Csor.00g236620 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g236620
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	40S ribosomal protein S15
Location	Csor_Chr08: 7165323 .. 7167684 (+)
RNA-Seq Expression	Csor.00g236620
Synteny	Csor.00g236620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAATTTTCAACACTTCATTTTCTGTAAATTATCGTCTCTCTCTCTCTCTCTCTTCCAGTTTCGTTAATGGCGTTGCTTCGGCCATCTTCAGGCGGATGTAGAAGCCGATGTTGCAGTGGCGGGACAGCCAAAGAAGAGAACGTTCAAGAAGTTCAGCTTCCGCGGCGTCGATTTGGATGCTTTGCTCGATATGTCTACCGATGAGCTCGTCAAGCTCTTCACTGCTCGTGCTCGCAGAAGGTCTCTATTACTGAATATGTGATGAATTTATTTTGAGTTAATTCGATATTTTTTTATCTTAATTTTCTATTGGATGATTTATGGGATAGGTTTCGAAGGGGTTTGACTAGGAAGCCAATGGCCCTTATCAAGAAGCTCCGCAAAGCGGTAACTATCTTTTAGATCTTTTTCTTAACTCTAAGACAATTCATTGGAGGACTCACTTTACATTATTTGGTATTGTTTCCTTGAATGCACTGGCTGTATGCAAGTGGGTATAATTGTTGATGGACTCGTTACTGTATTGTTGTGCATCTGAGATGTAATTCGAGTGATTTCTAGGGGAAGCATCTTAATCATGCTGCTCAGTTTTTCTCCAAGTTTCTTCTTGATGAGCAGATACGTGCAAAGTAAATTTATGTAGTTAGACATGATATCTTTAATTTATGTTCCATGGATCCTTTTCTAGGCTGGTATTAACTTCTATGCTCCATTTTGACCTGCAATTTACTTTAAATGAGCAGTAGTAAAATAGAACATTCGCCAAGAATTTCATTAACATAATCTTTCGCCCTGAATCTTAGGATGGAGAATTGTGCTCTCTTTGTTCTTTGTTACACCTTTCAAAGATATTGGAGAAACTAGTCTGTCGTGATATTGCTGACAGGTTATTACGATGGGAAATTGAATCAGTTTTGACACGAATAAATGAACTCTCTTTAATTTATTAGAAACCATGGATCTCCACAATGGTATGATATTGTCCACTTTGAGCATAACCTCTCATGGTTTTGCCTTTTTGTTTACCAAAACCCTCGTACCAATGGAGATGTATTCATTACTTGTAAATCCATGATCATCCCCTTAATTCCATCGTGGGACTCCTTCCTAACAATTCTCAACAATACTCCCCTTGAACGAAGTACACCATAAAGCCTCTCCTGAGCCCTATGTAGCCTTGAACAACTTCCCTTTGATCGAGGCTCAACTCCTTTCTCAGGAGCTCTTGAACAAAGTACACCCTTTCTTTGATACTCGAGTCAATTTTGACTACACCTTCAAGGCTAGAAACTCCTTTGTATGATACTTGATGATTCTATTGACATGCCTAAGTTAGGGGCATGACTCTTATAATAGGTTAGAAACCATGGACCTCCATAGTAGTATGATGTTGTCCACTTTAAGCATAAGCTCTCATGGCTTTCCCCAAAAGGCCTCATATCAATTGAGATGTATTCCTTACTTGTAAACCCATGATCATCCCCTTAATTAGCTATTGGACTCCCACCCAACAATCCTCAACATTATTTCTCCGGAACTTTTGTAGGCTTCATTATTAATTTAGGTATAACTTTAAAGCTAACATCTCCCACTACTGCTTCTTGCTATGCCTCAACCTTCTTTTTTGCCCTTGATTTATCGTATCCTAAAGTGGGATCATACCCAATGGTAGCTTTGTAAATTTTATTTATCATTAATCTCTGAATCTCTAAGTATACCGTTGTGTTAATTTTTTAATATCCTTGTTTTTGCTATTGGCTTTCCCATAACTACCAATGGGAAGTTACGGTCATGGCCCATCGGTAGATTTGGAAGTTAATGTGCCTTGTGTCTTTGCAATTCATCATTATACTTCTGAGTTCTAACAGGATGGGATCATACGCCAATGGTAGATTTGAAAGTAATTTTCCTGGAGGCTCTGAATTTCATCATTATACTTAGGAGATTGGTAGACTTGAAAATATATGTACAATGAATCTCTGAAATTCATCATGTTTGTGCCCTTGTCTCCCCACCTAGATCTCTTTCCTTCAACCATAATCTGAAGAATAGGTTTCTTATTTTTTTTCTCTCGTCTCATTCATTTTCTTTGCTGCTGCCTTGAATAGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCTGTACGAACTCACCTCCGTAATATGATCATCGTCCCAGAGATGATTGGAAGCATCATTGGTGTTTACAATGGAAAAACCTTCAACCAAGTTGAAATCAAGCCAGAGATGATCGGGCATTACCTTGCAGAGTTTTCGATTTCATACAAGCCTGTTAAGCATGGTAGACCCGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTAAAGTGA

mRNA sequence

ATGGCGGATGTAGAAGCCGATGTTGCAGTGGCGGGACAGCCAAAGAAGAGAACGTTCAAGAAGTTCAGCTTCCGCGGCGTCGATTTGGATGCTTTGCTCGATATGTCTACCGATGAGCTCGTCAAGCTCTTCACTGCTCGTGCTCGCAGAAGGTTTCGAAGGGGTTTGACTAGGAAGCCAATGGCCCTTATCAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCTGTACGAACTCACCTCCGTAATATGATCATCGTCCCAGAGATGATTGGAAGCATCATTGGTGTTTACAATGGAAAAACCTTCAACCAAGTTGAAATCAAGCCAGAGATGATCGGGCATTACCTTGCAGAGTTTTCGATTTCATACAAGCCTGTTAAGCATGGTAGACCCGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTAAAGTGA

Coding sequence (CDS)

ATGGCGGATGTAGAAGCCGATGTTGCAGTGGCGGGACAGCCAAAGAAGAGAACGTTCAAGAAGTTCAGCTTCCGCGGCGTCGATTTGGATGCTTTGCTCGATATGTCTACCGATGAGCTCGTCAAGCTCTTCACTGCTCGTGCTCGCAGAAGGTTTCGAAGGGGTTTGACTAGGAAGCCAATGGCCCTTATCAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCTGTACGAACTCACCTCCGTAATATGATCATCGTCCCAGAGATGATTGGAAGCATCATTGGTGTTTACAATGGAAAAACCTTCAACCAAGTTGAAATCAAGCCAGAGATGATCGGGCATTACCTTGCAGAGTTTTCGATTTCATACAAGCCTGTTAAGCATGGTAGACCCGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTAAAGTGA

Protein sequence

MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK

Homology

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BLAST of Csor.00g236620 vs. ExPASy Swiss-Prot
Match: Q08112 (40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.4e-75
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. ExPASy Swiss-Prot
Match: Q9FY64 (40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.4e-75
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. ExPASy Swiss-Prot
Match: Q945U1 (40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-72
Identity = 139/153 (90.85%), Postives = 143/153 (93.46%), Query Frame = 0


Query: 1   MADVEADVAVAG-QPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADV   V V G QPKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RK
Sbjct: 1   MADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

[Close]

BLAST of Csor.00g236620 vs. ExPASy Swiss-Prot
Match: P31674 (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 5.6e-72
Identity = 132/150 (88.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 3   DVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMA 62
           +VE +VA   QPKKRTF+K+S+RGVDLDALLDMSTD+LV+LF ARARRRF+RGL RKPMA
Sbjct: 5   EVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMA 64

Query: 63  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 122
           LIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHY
Sbjct: 65  LIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHY 124

Query: 123 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 125 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

[Close]

BLAST of Csor.00g236620 vs. ExPASy Swiss-Prot
Match: O65059 (40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.6e-71
Identity = 136/152 (89.47%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MAD + DV    QPKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRF+RGL R+P
Sbjct: 1   MADADVDVGPV-QPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

[Close]

BLAST of Csor.00g236620 vs. NCBI nr
Match: XP_022930318.1 (40S ribosomal protein S15-4 [Cucurbita moschata] >XP_023000557.1 40S ribosomal protein S15-4 [Cucurbita maxima] >XP_023513952.1 40S ribosomal protein S15-4 [Cucurbita pepo subsp. pepo] >KAG6593857.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026189.1 40S ribosomal protein S15 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299 bits (766), Expect = 3.03e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. NCBI nr
Match: XP_022958790.1 (40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_023006761.1 40S ribosomal protein S15-4-like [Cucurbita maxima] >XP_023548520.1 40S ribosomal protein S15-4-like [Cucurbita pepo subsp. pepo] >KAG6574934.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013502.1 40S ribosomal protein S15, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 298 bits (763), Expect = 8.69e-102
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. NCBI nr
Match: XP_030470053.1 (40S ribosomal protein S15-4-like isoform X1 [Syzygium oleosum] >XP_030533959.1 40S ribosomal protein S15-4 isoform X1 [Rhodamnia argentea])

HSP 1 Score: 295 bits (756), Expect = 1.02e-100
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. NCBI nr
Match: XP_031398922.1 (40S ribosomal protein S15-4-like [Punica granatum] >KAF8014509.1 hypothetical protein BT93_H0350 [Corymbia citriodora subsp. variegata] >PKI61653.1 hypothetical protein CRG98_017965 [Punica granatum])

HSP 1 Score: 294 bits (752), Expect = 4.14e-100
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MAEVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. NCBI nr
Match: KAF3452310.1 (hypothetical protein FNV43_RR02743 [Rhamnella rubrinervis])

HSP 1 Score: 294 bits (752), Expect = 4.14e-100
Identity = 149/152 (98.03%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE DVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MADVETDVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. ExPASy TrEMBL
Match: A0A6J1KDZ2 (40S ribosomal protein S15-4 OS=Cucurbita maxima OX=3661 GN=LOC111494798 PE=3 SV=1)

HSP 1 Score: 299 bits (766), Expect = 1.47e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. ExPASy TrEMBL
Match: A0A6J1EUT1 (40S ribosomal protein S15-4 OS=Cucurbita moschata OX=3662 GN=LOC111436804 PE=3 SV=1)

HSP 1 Score: 299 bits (766), Expect = 1.47e-102
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. ExPASy TrEMBL
Match: A0A6J1KYN5 (40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111499397 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 4.21e-102
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. ExPASy TrEMBL
Match: A0A6J1H4G4 (40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111459956 PE=3 SV=1)

HSP 1 Score: 298 bits (763), Expect = 4.21e-102
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRKP
Sbjct: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. ExPASy TrEMBL
Match: A0A2I0K0Q9 (40S ribosomal protein S15-4-like OS=Punica granatum OX=22663 GN=LOC116209430 PE=3 SV=1)

HSP 1 Score: 294 bits (752), Expect = 2.00e-100
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MAEVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. TAIR 10
Match: AT1G04270.1 (cytosolic ribosomal protein S15 )

HSP 1 Score: 281.6 bits (719), Expect = 3.8e-76
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. TAIR 10
Match: AT5G09510.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 281.6 bits (719), Expect = 3.8e-76
Identity = 139/152 (91.45%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

[Close]

BLAST of Csor.00g236620 vs. TAIR 10
Match: AT1G04270.2 (cytosolic ribosomal protein S15 )

HSP 1 Score: 275.4 bits (703), Expect = 2.7e-74
Identity = 138/152 (90.79%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRK KREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRK-KREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 151

[Close]

BLAST of Csor.00g236620 vs. TAIR 10
Match: AT5G09500.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-69
Identity = 134/152 (88.16%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MAD E  VA AG  KKRTFKKFSFRGVDLDALLDMSTD+LVKLF +R RRRF RGLTRKP
Sbjct: 1   MADPE--VAAAGIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

[Close]

BLAST of Csor.00g236620 vs. TAIR 10
Match: AT5G09490.1 (Ribosomal protein S19 family protein )

HSP 1 Score: 254.6 bits (649), Expect = 5.0e-68
Identity = 125/152 (82.24%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VE DV+ A   KKRTFKKFSF+GVDLDALLDM TD+LV+LF +R RRR  RGLTRKP
Sbjct: 1   MAEVEPDVSAAALAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIG
Sbjct: 61  MALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 121 HYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

The following BLAST results are available for this feature:

BLAST of Csor.00g236620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08112	5.4e-75	91.45	40S ribosomal protein S15-1 OS=Arabidopsis thaliana OX=3702 GN=RPS15A PE=2 SV=1	[more]
Q9FY64	5.4e-75	91.45	40S ribosomal protein S15-4 OS=Arabidopsis thaliana OX=3702 GN=RPS15D PE=2 SV=1	[more]
Q945U1	1.1e-72	90.85	40S ribosomal protein S15 OS=Elaeis oleifera OX=80265 GN=RPS15 PE=2 SV=1	[more]
P31674	5.6e-72	88.00	40S ribosomal protein S15 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS15 PE=2...	[more]
O65059	1.6e-71	89.47	40S ribosomal protein S15 OS=Picea mariana OX=3335 GN=RPS15 PE=2 SV=1	[more]

BLAST of Csor.00g236620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930318.1	3.03e-102	100.00	40S ribosomal protein S15-4 [Cucurbita moschata] >XP_023000557.1 40S ribosomal p...	[more]
XP_022958790.1	8.69e-102	99.34	40S ribosomal protein S15-4-like [Cucurbita moschata] >XP_023006761.1 40S riboso...	[more]
XP_030470053.1	1.02e-100	98.68	40S ribosomal protein S15-4-like isoform X1 [Syzygium oleosum] >XP_030533959.1 4...	[more]
XP_031398922.1	4.14e-100	98.03	40S ribosomal protein S15-4-like [Punica granatum] >KAF8014509.1 hypothetical pr...	[more]
KAF3452310.1	4.14e-100	98.03	hypothetical protein FNV43_RR02743 [Rhamnella rubrinervis]	[more]

BLAST of Csor.00g236620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDZ2	1.47e-102	100.00	40S ribosomal protein S15-4 OS=Cucurbita maxima OX=3661 GN=LOC111494798 PE=3 SV=...	[more]
A0A6J1EUT1	1.47e-102	100.00	40S ribosomal protein S15-4 OS=Cucurbita moschata OX=3662 GN=LOC111436804 PE=3 S...	[more]
A0A6J1KYN5	4.21e-102	99.34	40S ribosomal protein S15-4-like OS=Cucurbita maxima OX=3661 GN=LOC111499397 PE=...	[more]
A0A6J1H4G4	4.21e-102	99.34	40S ribosomal protein S15-4-like OS=Cucurbita moschata OX=3662 GN=LOC111459956 P...	[more]
A0A2I0K0Q9	2.00e-100	98.03	40S ribosomal protein S15-4-like OS=Punica granatum OX=22663 GN=LOC116209430 PE=...	[more]

BLAST of Csor.00g236620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04270.1	3.8e-76	91.45	cytosolic ribosomal protein S15	[more]
AT5G09510.1	3.8e-76	91.45	Ribosomal protein S19 family protein	[more]
AT1G04270.2	2.7e-74	90.79	cytosolic ribosomal protein S15	[more]
AT5G09500.1	1.2e-69	88.16	Ribosomal protein S19 family protein	[more]
AT5G09490.1	5.0e-68	82.24	Ribosomal protein S19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002222	Ribosomal protein S19/S15	PRINTS	PR00975	RIBOSOMALS19	coord: 105..117 score: 42.93 coord: 117..132 score: 46.98 coord: 85..104 score: 46.13
IPR002222	Ribosomal protein S19/S15	PFAM	PF00203	Ribosomal_S19	coord: 50..135 e-value: 1.7E-33 score: 114.3
IPR002222	Ribosomal protein S19/S15	PIRSF	PIRSF002144	RPS19p_RPS19a_RPS15e_RPS19o	coord: 7..152 e-value: 3.2E-38 score: 127.9
IPR002222	Ribosomal protein S19/S15	PANTHER	PTHR11880	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	coord: 2..152
IPR002222	Ribosomal protein S19/S15	HAMAP	MF_00531	Ribosomal_S19	coord: 48..141 score: 21.249146
IPR023575	Ribosomal protein S19/S15, superfamily	GENE3D	3.30.860.10	30s Ribosomal Protein S19; Chain A	coord: 9..152 e-value: 4.6E-73 score: 245.5
IPR023575	Ribosomal protein S19/S15, superfamily	SUPERFAMILY	54570	Ribosomal protein S19	coord: 55..136
IPR005713	Ribosomal protein S19A/S15e	TIGRFAM	TIGR01025	TIGR01025	coord: 19..152 e-value: 4.8E-71 score: 234.8
None	No IPR available	PANTHER	PTHR11880:SF50	LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15	coord: 2..152
IPR020934	Ribosomal protein S19 conserved site	PROSITE	PS00323	RIBOSOMAL_S19	coord: 105..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g236620.m01	Csor.00g236620.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome