Csor.00g239440 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g239440
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 482489 .. 482893 (+)
RNA-Seq Expression	Csor.00g239440
Synteny	Csor.00g239440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codonsinglepolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGTCTCACCCTTCTTCCACCGCCCATCCGCCGTCGTCTTCCCCAAATTCAGGCCTGTTTCAACGATTTCCCCGCCATGGCTACGCCGTCAGGCTGCGGCACCGAGATGTGTTAGTCCGGGTGGCTGGGGGAGCTCTGTGGCGGAGCTGGAGAGAGAATTGTCGGTGGAGGGAGAAGAGTGGCTGAAACTAGGGAGGCTAGAGGAGAAATGCGGCAGTGGAGGAAAAGGAATGGTGGAGTTGCTTGAATCTTTGGAAAGAGAAGCCATTATGCGGGAAGATGAAGGTCGAGACCCTACTGATTACCATAGGAGGGCTAAGATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTTAAGCAACATTCTGATGATGAATCTGAAGAGGAAGAAGAAGGATGA

mRNA sequence

ATGCAAGTCTCACCCTTCTTCCACCGCCCATCCGCCGTCGTCTTCCCCAAATTCAGGCCTGTTTCAACGATTTCCCCGCCATGGCTACGCCGTCAGGCTGCGGCACCGAGATGTGTTAGTCCGGGTGGCTGGGGGAGCTCTGTGGCGGAGCTGGAGAGAGAATTGTCGGTGGAGGGAGAAGAGTGGCTGAAACTAGGGAGGCTAGAGGAGAAATGCGGCAGTGGAGGAAAAGGAATGGTGGAGTTGCTTGAATCTTTGGAAAGAGAAGCCATTATGCGGGAAGATGAAGGTCGAGACCCTACTGATTACCATAGGAGGGCTAAGATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTTAAGCAACATTCTGATGATGAATCTGAAGAGGAAGAAGAAGGATGA

Coding sequence (CDS)

ATGCAAGTCTCACCCTTCTTCCACCGCCCATCCGCCGTCGTCTTCCCCAAATTCAGGCCTGTTTCAACGATTTCCCCGCCATGGCTACGCCGTCAGGCTGCGGCACCGAGATGTGTTAGTCCGGGTGGCTGGGGGAGCTCTGTGGCGGAGCTGGAGAGAGAATTGTCGGTGGAGGGAGAAGAGTGGCTGAAACTAGGGAGGCTAGAGGAGAAATGCGGCAGTGGAGGAAAAGGAATGGTGGAGTTGCTTGAATCTTTGGAAAGAGAAGCCATTATGCGGGAAGATGAAGGTCGAGACCCTACTGATTACCATAGGAGGGCTAAGATTTTCAGTACCAGTTCTAGAGTTTTTCAAGCTCTTAAGCAACATTCTGATGATGAATCTGAAGAGGAAGAAGAAGGATGA

Protein sequence

MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGEEWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQALKQHSDDESEEEEEG

Homology

[Close]

BLAST of Csor.00g239440 vs. NCBI nr
Match: KAG6599936.1 (hypothetical protein SDJN03_05169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266 bits (680), Expect = 1.03e-89
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGE 60
           MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGE
Sbjct: 1   MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGE 60

Query: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL 120
           EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL
Sbjct: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL 120

Query: 121 KQHSDDESEEEEEG 134
           KQHSDDESEEEEEG
Sbjct: 121 KQHSDDESEEEEEG 134

[Close]

BLAST of Csor.00g239440 vs. NCBI nr
Match: KAG7030615.1 (hypothetical protein SDJN02_04652, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261 bits (668), Expect = 6.94e-88
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGE 60
           MQVSPFFHRPSAVVFPKFRPVST+SPPWLRRQAAAPRCVSPGGWGSSV ELERELSVEGE
Sbjct: 1   MQVSPFFHRPSAVVFPKFRPVSTVSPPWLRRQAAAPRCVSPGGWGSSVVELERELSVEGE 60

Query: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL 120
           EWLKLGRLEEKCGSGGKGMVELLESLEREAIM EDEGRDPTDYHRRAKIFSTSSRVFQAL
Sbjct: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMGEDEGRDPTDYHRRAKIFSTSSRVFQAL 120

Query: 121 KQHSDDESEEEEEG 134
           KQHSDDESEEEEEG
Sbjct: 121 KQHSDDESEEEEEG 134

[Close]

BLAST of Csor.00g239440 vs. NCBI nr
Match: XP_022941969.1 (uncharacterized protein LOC111447176 [Cucurbita moschata])

HSP 1 Score: 254 bits (650), Expect = 3.96e-84
Identity = 128/132 (96.97%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGE 60
           MQVSPFFHRPSAVVFPKFRPVST+SPPWLRRQAAAPRCVS GGWGSSVAELERELSVEGE
Sbjct: 1   MQVSPFFHRPSAVVFPKFRPVSTVSPPWLRRQAAAPRCVSQGGWGSSVAELERELSVEGE 60

Query: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL 120
           EWLKLGRLEEKCGSGGKGMVELLESLEREAIM EDEGRDPTDYHRRAKIFSTSSRVFQAL
Sbjct: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMGEDEGRDPTDYHRRAKIFSTSSRVFQAL 120

Query: 121 KQHSDDESEEEE 132
           KQHSDDESEE E
Sbjct: 121 KQHSDDESEERE 132

[Close]

BLAST of Csor.00g239440 vs. NCBI nr
Match: XP_023541783.1 (uncharacterized protein LOC111801831 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248 bits (634), Expect = 1.08e-81
Identity = 124/132 (93.94%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGE 60
           MQVSPFFHRPSAVVFPKFRPVST+SPPWLRRQ AAPRCVS GGWGSSVAELERE SVEGE
Sbjct: 1   MQVSPFFHRPSAVVFPKFRPVSTVSPPWLRRQGAAPRCVSQGGWGSSVAELEREFSVEGE 60

Query: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL 120
           EWLKLGRLEEKCGSGGKGMVELLESLEREAIM EDEGRDPT+YHRRAKIFSTSSRVFQAL
Sbjct: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMGEDEGRDPTNYHRRAKIFSTSSRVFQAL 120

Query: 121 KQHSDDESEEEE 132
           K+HSDDESEE E
Sbjct: 121 KEHSDDESEERE 132

[Close]

BLAST of Csor.00g239440 vs. NCBI nr
Match: XP_022988679.1 (uncharacterized protein LOC111485933 [Cucurbita maxima])

HSP 1 Score: 180 bits (456), Expect = 1.73e-55
Identity = 94/122 (77.05%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 6   FFHRPSAVVFPKFRPVSTISPPWLRRQ--AAAPRCVSPGGWGSSVAELERELSVEGEEWL 65
           FFHR S VVFPK RP+S ISPPW  R+  AAAPRCVS GGWG SVAE E E      EWL
Sbjct: 17  FFHRSSTVVFPKIRPISAISPPWFCRRVAAAAPRCVSQGGWGGSVAEQEIE------EWL 76

Query: 66  KLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQALKQH 125
           KLGRL+EKCG GGKG+VELLE LEREAIM EDEGR+PTDY+RRAKIFSTSS VFQALKQH
Sbjct: 77  KLGRLDEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQH 132

[Close]

BLAST of Csor.00g239440 vs. ExPASy TrEMBL
Match: A0A6J1FPZ7 (uncharacterized protein LOC111447176 OS=Cucurbita moschata OX=3662 GN=LOC111447176 PE=4 SV=1)

HSP 1 Score: 254 bits (650), Expect = 1.92e-84
Identity = 128/132 (96.97%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MQVSPFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGE 60
           MQVSPFFHRPSAVVFPKFRPVST+SPPWLRRQAAAPRCVS GGWGSSVAELERELSVEGE
Sbjct: 1   MQVSPFFHRPSAVVFPKFRPVSTVSPPWLRRQAAAPRCVSQGGWGSSVAELERELSVEGE 60

Query: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL 120
           EWLKLGRLEEKCGSGGKGMVELLESLEREAIM EDEGRDPTDYHRRAKIFSTSSRVFQAL
Sbjct: 61  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMGEDEGRDPTDYHRRAKIFSTSSRVFQAL 120

Query: 121 KQHSDDESEEEE 132
           KQHSDDESEE E
Sbjct: 121 KQHSDDESEERE 132

[Close]

BLAST of Csor.00g239440 vs. ExPASy TrEMBL
Match: A0A6J1JM89 (uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933 PE=4 SV=1)

HSP 1 Score: 180 bits (456), Expect = 8.40e-56
Identity = 94/122 (77.05%), Postives = 100/122 (81.97%), Query Frame = 0


Query: 6   FFHRPSAVVFPKFRPVSTISPPWLRRQ--AAAPRCVSPGGWGSSVAELERELSVEGEEWL 65
           FFHR S VVFPK RP+S ISPPW  R+  AAAPRCVS GGWG SVAE E E      EWL
Sbjct: 17  FFHRSSTVVFPKIRPISAISPPWFCRRVAAAAPRCVSQGGWGGSVAEQEIE------EWL 76

Query: 66  KLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQALKQH 125
           KLGRL+EKCG GGKG+VELLE LEREAIM EDEGR+PTDY+RRAKIFSTSS VFQALKQH
Sbjct: 77  KLGRLDEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQH 132

[Close]

BLAST of Csor.00g239440 vs. ExPASy TrEMBL
Match: A0A6J1FW01 (uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC111447817 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 4.41e-55
Identity = 95/123 (77.24%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 5   PFFHRPSAVVFPKFRPVSTISPPWLRRQ--AAAPRCVSPGGWGSSVAELERELSVEGEEW 64
           PFFHR S VVF K RP+S ISP WL R+  AAAPRCVS GGWG SVAE E E      EW
Sbjct: 16  PFFHRSSTVVFHKLRPISAISPSWLCRRVAAAAPRCVSQGGWGGSVAEPEIE------EW 75

Query: 65  LKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQALKQ 124
           LKLGRLEEKCG GGKG+VELLE LEREAIM EDEGR+PTDY+RRAKIFSTSS VFQALKQ
Sbjct: 76  LKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTSSEVFQALKQ 132

[Close]

BLAST of Csor.00g239440 vs. ExPASy TrEMBL
Match: A0A6J1D0H7 (uncharacterized protein LOC111015926 OS=Momordica charantia OX=3673 GN=LOC111015926 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 4.09e-50
Identity = 91/122 (74.59%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 5   PFFHRPSAVVFPKFRPVSTISPPWLRRQAAAPRCVSPGGWGSSVAELERELSVEGEEWLK 64
           P  HRPSAV   KFRP S ISP W RR+  A RCVS GGWGS  AELERE++ EGEEWLK
Sbjct: 15  PSSHRPSAV---KFRPTSAISPAW-RRRGTASRCVSQGGWGSG-AELEREVAAEGEEWLK 74

Query: 65  LGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQALKQHS 124
           LGRL+EKCG GGKG+VELLE LE EAIM EDEGRDP DY RRAKIFSTSS+VFQALKQ +
Sbjct: 75  LGRLKEKCG-GGKGVVELLECLEMEAIMGEDEGRDPIDYDRRAKIFSTSSKVFQALKQQN 130

Query: 125 DD 126
            D
Sbjct: 135 SD 130

[Close]

BLAST of Csor.00g239440 vs. ExPASy TrEMBL
Match: A0A0A0KQQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 6.16e-50
Identity = 86/125 (68.80%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 5   PFFHRPSAVVFPKFRPVSTISPPWLRRQ----AAAPRCVSPGGWGSSVAELERELSVEGE 64
           P  HRPS   FP  RP  ++S PWL  +     A PRCVS GGWGSSV   E ++    E
Sbjct: 14  PLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDI----E 73

Query: 65  EWLKLGRLEEKCGSGGKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQAL 124
           EWLKLGRLEEKCG GGKG+VELLE LE+EAIM EDEGRDPTDY+RRAKIFSTSS VFQAL
Sbjct: 74  EWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQAL 133

[Close]

BLAST of Csor.00g239440 vs. TAIR 10
Match: AT5G05220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 50/123 (40.65%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 10  PSAVVFPKFRPVSTISPPWL------RRQAAAPRCVSPGGWGSSVAELERELSVEGEEWL 69
           PS  ++    PV+ I    L       R  AA RCV+    GS  A     ++ E EE  
Sbjct: 15  PSQRIYKTSSPVTAIPQTKLSLKVKKERWVAAARCVAS---GSDYAAAMEPITPEEEE-- 74

Query: 70  KLGRLEEKCGSG-GKGMVELLESLEREAIMREDEGRDPTDYHRRAKIFSTSSRVFQALKQ 126
           +L +    CG    +G+ ELLE LE+EAIM  D+GRDP DY+RRAKIF  SS++F+ L +
Sbjct: 75  ELTQRRGICGGEVNRGVWELLECLEKEAIMGNDDGRDPRDYNRRAKIFDKSSKIFKNLNE 132

The following BLAST results are available for this feature:

BLAST of Csor.00g239440 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g239440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599936.1	1.03e-89	100.00	hypothetical protein SDJN03_05169, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7030615.1	6.94e-88	97.76	hypothetical protein SDJN02_04652, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022941969.1	3.96e-84	96.97	uncharacterized protein LOC111447176 [Cucurbita moschata]	[more]
XP_023541783.1	1.08e-81	93.94	uncharacterized protein LOC111801831 [Cucurbita pepo subsp. pepo]	[more]
XP_022988679.1	1.73e-55	77.05	uncharacterized protein LOC111485933 [Cucurbita maxima]	[more]

BLAST of Csor.00g239440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FPZ7	1.92e-84	96.97	uncharacterized protein LOC111447176 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1JM89	8.40e-56	77.05	uncharacterized protein LOC111485933 OS=Cucurbita maxima OX=3661 GN=LOC111485933...	[more]
A0A6J1FW01	4.41e-55	77.24	uncharacterized protein LOC111447817 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A6J1D0H7	4.09e-50	74.59	uncharacterized protein LOC111015926 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A0A0KQQ4	6.16e-50	68.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1	[more]

BLAST of Csor.00g239440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05220.1	1.2e-12	40.65	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37758	OS03G0334300 PROTEIN	coord: 30..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g239440.m01	Csor.00g239440.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast