Csor.00g234520 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g234520
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	defensin-like protein 2
Location	Csor_Chr10: 8229113 .. 8229455 (-)
RNA-Seq Expression	Csor.00g234520
Synteny	Csor.00g234520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGACAAAGCTTGAGAAATCTCAAAATTGTGGTGTTCATCTTCCTAGCTCTTACTTCTGGTACTTGATCCTTCATGCTTCTCCATATTGATTTAGATTGACAGATAGTATTGAAAAGAAGGTTTTTGTTTGTATGAATAAGTTTGTGTTACTGTTGCAGGATGGATGGTGGCTCAGACGGAGGGGCGGACATGCTATAAACACAGCGATGCGTTTATAGGACCGTGCATTGAAGAAACATGTGCTGAACTTTGCATTTCTTTTGAGAAGTGGGATGGCGGATTTTGCTCGGGTGATAAATGCACTTGTTCGAAAAAATGTGCTGAGTCCACGCTTTAA

mRNA sequence

ATGGCGGGACAAAGCTTGAGAAATCTCAAAATTGTGGTGTTCATCTTCCTAGCTCTTACTTCTGGATGGATGGTGGCTCAGACGGAGGGGCGGACATGCTATAAACACAGCGATGCGTTTATAGGACCGTGCATTGAAGAAACATGTGCTGAACTTTGCATTTCTTTTGAGAAGTGGGATGGCGGATTTTGCTCGGGTGATAAATGCACTTGTTCGAAAAAATGTGCTGAGTCCACGCTTTAA

Coding sequence (CDS)

ATGGCGGGACAAAGCTTGAGAAATCTCAAAATTGTGGTGTTCATCTTCCTAGCTCTTACTTCTGGATGGATGGTGGCTCAGACGGAGGGGCGGACATGCTATAAACACAGCGATGCGTTTATAGGACCGTGCATTGAAGAAACATGTGCTGAACTTTGCATTTCTTTTGAGAAGTGGGATGGCGGATTTTGCTCGGGTGATAAATGCACTTGTTCGAAAAAATGTGCTGAGTCCACGCTTTAA

Protein sequence

MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWDGGFCSGDKCTCSKKCAESTL

Homology

[Close]

BLAST of Csor.00g234520 vs. ExPASy Swiss-Prot
Match: B3F051 (Defensin Lc-def OS=Lens culinaris subsp. culinaris OX=362247 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.6e-04
Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 14 FIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEE-TCAELCISFEKWDGGFCSGD-KCTC 73
          F+F+ L     +A TE +TC   SD+F GPCI +  C + C   E    G C  D +C C
Sbjct: 11 FLFIVLFVAQEIAVTEAKTCENLSDSFKGPCIPDGNCNKHCKEKEHLLSGRCRDDFRCWC 70

Query: 74 SKKC 76
          ++ C
Sbjct: 71 TRNC 74

[Close]

BLAST of Csor.00g234520 vs. NCBI nr
Match: KAG6590363.1 (Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (440), Expect = 8.03e-55
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSKKCAESTL
Sbjct: 61 GGFCSGDKCTCSKKCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. NCBI nr
Match: XP_022933232.1 (defensin-like protein 2 [Cucurbita moschata] >XP_022933235.1 defensin-like protein 2 [Cucurbita moschata] >XP_022933353.1 defensin-like protein 2 [Cucurbita moschata] >KAG6590360.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031896.1 Defensin-like protein 8 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6590362.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590366.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia] >KAG6590367.1 Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (436), Expect = 3.28e-54
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. NCBI nr
Match: KAG6590359.1 (Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171 bits (432), Expect = 1.34e-53
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          M GQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MTGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. NCBI nr
Match: XP_022961379.1 (defensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 171 bits (432), Expect = 1.34e-53
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          M GQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MGGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. NCBI nr
Match: XP_022933233.1 (defensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 171 bits (432), Expect = 1.34e-53
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCI+ETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIKETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. ExPASy TrEMBL
Match: A0A6J1EZ71 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440132 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 1.59e-54
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. ExPASy TrEMBL
Match: A0A6J1F464 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440135 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 6.47e-54
Identity = 78/80 (97.50%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCI+ETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIKETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. ExPASy TrEMBL
Match: A0A6J1HDV2 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111461967 PE=4 SV=1)

HSP 1 Score: 171 bits (432), Expect = 6.47e-54
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          M GQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MGGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
          GGFCSGDKCTCSK+CAESTL
Sbjct: 61 GGFCSGDKCTCSKQCAESTL 80

[Close]

BLAST of Csor.00g234520 vs. ExPASy TrEMBL
Match: A0A6J1F4H8 (defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440651 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 9.20e-54
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAEST 79
          GGFCSGDKCTCSK+CAEST
Sbjct: 61 GGFCSGDKCTCSKQCAEST 79

[Close]

BLAST of Csor.00g234520 vs. ExPASy TrEMBL
Match: A0A6J1IBG0 (defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 1.22e-49
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MAGQSLRNLKIVVFIFLALTSGWMVAQTEGRTCYKHSDAFIGPCIEETCAELCISFEKWD 60
          MAGQSLRNLKIVVFIFLALTSGWMV QTEGRTCYKHSDAFIGPCI  TCAELCISFEKWD
Sbjct: 1  MAGQSLRNLKIVVFIFLALTSGWMVVQTEGRTCYKHSDAFIGPCIAATCAELCISFEKWD 60

Query: 61 GGFCSGDKCTCSKKCAESTL 80
           GFCSGDKCTC+K+CAES L
Sbjct: 61 DGFCSGDKCTCTKQCAESML 80

The following BLAST results are available for this feature:

BLAST of Csor.00g234520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3F051	2.6e-04	37.50	Defensin Lc-def OS=Lens culinaris subsp. culinaris OX=362247 PE=1 SV=1	[more]

BLAST of Csor.00g234520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6590363.1	8.03e-55	100.00	Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022933232.1	3.28e-54	98.75	defensin-like protein 2 [Cucurbita moschata] >XP_022933235.1 defensin-like prote...	[more]
KAG6590359.1	1.34e-53	97.50	Defensin-like protein 8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022961379.1	1.34e-53	97.50	defensin-like protein 2 [Cucurbita moschata]	[more]
XP_022933233.1	1.34e-53	97.50	defensin-like protein 2 [Cucurbita moschata]	[more]

BLAST of Csor.00g234520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZ71	1.59e-54	98.75	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440132 PE=4 SV=1	[more]
A0A6J1F464	6.47e-54	97.50	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440135 PE=4 SV=1	[more]
A0A6J1HDV2	6.47e-54	97.50	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111461967 PE=4 SV=1	[more]
A0A6J1F4H8	9.20e-54	98.73	defensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111440651 PE=4 SV=1	[more]
A0A6J1IBG0	1.22e-49	91.25	defensin-like protein 5 OS=Cucurbita maxima OX=3661 GN=LOC111473130 PE=4 SV=1	[more]

BLAST of Csor.00g234520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003614	Knottin, scorpion toxin-like	SMART	SM00505	gth_4	coord: 32..75 e-value: 0.0032 score: 26.7
IPR036574	Knottin, scorpion toxin-like superfamily	GENE3D	3.30.30.10		coord: 25..80 e-value: 6.9E-10 score: 40.6
IPR036574	Knottin, scorpion toxin-like superfamily	SUPERFAMILY	57095	Scorpion toxin-like	coord: 31..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g234520.m01	Csor.00g234520.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
biological_process	GO:0006952	defense response
cellular_component	GO:0016021	integral component of membrane