Csor.00g236770 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g236770
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRmlC-like cupins superfamily protein
LocationCsor_Chr08: 7265413 .. 7266975 (-)
RNA-Seq ExpressionCsor.00g236770
SyntenyCsor.00g236770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCAGGTGCTCTTCCGTCCTCTTTACCAAACCTGCTCTAGAGACTTTTGGCTCTTTGATTGAATTGAATGATTTATCTGCAAATTTGGAGTGCTGTACAGGAAATTAAACCCTAAATAATATGAAAACGATGAAGAGTTGAAGAAAATCCGAGAGGACGGGATGCTTCACTAATCCATCGATGTTTTCCATTTCTATTTTTTAGTCGAACTTTTTTGGATACGTTTCGTTCTTCTTGAGATGTTGTAGGATTTACTTGATATATGCACACAGAAACTTGGTGATTATGAAGAAATTCGTTACACTTGGATCGAACTGACCATCTATTCGAAGATTGTTATTCATGTAAATCTTAGTCAAAACAAAAATAAAATTATTTCATAGGTTACAATCTTCATAGTTGGATTATCCAGAGTTAATGAGGCTGTTCCAGGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTGTGTGTATTCTTCTGTACTATACTATGGCAATCAATACAAATCTGTGAGGTTTAGCTCAGGCTGTGCATTGTTGAGTATGGCTTAGATTAAATACTATATAAATTTGCCAACTGCTGTTGAAACATGGCTTAATAAATGTCTGAGCCTCATATTATTTATGAATTGAGCTTCTCAAAAGAATTGTAATCTGAACCACTTTGGAAAATTATTGGCCCCATTTGATTTTATGATTAAACGATAGAGATTTCTCTCTTGCAGGAAAGATATGGAATCTCGAATATAAAATTCTTATAAACTACATTTATTTTTATTGTTCTACAGACCCTGTATTTGTGTCGATTAATACTGAAGCGCGTAGTACCTTATCACGAAAGCCTGTTTGATAATGTTTTACAGACTATTTGAGTTTGTGTGTCAGATAAATAGTTCAATCATTTCCTTCAGAATACTGTTCTTGTTATACATGTCAATTATATTCTTCCCTACAGTATTGAGGGGTAGCTATGGTGTTTTTGCTTTAGAGATTATTAACTTTTTTAGTTCTCTTGTTGACCAGAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGGTAAGCATCTTCTGAATTTGCAACATTGATGTTAATTACATGCTCTTTCTATCCATTCTCGCCAGGCTTTTGATGAATGATCTACATTTTCGACGTCTTGTGCACTTGTATTGCCAAATATTGCAGCTGTTATGATATTAAAATCCCATATGCCTGCTTTACAAACTTCATTTATACCGTCTAGTTAACACAAAGAGTGCTTCTTCTTAAGTGAGTGCTTCTTCTTAAGTGAGTGCTTCTTCTTAAGTGTTATGAATTTTCTTAAAACTGAGTTTGATTCTGTTTGCAGAATTTTGTTAG

mRNA sequence

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCAGGTGCTCTTCCGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGAATTTTGTTAG

Coding sequence (CDS)

ATGAACGATAGCAATGAAGACCAGAGGCTTCCTCTTCATGGCAACCCTAAAGAGTTCGTCTCCATGGACCAATTAGCAGGTGCTCTTCCGGAGAGCCCATTTGGACCCCGTTTAACCGACCACAAGGGCAGCATCCAGCAAGGAAAGAGTACCTCAACACCTTCACTGAGAAAGCTGGAGCGCCACTCCAGGCTCATTAAAGACTTAAAGTTGCAGGGCTCTTGGAGATCAGAGACTCGTTTATCGCTGGAAAATGTAGGAAAGTTTGTTGCCACAAAGCAAATCTCTGAATTTTGTTAG

Protein sequence

MNDSNEDQRLPLHGNPKEFVSMDQLAGALPESPFGPRLTDHKGSIQQGKSTSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLENVGKFVATKQISEFC
Homology
BLAST of Csor.00g236770 vs. ExPASy Swiss-Prot
Match: F6HDT7 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04080 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.5e-04
Identity = 20/26 (76.92%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS+EDQRLP H +PKEFVS+DQLA
Sbjct: 17 MDDSDEDQRLPHHRDPKEFVSLDQLA 42

BLAST of Csor.00g236770 vs. ExPASy Swiss-Prot
Match: Q8H185 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana OX=3702 GN=ARD4 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 9.4e-04
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DSNEDQRLP H NPKE VS+D LA
Sbjct: 8  MDDSNEDQRLPHHRNPKELVSLDYLA 33

BLAST of Csor.00g236770 vs. NCBI nr
Match: KAG6593872.1 (hypothetical protein SDJN03_13348, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200 bits (508), Expect = 1.34e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAGALPESPFGPRLTDHKGSIQQGKSTSTPSLRKLE 60
          MNDSNEDQRLPLHGNPKEFVSMDQLAGALPESPFGPRLTDHKGSIQQGKSTSTPSLRKLE
Sbjct: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAGALPESPFGPRLTDHKGSIQQGKSTSTPSLRKLE 60

Query: 61 RHSRLIKDLKLQGSWRSETRLSLENVGKFVATKQISEFC 99
          RHSRLIKDLKLQGSWRSETRLSLENVGKFVATKQISEFC
Sbjct: 61 RHSRLIKDLKLQGSWRSETRLSLENVGKFVATKQISEFC 99

BLAST of Csor.00g236770 vs. NCBI nr
Match: KAG7026216.1 (hypothetical protein SDJN02_12715, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (391), Expect = 2.79e-46
Identity = 82/95 (86.32%), Postives = 82/95 (86.32%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAGAL----------PESPFGPRLTDHKGSIQQGKS 60
          MNDSNEDQRLPLHGNPKEFVSMDQLA  L           ESPFGPRLTDHKGSIQQGKS
Sbjct: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAVELFWIRFVLLEMLESPFGPRLTDHKGSIQQGKS 60

Query: 61 TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLEN 85
          TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLEN
Sbjct: 61 TSTPSLRKLERHSRLIKDLKLQGSWRSETRLSLEN 95

BLAST of Csor.00g236770 vs. NCBI nr
Match: XP_008449312.1 (PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 [Cucumis melo] >KAA0057454.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 [Cucumis melo var. makuwa] >TYK30153.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 7.64e-05
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 26
          MNDSNEDQRLP H NPKEFVSM+QLA
Sbjct: 8  MNDSNEDQRLPHHSNPKEFVSMNQLA 33

BLAST of Csor.00g236770 vs. NCBI nr
Match: XP_023547962.1 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 49.7 bits (117), Expect = 1.48e-04
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 26
          M+DSNEDQRLP H NPKEFVSMDQLA
Sbjct: 8  MDDSNEDQRLPHHRNPKEFVSMDQLA 33

BLAST of Csor.00g236770 vs. NCBI nr
Match: XP_021636815.1 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like [Hevea brasiliensis])

HSP 1 Score: 47.8 bits (112), Expect = 1.76e-04
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAGALP 30
          M+DS EDQRLP H NPKEFVS DQLA  LP
Sbjct: 18 MDDSYEDQRLPHHKNPKEFVSFDQLAEKLP 47

BLAST of Csor.00g236770 vs. ExPASy TrEMBL
Match: A0A5A7UQS4 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001370 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.70e-05
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 26
          MNDSNEDQRLP H NPKEFVSM+QLA
Sbjct: 8  MNDSNEDQRLPHHSNPKEFVSMNQLA 33

BLAST of Csor.00g236770 vs. ExPASy TrEMBL
Match: A0A1S3BLR9 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Cucumis melo OX=3656 GN=LOC103491227 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.70e-05
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 26
          MNDSNEDQRLP H NPKEFVSM+QLA
Sbjct: 8  MNDSNEDQRLPHHSNPKEFVSMNQLA 33

BLAST of Csor.00g236770 vs. ExPASy TrEMBL
Match: A0A392NE59 (12-dihydroxy-3-keto-5-methylthiopentene dioxygenase (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0018484 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.31e-04
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 26
          M+DSNEDQRLP H  PKEFVS+DQLA
Sbjct: 34 MDDSNEDQRLPHHKEPKEFVSLDQLA 59

BLAST of Csor.00g236770 vs. ExPASy TrEMBL
Match: A0A6J1L5T6 (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Cucurbita maxima OX=3661 GN=LOC111499393 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.71e-04
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 26
          M+DS+EDQRLP H NPKEFVSMDQLA
Sbjct: 8  MDDSSEDQRLPHHRNPKEFVSMDQLA 33

BLAST of Csor.00g236770 vs. ExPASy TrEMBL
Match: A0A7J6WBW9 (Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_015592 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.17e-04
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLAGA 28
          M+DS+ED+RLP H +PKEFVS+DQLAG+
Sbjct: 1  MDDSDEDRRLPHHRDPKEFVSLDQLAGS 28

BLAST of Csor.00g236770 vs. TAIR 10
Match: AT5G43850.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 6.7e-05
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DSNEDQRLP H NPKE VS+D LA
Sbjct: 8  MDDSNEDQRLPHHRNPKELVSLDYLA 33

BLAST of Csor.00g236770 vs. TAIR 10
Match: AT4G14716.1 (acireductone dioxygenase 1 )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEFVS+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFVSLDKLA 43

BLAST of Csor.00g236770 vs. TAIR 10
Match: AT4G14710.1 (RmlC-like cupins superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEF+S+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFLSLDKLA 43

BLAST of Csor.00g236770 vs. TAIR 10
Match: AT4G14710.2 (RmlC-like cupins superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEF+S+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFLSLDKLA 43

BLAST of Csor.00g236770 vs. TAIR 10
Match: AT4G14710.3 (RmlC-like cupins superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 1  MNDSNEDQRLPLHGNPKEFVSMDQLA 27
          M+DS EDQRLP H +PKEF+S+D+LA
Sbjct: 18 MDDSEEDQRLPHHKDPKEFLSLDKLA 43

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
F6HDT75.5e-0476.921,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Vitis vinifera OX=2976... [more]
Q8H1859.4e-0476.921,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
KAG6593872.11.34e-64100.00hypothetical protein SDJN03_13348, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026216.12.79e-4686.32hypothetical protein SDJN02_12715, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_008449312.17.64e-0588.46PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 [Cucumis melo]... [more]
XP_023547962.11.48e-0488.461,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like [Cucurbita pepo subs... [more]
XP_021636815.11.76e-0476.671,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
A0A5A7UQS43.70e-0588.461,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Cucumis melo var. makuwa... [more]
A0A1S3BLR93.70e-0588.461,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Cucumis melo OX=3656 GN=... [more]
A0A392NE593.31e-0480.7712-dihydroxy-3-keto-5-methylthiopentene dioxygenase (Fragment) OS=Trifolium medi... [more]
A0A6J1L5T63.71e-0484.621,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Cucurbita maxima OX=3661... [more]
A0A7J6WBW95.17e-0471.43Uncharacterized protein OS=Thalictrum thalictroides OX=46969 GN=FRX31_015592 PE=... [more]
Match NameE-valueIdentityDescription
AT5G43850.16.7e-0576.92RmlC-like cupins superfamily protein [more]
AT4G14716.11.5e-0473.08acireductone dioxygenase 1 [more]
AT4G14710.13.3e-0469.23RmlC-like cupins superfamily protein [more]
AT4G14710.23.3e-0469.23RmlC-like cupins superfamily protein [more]
AT4G14710.33.3e-0469.23RmlC-like cupins superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g236770.m01Csor.00g236770.m01mRNA