Csor.00g241330 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g241330
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 13495107 .. 13495596 (+)
RNA-Seq Expression	Csor.00g241330
Synteny	Csor.00g241330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCGCCGTGGGCTACACCATGCCAACGGAAGGAGCGGTCTTCGTCCATAATGTCACGGTCATAAATGAAAAAGAAACCCTCTGGTGGCAGATGAAAATGCAGTCTCTACTGTAGCTTTTGCAGCTCTTTCTTCAATTTCCCCACGTTATCCGTTGGGCTCACTTCCATTGGTATCTTTGAGTTCCCAAATTTCGGTTGCACCATTACTTTCAACTTGTTCTTCGACGACCCACTCGTTGCCACCATCACAGCCGCCGTCATCGTCGACGGCTACGACGGCGCCGTTGTCATCTTGGCGCAGTGGTCAAAACTGTAGGCGATGACCGCAAACAAACCTCAACCTCAGAATTCTCCGACATCTCACTGTCACGCAAGGAACTTTGATCCTGTAAGTCGGCAGGGGAGGCGTTGGGTTAGAGCATGATCCCGTTGATGGGGCCCGAAGAGTTGATTTCGTGGATCCTCTGTTTGAGGCGCCCGATTGA

mRNA sequence

ATGGTATCGCCGTGGGCTACACCATGCCAACGGAAGGAGCGGTCTTCGTCCATAATGTCACGCTCTTTCTTCAATTTCCCCACGTTATCCGTTGGGCTCACTTCCATTGGTATCTTTGAGTTCCCAAATTTCGGTTGCACCATTACTTTCAACTTGTTCTTCGACGACCCACTCGTTGCCACCATCACAGCCGCCGTCATCGTCGACGGCTACGACGGCGCCGTTGTCATCTTGGCGCAGTGGTCAAAACTGGGAGGCGTTGGGTTAGAGCATGATCCCGTTGATGGGGCCCGAAGAGTTGATTTCGTGGATCCTCTGTTTGAGGCGCCCGATTGA

Coding sequence (CDS)

ATGGTATCGCCGTGGGCTACACCATGCCAACGGAAGGAGCGGTCTTCGTCCATAATGTCACGCTCTTTCTTCAATTTCCCCACGTTATCCGTTGGGCTCACTTCCATTGGTATCTTTGAGTTCCCAAATTTCGGTTGCACCATTACTTTCAACTTGTTCTTCGACGACCCACTCGTTGCCACCATCACAGCCGCCGTCATCGTCGACGGCTACGACGGCGCCGTTGTCATCTTGGCGCAGTGGTCAAAACTGGGAGGCGTTGGGTTAGAGCATGATCCCGTTGATGGGGCCCGAAGAGTTGATTTCGTGGATCCTCTGTTTGAGGCGCCCGATTGA

Protein sequence

MVSPWATPCQRKERSSSIMSRSFFNFPTLSVGLTSIGIFEFPNFGCTITFNLFFDDPLVATITAAVIVDGYDGAVVILAQWSKLGGVGLEHDPVDGARRVDFVDPLFEAPD

Homology

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BLAST of Csor.00g241330 vs. NCBI nr
Match: KAG6601771.1 (hypothetical protein SDJN03_07004, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228 bits (581), Expect = 2.35e-75
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MVSPWATPCQRKERSSSIMSRSFFNFPTLSVGLTSIGIFEFPNFGCTITFNLFFDDPLVA 60
           MVSPWATPCQRKERSSSIMSRSFFNFPTLSVGLTSIGIFEFPNFGCTITFNLFFDDPLVA
Sbjct: 1   MVSPWATPCQRKERSSSIMSRSFFNFPTLSVGLTSIGIFEFPNFGCTITFNLFFDDPLVA 60

Query: 61  TITAAVIVDGYDGAVVILAQWSKLGGVGLEHDPVDGARRVDFVDPLFEAPD 111
           TITAAVIVDGYDGAVVILAQWSKLGGVGLEHDPVDGARRVDFVDPLFEAPD
Sbjct: 61  TITAAVIVDGYDGAVVILAQWSKLGGVGLEHDPVDGARRVDFVDPLFEAPD 111

The following BLAST results are available for this feature:

BLAST of Csor.00g241330 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g241330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601771.1	2.35e-75	100.00	hypothetical protein SDJN03_07004, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g241330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g241330 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g241330.m01	Csor.00g241330.m01	mRNA