Csor.00g236220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g236220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionprotein PROTON GRADIENT REGULATION 5, chloroplastic-like
LocationCsor_Chr08: 6952732 .. 6953361 (-)
RNA-Seq ExpressionCsor.00g236220
SyntenyCsor.00g236220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCACTTCCATTTCTGCAACTGGATTGTCCTGTTCTTCTTCTTTCCTTGGAGGATGGGGTTCTTCCGTGGCCGGAGAGGACTACGCGCTGCTGGCGGTGAAGCCGGCTGCAGTGCAAGTGGGCATGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTCAATGAGGGTAAAGGGGTTTTTGCGCCATTGGTTGTAGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGAGGCAAAGCAATTGCCTTGCATTCTCAGGTAATGCATCTTTTTCCCCCTTAATCTCTCTCACTTAGATCATTTCAAACTTTAAATCAAGGGGAAAAAAAGGTCCAAAATTTTCAATAACCAAGAACCAAATAATCATCAGATTCGACACATCTAGTTTTTCAAACCGTCCTACTTCGATAGTAATGTAACCAAATAATCATCAAACGGACGCATAGACAATTTAGATTCAGATTCAAAACACATCTAGTTTTCCTGAATTTTGTTGTTTCTCAGGTAATCACAGAGTTTTGCAAGTCAATTGGAGCAGATGGAAAACAAAGACAAGGATTAATCAGGCTAGCAAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

mRNA sequence

ATGGCGTCCACTTCCATTTCTGCAACTGGATTGTCCTGTTCTTCTTCTTTCCTTGGAGGATGGGGTTCTTCCGTGGCCGGAGAGGACTACGCGCTGCTGGCGGTGAAGCCGGCTGCAGTGCAAGTGGGCATGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTCAATGAGGGTAAAGGGGTTTTTGCGCCATTGGTTGTAGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGAGGCAAAGCAATTGCCTTGCATTCTCAGGTAATCACAGAGTTTTGCAAGTCAATTGGAGCAGATGGAAAACAAAGACAAGGATTAATCAGGCTAGCAAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

Coding sequence (CDS)

ATGGCGTCCACTTCCATTTCTGCAACTGGATTGTCCTGTTCTTCTTCTTTCCTTGGAGGATGGGGTTCTTCCGTGGCCGGAGAGGACTACGCGCTGCTGGCGGTGAAGCCGGCTGCAGTGCAAGTGGGCATGGGGAAGGCGGTGAGGTTCCGGCCGATGATGAAGAACGTCAATGAGGGTAAAGGGGTTTTTGCGCCATTGGTTGTAGTTACTCGGAATCTCATCGGCAAGAAGCGCTTCAATCAGCTTAGAGGCAAAGCAATTGCCTTGCATTCTCAGGTAATCACAGAGTTTTGCAAGTCAATTGGAGCAGATGGAAAACAAAGACAAGGATTAATCAGGCTAGCAAAGAAGAATGGAGAAAGACTTGGATTCCTTGCCTGA

Protein sequence

MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEGKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNGERLGFLA
Homology
BLAST of Csor.00g236220 vs. ExPASy Swiss-Prot
Match: Q9SL05 (Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR5 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 5.4e-44
Identity = 98/134 (73.13%), Postives = 108/134 (80.60%), Query Frame = 0

Query: 1   MASTSISATGLS---CSSSFLGGWGSSVAGEDYALLAVK----PAAVQVGMGKAVRFRPM 60
           MA+ SISA G +     +SF GGWGSS++GEDY  +  K    P   +V   KA+R  PM
Sbjct: 1   MAAASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSR-KAIRAVPM 60

Query: 61  MKNVNEGKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLI 120
           MKNVNEGKG+FAPLVVVTRNL+GKKRFNQLRGKAIALHSQVITEFCKSIGAD KQRQGLI
Sbjct: 61  MKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLI 120

Query: 121 RLAKKNGERLGFLA 128
           RLAKKNGERLGFLA
Sbjct: 121 RLAKKNGERLGFLA 133

BLAST of Csor.00g236220 vs. NCBI nr
Match: XP_022964453.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >KAG6593817.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026151.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (620), Expect = 8.64e-81
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG
Sbjct: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           ERLGFLA
Sbjct: 121 ERLGFLA 127

BLAST of Csor.00g236220 vs. NCBI nr
Match: XP_023514813.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241 bits (614), Expect = 7.11e-80
Identity = 125/127 (98.43%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MASTSISATGLSCSS+FLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG
Sbjct: 1   MASTSISATGLSCSSTFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           E+LGFLA
Sbjct: 121 EKLGFLA 127

BLAST of Csor.00g236220 vs. NCBI nr
Match: XP_022959256.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >XP_023006090.1 protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita maxima] >KAG6574897.1 Protein PROTON GRADIENT REGULATION 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 233 bits (593), Expect = 1.13e-76
Identity = 120/127 (94.49%), Postives = 124/127 (97.64%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MA+TSISATGL CSSSF+GGWGSSVAGEDYALLA +PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           ERLGFLA
Sbjct: 121 ERLGFLA 127

BLAST of Csor.00g236220 vs. NCBI nr
Match: XP_023547978.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231 bits (589), Expect = 4.62e-76
Identity = 119/127 (93.70%), Postives = 123/127 (96.85%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MA+TSISATGL CSSSF+GGWGSSVAGEDYALLA +PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQ RGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQFRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           ERLGFLA
Sbjct: 121 ERLGFLA 127

BLAST of Csor.00g236220 vs. NCBI nr
Match: XP_023000564.1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 231 bits (589), Expect = 4.77e-76
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALL-AVKPAAVQVGMGKAVRFRPMMKNVNE 60
           MASTSISATGLSCSSSF GGWG SVAGEDYALL AVKPAAVQV MGKAVRFRPMMKNVNE
Sbjct: 1   MASTSISATGLSCSSSFPGGWGFSVAGEDYALLLAVKPAAVQVSMGKAVRFRPMMKNVNE 60

Query: 61  GKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKN 120
           GKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKN
Sbjct: 61  GKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKN 120

Query: 121 GERLGFLA 127
           GERLGFLA
Sbjct: 121 GERLGFLA 128

BLAST of Csor.00g236220 vs. ExPASy TrEMBL
Match: A0A6J1HKV7 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111464474 PE=4 SV=1)

HSP 1 Score: 243 bits (620), Expect = 4.18e-81
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG
Sbjct: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           ERLGFLA
Sbjct: 121 ERLGFLA 127

BLAST of Csor.00g236220 vs. ExPASy TrEMBL
Match: A0A6J1KZ80 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498938 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 5.49e-77
Identity = 120/127 (94.49%), Postives = 124/127 (97.64%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MA+TSISATGL CSSSF+GGWGSSVAGEDYALLA +PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           ERLGFLA
Sbjct: 121 ERLGFLA 127

BLAST of Csor.00g236220 vs. ExPASy TrEMBL
Match: A0A6J1H4C6 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460289 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 5.49e-77
Identity = 120/127 (94.49%), Postives = 124/127 (97.64%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MA+TSISATGL CSSSF+GGWGSSVAGEDYALLA +PAAVQVG GKAVRFRPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFIGGWGSSVAGEDYALLAARPAAVQVGGGKAVRFRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           ERLGFLA
Sbjct: 121 ERLGFLA 127

BLAST of Csor.00g236220 vs. ExPASy TrEMBL
Match: A0A6J1KKC1 (protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494806 PE=4 SV=1)

HSP 1 Score: 231 bits (589), Expect = 2.31e-76
Identity = 124/128 (96.88%), Postives = 124/128 (96.88%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALL-AVKPAAVQVGMGKAVRFRPMMKNVNE 60
           MASTSISATGLSCSSSF GGWG SVAGEDYALL AVKPAAVQV MGKAVRFRPMMKNVNE
Sbjct: 1   MASTSISATGLSCSSSFPGGWGFSVAGEDYALLLAVKPAAVQVSMGKAVRFRPMMKNVNE 60

Query: 61  GKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKN 120
           GKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKN
Sbjct: 61  GKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKN 120

Query: 121 GERLGFLA 127
           GERLGFLA
Sbjct: 121 GERLGFLA 128

BLAST of Csor.00g236220 vs. ExPASy TrEMBL
Match: B0F831 (Proton gradient regulation 5 OS=Cucumis sativus OX=3659 GN=PGR5 PE=4 SV=1)

HSP 1 Score: 218 bits (554), Expect = 4.86e-71
Identity = 113/127 (88.98%), Postives = 116/127 (91.34%), Query Frame = 0

Query: 1   MASTSISATGLSCSSSFLGGWGSSVAGEDYALLAVKPAAVQVGMGKAVRFRPMMKNVNEG 60
           MA+TSISATGL CSSSF GGWGS+VAGEDY  L  K   VQVGMGK VR RPMMKNVNEG
Sbjct: 1   MAATSISATGLCCSSSFFGGWGSTVAGEDYPALLAKQGPVQVGMGKPVRSRPMMKNVNEG 60

Query: 61  KGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120
           KGVFAPLVVVTRN+IGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG
Sbjct: 61  KGVFAPLVVVTRNIIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLIRLAKKNG 120

Query: 121 ERLGFLA 127
           ERLGFLA
Sbjct: 121 ERLGFLA 127

BLAST of Csor.00g236220 vs. TAIR 10
Match: AT2G05620.1 (proton gradient regulation 5 )

HSP 1 Score: 178.3 bits (451), Expect = 3.8e-45
Identity = 98/134 (73.13%), Postives = 108/134 (80.60%), Query Frame = 0

Query: 1   MASTSISATGLS---CSSSFLGGWGSSVAGEDYALLAVK----PAAVQVGMGKAVRFRPM 60
           MA+ SISA G +     +SF GGWGSS++GEDY  +  K    P   +V   KA+R  PM
Sbjct: 1   MAAASISAIGCNQTLIGTSFYGGWGSSISGEDYQTMLSKTVAPPQQARVSR-KAIRAVPM 60

Query: 61  MKNVNEGKGVFAPLVVVTRNLIGKKRFNQLRGKAIALHSQVITEFCKSIGADGKQRQGLI 120
           MKNVNEGKG+FAPLVVVTRNL+GKKRFNQLRGKAIALHSQVITEFCKSIGAD KQRQGLI
Sbjct: 61  MKNVNEGKGLFAPLVVVTRNLVGKKRFNQLRGKAIALHSQVITEFCKSIGADAKQRQGLI 120

Query: 121 RLAKKNGERLGFLA 128
           RLAKKNGERLGFLA
Sbjct: 121 RLAKKNGERLGFLA 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SL055.4e-4473.13Protein PROTON GRADIENT REGULATION 5, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
Match NameE-valueIdentityDescription
XP_022964453.18.64e-81100.00protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >K... [more]
XP_023514813.17.11e-8098.43protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. ... [more]
XP_022959256.11.13e-7694.49protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita moschata] >X... [more]
XP_023547978.14.62e-7693.70protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita pepo subsp. ... [more]
XP_023000564.14.77e-7696.88protein PROTON GRADIENT REGULATION 5, chloroplastic-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1HKV74.18e-81100.00protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata O... [more]
A0A6J1KZ805.49e-7794.49protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=... [more]
A0A6J1H4C65.49e-7794.49protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita moschata O... [more]
A0A6J1KKC12.31e-7696.88protein PROTON GRADIENT REGULATION 5, chloroplastic-like OS=Cucurbita maxima OX=... [more]
B0F8314.86e-7188.98Proton gradient regulation 5 OS=Cucumis sativus OX=3659 GN=PGR5 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G05620.13.8e-4573.13proton gradient regulation 5 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037497Protein PROTON GRADIENT REGULATION 5PANTHERPTHR35709PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTICcoord: 1..127
NoneNo IPR availablePANTHERPTHR35709:SF3PROTON GRADIENT REGULATION 5coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g236220.m01Csor.00g236220.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0009644 response to high light intensity
cellular_component GO:0009507 chloroplast
molecular_function GO:0009055 electron transfer activity