Csor.00g241450 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g241450
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	PARP catalytic domain-containing protein
Location	Csor_Chr04: 13193442 .. 13193684 (+)
RNA-Seq Expression	Csor.00g241450
Synteny	Csor.00g241450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCCGCTCTCTCCAACACCTCCATCTCCTTCCTCCTCCTCCTCATTCTTCTCCCGCCCTTCACCTCTGCAAGGCCACCTCCGGCAACAATGCCCACCCACAATTTCTTACCCACACCAAACGCCGCCATCCAATTCCAACGTCAATTCTTCAGCTTCCTTCCCAGAGGGGTTCCCATTCCGCCCTCCGCGCCTTCCAAGAGACACAACTCCGTCCTTCACTCCGCCCACCGCGACTGA

mRNA sequence

ATGGCGCCCGCTCTCTCCAACACCTCCATCTCCTTCCTCCTCCTCCTCATTCTTCTCCCGCCCTTCACCTCTGCAAGGCCACCTCCGGCAACAATGCCCACCCACAATTTCTTACCCACACCAAACGCCGCCATCCAATTCCAACGTCAATTCTTCAGCTTCCTTCCCAGAGGGGTTCCCATTCCGCCCTCCGCGCCTTCCAAGAGACACAACTCCGTCCTTCACTCCGCCCACCGCGACTGA

Coding sequence (CDS)

ATGGCGCCCGCTCTCTCCAACACCTCCATCTCCTTCCTCCTCCTCCTCATTCTTCTCCCGCCCTTCACCTCTGCAAGGCCACCTCCGGCAACAATGCCCACCCACAATTTCTTACCCACACCAAACGCCGCCATCCAATTCCAACGTCAATTCTTCAGCTTCCTTCCCAGAGGGGTTCCCATTCCGCCCTCCGCGCCTTCCAAGAGACACAACTCCGTCCTTCACTCCGCCCACCGCGACTGA

Protein sequence

MAPALSNTSISFLLLLILLPPFTSARPPPATMPTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPSAPSKRHNSVLHSAHRD

Homology

[Close]

BLAST of Csor.00g241450 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-04
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 52 FSFLPRGVPIPPSAPSKRHNSVLHS 77
          F +LP+GVPIPPSAPSKRHNS ++S
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNS 74

[Close]

BLAST of Csor.00g241450 vs. NCBI nr
Match: KAG6601760.1 (hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (404), Expect = 2.51e-49
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAPALSNTSISFLLLLILLPPFTSARPPPATMPTHNFLPTPNAAIQFQRQFFSFLPRGVP 60
          MAPALSNTSISFLLLLILLPPFTSARPPPATMPTHNFLPTPNAAIQFQRQFFSFLPRGVP
Sbjct: 1  MAPALSNTSISFLLLLILLPPFTSARPPPATMPTHNFLPTPNAAIQFQRQFFSFLPRGVP 60

Query: 61 IPPSAPSKRHNSVLHSAHRD 80
          IPPSAPSKRHNSVLHSAHRD
Sbjct: 61 IPPSAPSKRHNSVLHSAHRD 80

[Close]

BLAST of Csor.00g241450 vs. NCBI nr
Match: KAG6579701.1 (hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 1.14e-19
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 6   SNTSISFLLLLILLPPFTSARPPPATMPTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPSA 65
           SN S+ F  LL LL  F+SARP PATM   +F P PN A +F  Q FSFLP+G PIPPSA
Sbjct: 52  SNASLLFFFLLTLLLGFSSARPAPATMAGTSFFPAPNTAFRFHHQVFSFLPKGTPIPPSA 111

Query: 66  PSKRHNSVL 74
           PSKRHNSV+
Sbjct: 112 PSKRHNSVV 120

[Close]

BLAST of Csor.00g241450 vs. NCBI nr
Match: KGN51548.1 (hypothetical protein Csa_008377 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 7.89e-14
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 5  LSNTSISFLLLLIL-LPPFTSARPPPATMPT----HNFLPTPNAAIQFQRQFFSFLPRGV 64
          ++++SI F+LLLIL LP FT+ARP PAT  T    HN   T   A +F  Q FSFLP+G 
Sbjct: 1  MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLT--TAFRFNHQIFSFLPKG- 60

Query: 65 PIPPSAPSKRHNSVLHSA 77
          PIPPSAPSKRHNS+++SA
Sbjct: 61 PIPPSAPSKRHNSLINSA 75

[Close]

BLAST of Csor.00g241450 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.61e-08
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 12 FLLLLILLPPFTSARPPPATM--PTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPSAPSKR 71
          F+LLL+LL  F+SA  P  TM  P  +       A ++  Q F FLP+GVPIPPS PS R
Sbjct: 28 FILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDR 87

Query: 72 HNSVLHS 76
          HNSV+ S
Sbjct: 88 HNSVVDS 94

[Close]

BLAST of Csor.00g241450 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.87e-08
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 12 FLLLLILLPPFTSARPPPATM--PTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPSAPSKR 71
          F+LLL+LL  F+SA  P  TM  P  +       A ++  Q F FLP+GVPIPPS PS R
Sbjct: 32 FILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDR 91

Query: 72 HNSVLHS 76
          HNSV+ S
Sbjct: 92 HNSVVDS 98

[Close]

BLAST of Csor.00g241450 vs. ExPASy TrEMBL
Match: A0A0A0KPP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.82e-14
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 5  LSNTSISFLLLLIL-LPPFTSARPPPATMPT----HNFLPTPNAAIQFQRQFFSFLPRGV 64
          ++++SI F+LLLIL LP FT+ARP PAT  T    HN   T   A +F  Q FSFLP+G 
Sbjct: 1  MASSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTHLT--TAFRFNHQIFSFLPKG- 60

Query: 65 PIPPSAPSKRHNSVLHSA 77
          PIPPSAPSKRHNS+++SA
Sbjct: 61 PIPPSAPSKRHNSLINSA 75

[Close]

BLAST of Csor.00g241450 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.27e-08
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 12 FLLLLILLPPFTSARPPPATM--PTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPSAPSKR 71
          F+LLL+LL  F+SA  P  TM  P  +       A ++  Q F FLP+GVPIPPS PS R
Sbjct: 28 FILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDR 87

Query: 72 HNSVLHS 76
          HNSV+ S
Sbjct: 88 HNSVVDS 94

[Close]

BLAST of Csor.00g241450 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.39e-08
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 12 FLLLLILLPPFTSARPPPATM--PTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPSAPSKR 71
          F+LLL+LL  F+SA  P  TM  P  +       A ++  Q F FLP+GVPIPPS PS R
Sbjct: 32 FILLLLLLSGFSSATRPGGTMEFPDMSNSNYKTTAFRYAGQTFGFLPKGVPIPPSGPSDR 91

Query: 72 HNSVLHS 76
          HNSV+ S
Sbjct: 92 HNSVVDS 98

[Close]

BLAST of Csor.00g241450 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.90e-08
Identity = 38/78 (48.72%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 6  SNTSISF---LLLLILLPPFTSARPPPATMPTHNFLPTPN----AAIQFQRQFFSFLPRG 65
          S TSI     LLLL+LL   +SA  P  TM      P  +     A ++  Q FSFLP+G
Sbjct: 6  SQTSIPIFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKG 65

Query: 66 VPIPPSAPSKRHNSVLHS 76
          VPIPPS PS RHNSV+ S
Sbjct: 66 VPIPPSGPSDRHNSVVDS 83

[Close]

BLAST of Csor.00g241450 vs. ExPASy TrEMBL
Match: A0A067FVE8 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038148mg PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.62e-07
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 12 FLLLLILLPPFTSARPPPATMPTHNFLPTPNAAIQFQRQFFSFLPRGVPIPPSAPSKRHN 71
          FL++++L+    +ARP   TM + N +     + +++RQ F+FLP+G PIPPS PSKRHN
Sbjct: 23 FLIVIVLIGSCEAARPG-TTMDSVN-VKLHKTSFRYKRQRFNFLPKGTPIPPSGPSKRHN 82

Query: 72 SVLHS 76
          SV+ S
Sbjct: 83 SVVDS 85

[Close]

BLAST of Csor.00g241450 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 52 FSFLPRGVPIPPSAPSKRHNSVLHS 77
          F +LP+GVPIPPSAPSKRHNS ++S
Sbjct: 50 FGYLPKGVPIPPSAPSKRHNSFVNS 74

The following BLAST results are available for this feature:

BLAST of Csor.00g241450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	1.5e-04	76.00	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of Csor.00g241450 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601760.1	2.51e-49	100.00	hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6579701.1	1.14e-19	63.77	hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN51548.1	7.89e-14	58.97	hypothetical protein Csa_008377 [Cucumis sativus]	[more]
KAA0034518.1	2.61e-08	50.75	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	2.87e-08	50.75	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of Csor.00g241450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPP8	3.82e-14	58.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1	[more]
A0A5A7SV51	1.27e-08	50.75	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3CCP4	1.39e-08	50.75	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0KR07	7.90e-08	48.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]
A0A067FVE8	1.62e-07	46.15	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g038148mg PE=4 SV=1	[more]

BLAST of Csor.00g241450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	1.1e-05	76.00	Putative membrane lipoprotein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g241450.m01	Csor.00g241450.m01	mRNA