Csor.00g236590 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g236590
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	cellulose synthase-like protein G2
Location	Csor_Chr08: 7148377 .. 7149543 (+)
RNA-Seq Expression	Csor.00g236590
Synteny	Csor.00g236590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGGTAATGAACTCCTCCACGACCCTTTCCTCTTACATGGAGGTTCTTGCAGGCTACCTGTTTGTTAAAATGCCATGTTTCTGGGTTTCGTTTTCTAGACTAAGTGGCGTGGAATGGATGGGGTAAGAGGGCCGGTGTTGTCCGGAACTGGATATTTCTTGAGGAGGAAGATGTTGAATGCAAAAAGCTCTTGGTCGATCCCAAAAGTTCATTGACTCGTTGAATGCAAAAAAGGAGTATCAGTGCGTATCTGCTGCAATGCAGAGGATGGAGTTGTGTTTACCTGTACTCAAAGCGGGCATGCTTCCTGGGTTGCAGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCTTCTCAAATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTGTATGGGGTGGTTCCTCAATGGGGCTTCCTGAAAGGCATCCCCTTGTTCTCCCCACAATTTATTAATAATTCATTAAAACTAATAGTCAATTATAAATTTACTATTTACTATTTTCTAAAAGAATATAACACTAAAAAAAATTAGCTTCAGTAATTTCATATGGACACATAAACTAATCCACAAATAAACACACATATATATGAGAATAACTACATTTTTAAGCTGAAATACTTTTGGTTGGTAACTACTGAGAGATGCATCAAATTTTAGTGAGATAACAGAGAGTGTTCTGCAATTTTCTTAAGTAGTGATGCTTTTCCCGAGTTAAGCAAGCCTAACATTTCTAAACCATTCAATCAACAGGGAGTTCATGCCATAGACTCGTGA

mRNA sequence

ATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGACTAAGTGGCGTGGAATGGATGGGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCTTCTCAAATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTTAGTGATGCTTTTCCCGAGTTAAGCAAGCCTAACATTTCTAAACCATTCAATCAACAGGGAGTTCATGCCATAGACTCGTGA

Coding sequence (CDS)

ATGGCGGCCGGTATCCCGCTCCGTCTAGCCGGAAAATCTCCCCGGCGACGAGGAGCTACCCGGCGTCAACGTGTTCATCCCCACAGTGGATCCGGCGAAAGAGCCGACGGTGGAGGTGATGAACACCGTGTTGTCGTCTCTGGCTCTGGAGTATCCAGCGGAGAAGGTGGGCATCTACCTGTCGGACGACGGCGGGTCTCCGGTGACGCTTTATGCATTAAAAGAAACTTTTCTACAATATCAGAAAGAATGATATCTATGAAAACCAATCCCGGTCTGCCTTCAAGACTAAGTGGCGTGGAATGGATGGGCCCAGTCGACATGAAAGACGCCATGGTTCAGATGCTAAAATGGAGCTCAGAGTTGTTCCAAGTTGCTTTATCTAAGTATAGTCTTCTCAAATACGGTGTCTCAAGGATGTCAATTCTCCAAAGCATGGCCTACGCCTACTTCACATTCTCCTCCCTGCCTTCAGTTGCTTTCGTCTTTAGTGATGCTTTTCCCGAGTTAAGCAAGCCTAACATTTCTAAACCATTCAATCAACAGGGAGTTCATGCCATAGACTCGTGA

Protein sequence

MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLPVGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMGPVDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSDAFPELSKPNISKPFNQQGVHAIDS

Homology

[Close]

BLAST of Csor.00g236590 vs. NCBI nr
Match: KAG6593854.1 (hypothetical protein SDJN03_13330, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365 bits (936), Expect = 5.96e-127
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60
           MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP
Sbjct: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60

Query: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMGPVDMKDAMVQMLKWSS 120
           VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMGPVDMKDAMVQMLKWSS
Sbjct: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMGPVDMKDAMVQMLKWSS 120

Query: 121 ELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSDAFPELSKPNISKPFN 180
           ELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSDAFPELSKPNISKPFN
Sbjct: 121 ELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSDAFPELSKPNISKPFN 180

Query: 181 QQGVHAIDS 189
           QQGVHAIDS
Sbjct: 181 QQGVHAIDS 189

[Close]

BLAST of Csor.00g236590 vs. NCBI nr
Match: KAG7026186.1 (hypothetical protein SDJN02_12685 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205 bits (522), Expect = 4.06e-65
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60
           MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP
Sbjct: 1   MAAGIPLRLAGKSPRRRGATRRQRVHPHSGSGERADGGGDEHRVVVSGSGVSSGEGGHLP 60

Query: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 104
           VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG
Sbjct: 61  VGRRRVSGDALCIKRNFSTISERMISMKTNPGLPSRLSGVEWMG 104

[Close]

BLAST of Csor.00g236590 vs. NCBI nr
Match: XP_038876182.1 (cellulose synthase-like protein G1 isoform X2 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 4.59e-18
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 105 PVDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFS 164
           PVDMKDA++QMLKWSSELFQV  SKYS L YG+SRMSILQSM+YAYF FSSL SVAFV  
Sbjct: 471 PVDMKDAIIQMLKWSSELFQVGFSKYSPLIYGISRMSILQSMSYAYFAFSSLLSVAFVLY 530

Query: 165 DAFPE 169
              P+
Sbjct: 531 GVIPQ 535

[Close]

BLAST of Csor.00g236590 vs. NCBI nr
Match: XP_038876181.1 (cellulose synthase-like protein G1 isoform X1 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 4.60e-18
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 105 PVDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFS 164
           PVDMKDA++QMLKWSSELFQV  SKYS L YG+SRMSILQSM+YAYF FSSL SVAFV  
Sbjct: 471 PVDMKDAIIQMLKWSSELFQVGFSKYSPLIYGISRMSILQSMSYAYFAFSSLLSVAFVLY 530

Query: 165 DAFPE 169
              P+
Sbjct: 531 GVIPQ 535

[Close]

BLAST of Csor.00g236590 vs. NCBI nr
Match: KAF3955668.1 (hypothetical protein CMV_019135 [Castanea mollissima])

HSP 1 Score: 80.9 bits (198), Expect = 6.19e-14
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 106 VDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSD 165
           +DMKD MVQ++KWSS L QV LSK+S L YGVSRMS+LQSM Y YFTFSSL SVA +   
Sbjct: 419 IDMKDGMVQLMKWSSNLVQVGLSKFSPLTYGVSRMSVLQSMCYGYFTFSSLLSVALLLYG 478

Query: 166 AFPEL 170
             P++
Sbjct: 479 TVPQV 483

[Close]

BLAST of Csor.00g236590 vs. ExPASy TrEMBL
Match: A0A2N9GPE3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29225 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.61e-15
Identity = 43/65 (66.15%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 106 VDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSD 165
           +DMKD MVQM+KWSS LFQV LSK+S L+YGVSRMSILQSM Y YFTFS L S+A +   
Sbjct: 523 IDMKDGMVQMMKWSSNLFQVGLSKFSPLRYGVSRMSILQSMCYGYFTFSPLLSIAVLLYG 582

Query: 166 AFPEL 170
             P++
Sbjct: 583 TVPQV 587

[Close]

BLAST of Csor.00g236590 vs. ExPASy TrEMBL
Match: A0A7N2LYQ1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.19e-13
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 106 VDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSD 165
           +DMKD MVQ++KWSS L QV LSK+S L YGVS+MS+LQSM Y YFTFSS  SVA +   
Sbjct: 219 IDMKDGMVQLMKWSSNLVQVGLSKFSPLTYGVSKMSVLQSMCYGYFTFSSFLSVALLLYG 278

Query: 166 AFPEL 170
             P++
Sbjct: 279 TVPQV 283

[Close]

BLAST of Csor.00g236590 vs. ExPASy TrEMBL
Match: A0A6P6WRQ2 (cellulose synthase-like protein G1 OS=Coffea arabica OX=13443 GN=LOC113735294 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.62e-13
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 106 VDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSD 165
           +DMKDAMVQ++KW+S L QV LSKYS L YG+S MSILQSM YAYFTFS   S+A +   
Sbjct: 474 IDMKDAMVQLMKWASGLVQVGLSKYSPLAYGISNMSILQSMCYAYFTFSHFFSIACILYG 533

Query: 166 AFPEL 170
             P+L
Sbjct: 534 IVPQL 538

[Close]

BLAST of Csor.00g236590 vs. ExPASy TrEMBL
Match: A0A5C7IUP2 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000831 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.62e-13
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 106 VDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSD 165
           +DMKDAMVQ++KW+SEL +V LSK+S L YGVSRMSILQSM Y YFT   L SVA +   
Sbjct: 482 IDMKDAMVQLMKWNSELIKVGLSKFSPLTYGVSRMSILQSMCYGYFTLQPLLSVALLLYS 541

Query: 166 AFPELSK-------PNISKPF 179
             P+L         P +S P+
Sbjct: 542 IVPQLCLINGTALYPKVSSPW 562

[Close]

BLAST of Csor.00g236590 vs. ExPASy TrEMBL
Match: A0A4S4EW47 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_003106 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.74e-13
Identity = 42/65 (64.62%), Postives = 48/65 (73.85%), Query Frame = 0


Query: 106 VDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTFSSLPSVAFVFSD 165
           +DMKDAMVQ  KWSS L QV LSK+S L YG+SRMSILQSM Y YFTF S  S+AF+   
Sbjct: 416 IDMKDAMVQQRKWSSGLVQVGLSKFSPLTYGLSRMSILQSMCYGYFTFVSFHSLAFLLYA 475

Query: 166 AFPEL 170
             P+L
Sbjct: 476 TIPQL 480

[Close]

BLAST of Csor.00g236590 vs. TAIR 10
Match: AT4G24000.1 (cellulose synthase like G2 )

HSP 1 Score: 43.5 bits (101), Expect = 2.2e-04
Identity = 26/81 (32.10%), Postives = 41/81 (50.62%), Query Frame = 0


Query: 105 PVDMKDAMVQMLKWSSELFQVALSKYSLLKYGVSRMSILQSMAYAYFTF----------- 164
           P  + D + Q ++WS  L +VA S+Y+ L YG+  +S+L S+ Y ++ F           
Sbjct: 466 PKCLTDVIGQQIRWSVGLLEVAFSRYNPLTYGIKPLSLLMSLGYCHYAFWPFWCIPLVVY 525

Query: 165 SSLPSVAFVFS-DAFPELSKP 174
             LP VA +     FP+ S P
Sbjct: 526 GILPQVALIHGVSVFPKASDP 546

The following BLAST results are available for this feature:

BLAST of Csor.00g236590 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g236590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593854.1	5.96e-127	100.00	hypothetical protein SDJN03_13330, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7026186.1	4.06e-65	100.00	hypothetical protein SDJN02_12685 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038876182.1	4.59e-18	75.38	cellulose synthase-like protein G1 isoform X2 [Benincasa hispida]	[more]
XP_038876181.1	4.60e-18	75.38	cellulose synthase-like protein G1 isoform X1 [Benincasa hispida]	[more]
KAF3955668.1	6.19e-14	64.62	hypothetical protein CMV_019135 [Castanea mollissima]	[more]

BLAST of Csor.00g236590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9GPE3	3.61e-15	66.15	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29225 PE=4 SV=1	[more]
A0A7N2LYQ1	2.19e-13	61.54	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6P6WRQ2	2.62e-13	63.08	cellulose synthase-like protein G1 OS=Coffea arabica OX=13443 GN=LOC113735294 PE...	[more]
A0A5C7IUP2	2.62e-13	54.32	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_000831 PE=4 SV=1	[more]
A0A4S4EW47	4.74e-13	64.62	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0031...	[more]

BLAST of Csor.00g236590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24000.1	2.2e-04	32.10	cellulose synthase like G2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41
None	No IPR available	PANTHER	PTHR13301:SF170	CELLULOSE SYNTHASE-LIKE PROTEIN	coord: 105..170
None	No IPR available	PANTHER	PTHR13301	X-BOX TRANSCRIPTION FACTOR-RELATED	coord: 105..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g236590.m01	Csor.00g236590.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0009833	plant-type primary cell wall biogenesis
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051753	mannan synthase activity