Csor.00g234420 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g234420
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 15274907 .. 15275278 (+)
RNA-Seq Expression	Csor.00g234420
Synteny	Csor.00g234420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGGCTCTGGAGAAGAAGAGGATACCAAAAGCTAGGAAGCGATACTCGCCCTACAAGATCAAGGAGCTTCAGACTTCGGCAACTATGGCATATGAGACGACAAGCTTCAAAGGTGCAGTTGAAAATAGCGTCGCCTTTGAAACTTTTGGCGAAGTTTCACGACGCATATGTTGAGATGATGATGAAGGTAGCAAATAGTGTGGGAAATATATATGCCATTGGAGCTTTTGGCAATGGGAAGAGGATACCAAAACCTCGTAATCAAGTTTCTCTTGCTACTTGTGATGGTGAACATGTTGATGCCAAGTTCGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTAATGGTTTTTGA

mRNA sequence

ATGAGGAGGCTCTGGAGAAGAAGAGGATACCAAAAGCTAGGAAGCGATACTCGCCCTACAAGATCAAGGAGCTTCAGACTTCGGCAACTATGGCATATGAGACGACAAGCTTCAAAGGTGCAGTTGAAAATAGCGTCGCCTTTGAAACTTTTGGCGAAGTTTCACGACGCATATGTTGAGATGATGATGAAGGTAGCAAATAGTGTGGGAAATATATATGCCATTGGAGCTTTTGGCAATGGGAAGAGGATACCAAAACCTCGTAATCAAGTTTCTCTTGCTACTTGTGATGGTGAACATGTTGATGCCAAGTTCGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTAATGGTTTTTGA

Coding sequence (CDS)

ATGAGGAGGCTCTGGAGAAGAAGAGGATACCAAAAGCTAGGAAGCGATACTCGCCCTACAAGATCAAGGAGCTTCAGACTTCGGCAACTATGGCATATGAGACGACAAGCTTCAAAGGTGCAGTTGAAAATAGCGTCGCCTTTGAAACTTTTGGCGAAGTTTCACGACGCATATGTTGAGATGATGATGAAGGTAGCAAATAGTGTGGGAAATATATATGCCATTGGAGCTTTTGGCAATGGGAAGAGGATACCAAAACCTCGTAATCAAGTTTCTCTTGCTACTTGTGATGGTGAACATGTTGATGCCAAGTTCGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTAATGGTTTTTGA

Protein sequence

MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVEMMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLANGF

Homology

[Close]

BLAST of Csor.00g234420 vs. NCBI nr
Match: KAG6601824.1 (hypothetical protein SDJN03_07057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (623), Expect = 2.24e-81
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE
Sbjct: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 120
           MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA
Sbjct: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 120

Query: 121 NGF 123
           NGF
Sbjct: 121 NGF 123

[Close]

BLAST of Csor.00g234420 vs. NCBI nr
Match: XP_022959367.1 (uncharacterized protein LOC111460357 [Cucurbita moschata])

HSP 1 Score: 239 bits (610), Expect = 3.10e-79
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           MRRLWRRRGYQKLGSDTRPTRSRSFRLR+LWHMRRQASKVQLKIASPLKLLAKFHD YVE
Sbjct: 12  MRRLWRRRGYQKLGSDTRPTRSRSFRLRRLWHMRRQASKVQLKIASPLKLLAKFHDTYVE 71

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 120
           MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLA SKNLA
Sbjct: 72  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAPSKNLA 131

Query: 121 NGF 123
           NGF
Sbjct: 132 NGF 134

[Close]

BLAST of Csor.00g234420 vs. NCBI nr
Match: XP_023539255.1 (uncharacterized protein LOC111799925 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232 bits (591), Expect = 2.45e-76
Identity = 117/123 (95.12%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           MRRLWRRRGYQKLGSDTR TRSRSFRLR+LW +RRQASKVQLKI SPLKLLAKFHD YVE
Sbjct: 12  MRRLWRRRGYQKLGSDTRTTRSRSFRLRRLWRLRRQASKVQLKIMSPLKLLAKFHDTYVE 71

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 120
           MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA
Sbjct: 72  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 131

Query: 121 NGF 123
           NGF
Sbjct: 132 NGF 134

[Close]

BLAST of Csor.00g234420 vs. NCBI nr
Match: KAG7016737.1 (hypothetical protein SDJN02_21847, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (456), Expect = 1.05e-55
Identity = 88/119 (73.95%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           ++RLWRRR YQ+LGS T   RSRSFRL +LW MRR+A K++LK+ASPLK+LA+FHDAYV+
Sbjct: 12  LKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRMRRRAPKLRLKMASPLKVLARFHDAYVK 71

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNL 119
           MM +VAN+VGN+YAIG FGNGKRIPKPRNQ+SL +C GE VDAK VLEIYNKLA SKNL
Sbjct: 72  MMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEIYNKLAVSKNL 130

[Close]

BLAST of Csor.00g234420 vs. NCBI nr
Match: KAG6579224.1 (hypothetical protein SDJN03_23672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (450), Expect = 8.61e-55
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           ++RLWRRR YQ+LGS     RSRSFRL +LW MRR+A K++LK+ASPLK+LA+FHDAYV+
Sbjct: 12  LKRLWRRRRYQRLGSGMGAARSRSFRLGRLWRMRRRAPKLRLKMASPLKVLARFHDAYVK 71

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNL 119
           MM +VAN+VGN+YAIG FGNGKRIPKPRNQ+SL +C GE VDAK VLEIYNKLA SKNL
Sbjct: 72  MMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEIYNKLAVSKNL 130

[Close]

BLAST of Csor.00g234420 vs. ExPASy TrEMBL
Match: A0A6J1H4C2 (uncharacterized protein LOC111460357 OS=Cucurbita moschata OX=3662 GN=LOC111460357 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 1.50e-79
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           MRRLWRRRGYQKLGSDTRPTRSRSFRLR+LWHMRRQASKVQLKIASPLKLLAKFHD YVE
Sbjct: 12  MRRLWRRRGYQKLGSDTRPTRSRSFRLRRLWHMRRQASKVQLKIASPLKLLAKFHDTYVE 71

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 120
           MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLA SKNLA
Sbjct: 72  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAPSKNLA 131

Query: 121 NGF 123
           NGF
Sbjct: 132 NGF 134

[Close]

BLAST of Csor.00g234420 vs. ExPASy TrEMBL
Match: A0A6J1DHB4 (uncharacterized protein LOC111020054 OS=Momordica charantia OX=3673 GN=LOC111020054 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 2.33e-54
Identity = 91/126 (72.22%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           +RR WRRR YQ+LGS   PTRSRSFRL +LW MRR A +++ K+ASPLKLLA+FHDAYVE
Sbjct: 12  IRRTWRRRKYQRLGSSNGPTRSRSFRLGRLWRMRRGAPRLRFKMASPLKLLARFHDAYVE 71

Query: 61  MMMKVANSVGNIYAIGAFGNG---KRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASK 120
           MMM+VAN VGN+YAIGAFG G   + IPKP NQVSL +C GE VDAK VLEIYNKLAASK
Sbjct: 72  MMMRVANGVGNMYAIGAFGGGGKRRMIPKPGNQVSLVSCGGEQVDAKLVLEIYNKLAASK 131

Query: 121 NLANGF 123
           NLA  F
Sbjct: 132 NLAAAF 137

[Close]

BLAST of Csor.00g234420 vs. ExPASy TrEMBL
Match: A0A6J1FGC7 (uncharacterized protein LOC111445168 OS=Cucurbita moschata OX=3662 GN=LOC111445168 PE=4 SV=1)

HSP 1 Score: 174 bits (441), Expect = 8.90e-54
Identity = 86/120 (71.67%), Postives = 101/120 (84.17%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           ++RLWRRR YQ+LGS T   RSRSF L +LW MRR+A K++LK+A P K LA+FHDAYV+
Sbjct: 12  LKRLWRRRRYQRLGSGTGAARSRSFHLGRLWRMRRRAPKLRLKMALPFKALARFHDAYVK 71

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 120
           MM +VAN VGN+YAIG FGNGKRIPKPRNQVSL +C GE VDAK VLE+YNKLAASKNL+
Sbjct: 72  MMTRVANKVGNMYAIGGFGNGKRIPKPRNQVSLVSCGGEQVDAKLVLEMYNKLAASKNLS 131

[Close]

BLAST of Csor.00g234420 vs. ExPASy TrEMBL
Match: A0A6J1JZV2 (uncharacterized protein LOC111489358 OS=Cucurbita maxima OX=3661 GN=LOC111489358 PE=4 SV=1)

HSP 1 Score: 172 bits (436), Expect = 5.14e-53
Identity = 84/120 (70.00%), Postives = 102/120 (85.00%), Query Frame = 0


Query: 1   MRRLWRRRGYQKLGSDTRPTRSRSFRLRQLWHMRRQASKVQLKIASPLKLLAKFHDAYVE 60
           ++RLWRRR YQ+LGS T   RSRSFRL +LW +RR+A K++LK+ SP K LA+FHDAYV+
Sbjct: 12  LKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRIRRRAPKLRLKMVSPFKALARFHDAYVK 71

Query: 61  MMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAASKNLA 120
           MMM+VANSVG++YAIG +GNGKRIPKP NQVSL +C GE VD K VLE+YNKLAASKNL+
Sbjct: 72  MMMRVANSVGSMYAIGGYGNGKRIPKPSNQVSLVSCGGEQVDTKLVLEMYNKLAASKNLS 131

[Close]

BLAST of Csor.00g234420 vs. ExPASy TrEMBL
Match: A0A5D3BKB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00020 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 4.63e-45
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 0


Query: 1   MRRLWRRRGYQKL--GSDTRPTRS-RSFRLRQLWHMRRQAS-KVQLKIASPLKLLAKFHD 60
           +RRLWRRR YQ+L  GS+T PTRS RSFR+ ++  MRR+AS K++LK++SPLK++AK HD
Sbjct: 12  LRRLWRRRTYQRLRSGSNTVPTRSLRSFRVGRMMIMRRRASPKLRLKMSSPLKVVAKIHD 71

Query: 61  AYVEMMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEIYNKLAAS 120
           AYVEMMM++ANSVGN+YAIG FGN KRIPKP+NQV L    GE +DAK VLEIYNKLA+S
Sbjct: 72  AYVEMMMRLANSVGNMYAIGGFGNRKRIPKPQNQVPLG---GEQIDAKLVLEIYNKLASS 131

[Close]

BLAST of Csor.00g234420 vs. TAIR 10
Match: AT2G47485.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 4.0e-07
Identity = 47/133 (35.34%), Postives = 63/133 (47.37%), Query Frame = 0


Query: 3   RLWRR-RGYQKL-GSDTRPTRSR---------SFRLRQLWHMRRQASKVQLKIASPLKLL 62
           R WRR RGYQ+L GS  + +  R           R R+ W ++       LK ASP KLL
Sbjct: 4   RYWRRLRGYQRLDGSAKKASSGRRNVKRVKMDPTRKRRFWRIKIVPKLRILKKASPKKLL 63

Query: 63  AKFHDAYVEMMMKVANS--VGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEI 122
               DAYV MM+++ANS  VG+ Y  G +G G  +              +  D K ++EI
Sbjct: 64  TWLRDAYVNMMLRLANSRVVGSSYGYGEYGYGSGLA------------SKEYDEKKLVEI 123

[Close]

BLAST of Csor.00g234420 vs. TAIR 10
Match: AT3G62650.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47485.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-06
Identity = 40/125 (32.00%), Postives = 58/125 (46.40%), Query Frame = 0


Query: 2   RRLWRR-RGYQKLGSDTRPTRSR---------SFRLRQLWHMRRQASKVQLKIASPLKLL 61
           +R WRR RGY+KL   +  T  R           R ++ W ++       LK ASP K L
Sbjct: 6   KRYWRRWRGYEKLDGSSETTSGRRKGKRVKMDPTRKKRFWRIKIVPKLRILKTASPKKFL 65

Query: 62  AKFHDAYVEMMMKVANS--VGNI-YAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLE 114
               D+YV+MMM++ANS  VG+  Y    FG+G+                +  D K ++E
Sbjct: 66  VWLRDSYVKMMMRLANSRVVGSSGYGGSGFGSGQM---------------KEYDEKMLVE 115

[Close]

BLAST of Csor.00g234420 vs. TAIR 10
Match: AT3G62650.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G47485.1); Has 57 Blast hits to 57 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-06
Identity = 40/125 (32.00%), Postives = 58/125 (46.40%), Query Frame = 0


Query: 2   RRLWRR-RGYQKLGSDTRPTRSR---------SFRLRQLWHMRRQASKVQLKIASPLKLL 61
           +R WRR RGY+KL   +  T  R           R ++ W ++       LK ASP K L
Sbjct: 6   KRYWRRWRGYEKLDGSSETTSGRRKGKRVKMDPTRKKRFWRIKIVPKLRILKTASPKKFL 65

Query: 62  AKFHDAYVEMMMKVANS--VGNI-YAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLE 114
               D+YV+MMM++ANS  VG+  Y    FG+G+                +  D K ++E
Sbjct: 66  VWLRDSYVKMMMRLANSRVVGSSGYGGSGFGSGQM---------------KEYDEKMLVE 115

The following BLAST results are available for this feature:

BLAST of Csor.00g234420 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g234420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601824.1	2.24e-81	100.00	hypothetical protein SDJN03_07057, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022959367.1	3.10e-79	97.56	uncharacterized protein LOC111460357 [Cucurbita moschata]	[more]
XP_023539255.1	2.45e-76	95.12	uncharacterized protein LOC111799925 [Cucurbita pepo subsp. pepo]	[more]
KAG7016737.1	1.05e-55	73.95	hypothetical protein SDJN02_21847, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6579224.1	8.61e-55	73.11	hypothetical protein SDJN03_23672, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g234420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4C2	1.50e-79	97.56	uncharacterized protein LOC111460357 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A6J1DHB4	2.33e-54	72.22	uncharacterized protein LOC111020054 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1FGC7	8.90e-54	71.67	uncharacterized protein LOC111445168 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1JZV2	5.14e-53	70.00	uncharacterized protein LOC111489358 OS=Cucurbita maxima OX=3661 GN=LOC111489358...	[more]
A0A5D3BKB9	4.63e-45	68.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Csor.00g234420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47485.1	4.0e-07	35.34	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G62650.2	9.8e-06	32.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G62650.1	9.8e-06	32.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33702:SF2	SUBFAMILY NOT NAMED	coord: 1..121
None	No IPR available	PANTHER	PTHR33702	BNAA09G40010D PROTEIN	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g234420.m01	Csor.00g234420.m01	mRNA