Score: 41.6 bits (96), Expect = 4.6e-04
Identity = 20/40 (50.00%), Postives = 23/40 (57.50%), Query Frame = 0

Query: 66  RKHSRPAVKLEPPDSAADDVDPLYGVEKRRVPNGPNPLHN 106
           R H      L  P     ++D  YGVEKR VP+GPNPLHN
Sbjct: 68  RIHRSSRQPLFSPPPPPTEIDQRYGVEKRLVPSGPNPLHN 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q29PU43.5e-0939.45CLAVATA3/ESR (CLE)-related protein 12 OS=Arabidopsis thaliana OX=3702 GN=CLE12 P... [more]
Q6NMF04.5e-0437.96CLAVATA3/ESR (CLE)-related protein 13 OS=Arabidopsis thaliana OX=3702 GN=CLE13 P... [more]
Q9FZE41.0e-0352.38CLAVATA3/ESR (CLE)-related protein 9 OS=Arabidopsis thaliana OX=3702 GN=CLE9 PE=... [more]
Match NameE-valueIdentityDescription
KAG6601759.14.01e-71100.00CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. so... [more]
KAG7032483.11.16e-57100.00CLAVATA3/ESR (CLE)-related protein 12, partial [Cucurbita argyrosperma subsp. ar... [more]
XP_023903065.14.13e-2350.93CLAVATA3/ESR (CLE)-related protein 12 [Quercus suber][more]
KAF3958485.12.64e-2249.11hypothetical protein CMV_016625 [Castanea mollissima][more]
XP_021300415.12.84e-2252.38CLAVATA3/ESR (CLE)-related protein 12-like [Herrania umbratica][more]
Match NameE-valueIdentityDescription
A0A0A0KPQ31.87e-4269.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577440 PE=3 SV=1[more]
A0A7N2KK794.68e-2450.94Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1[more]
A0A2N9J7P02.40e-2348.60Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60537 PE=3 SV=1[more]
A0A6J1BM881.38e-2252.38CLAVATA3/ESR (CLE)-related protein 12-like OS=Herrania umbratica OX=108875 GN=LO... [more]
A0A061EC345.56e-2251.43Clavata3/esr-related 12, putative OS=Theobroma cacao OX=3641 GN=TCM_011877 PE=3 ... [more]
Match NameE-valueIdentityDescription
AT1G68795.12.5e-1039.45CLAVATA3/ESR-RELATED 12 [more]
AT1G73965.13.2e-0537.96CLAVATA3/ESR-RELATED 13 [more]
AT1G26600.17.1e-0552.38CLAVATA3/ESR-RELATED 9 [more]
AT1G69320.14.6e-0450.00CLAVATA3/ESR-RELATED 10 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..105
NoneNo IPR availablePANTHERPTHR34359:SF20CLAVATA3/ESR (CLE)-RELATED PROTEIN 13coord: 1..104
IPR039618CLAVATA3/ESR (CLE)-related protein 9/10/11/12/13PANTHERPTHR34359CLAVATA3/ESR (CLE)-RELATED PROTEIN 10coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g241460.m01Csor.00g241460.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity