Csor.00g234410 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g234410
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	two-component response regulator ORR26-like
Location	Csor_Chr04: 15290719 .. 15291009 (-)
RNA-Seq Expression	Csor.00g234410
Synteny	Csor.00g234410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGACCACAATTTTCAACATGTTGCTTCAAACTACAATTCAGTTCCATATAGCATCAATAAGACGACTCCTGAGGTAACTTCTTTTCGTGTATTGGATGAAATTCAGTTCCTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGGAATTTAGTGGCACATCAGAAGGGATTCAGTTGATGTCAAAAAACATTGATTTACCTGATTCAACCAACTTGGACAATATTGGTGTAAATTTTGGAAATGAAGGAAGCCAACGACAATTAGCAAAAATATGA

mRNA sequence

ATGCTTGACCACAATTTTCAACATGTTGCTTCAAACTACAATTCAGTTCCATATAGCATCAATAAGACGACTCCTGAGGTAACTTCTTTTCGTGTATTGGATGAAATTCAGTTCCTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGGAATTTAGTGGCACATCAGAAGGGATTCAGTTGATGTCAAAAAACATTGATTTACCTGATTCAACCAACTTGGACAATATTGGTGTAAATTTTGGAAATGAAGGAAGCCAACGACAATTAGCAAAAATATGA

Coding sequence (CDS)

ATGCTTGACCACAATTTTCAACATGTTGCTTCAAACTACAATTCAGTTCCATATAGCATCAATAAGACGACTCCTGAGGTAACTTCTTTTCGTGTATTGGATGAAATTCAGTTCCTAGATATACATCAAGCTGATGTAGCTCAGCAGCTAGAAGCAATGGAATTTAGTGGCACATCAGAAGGGATTCAGTTGATGTCAAAAAACATTGATTTACCTGATTCAACCAACTTGGACAATATTGGTGTAAATTTTGGAAATGAAGGAAGCCAACGACAATTAGCAAAAATATGA

Protein sequence

MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSEGIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAKI

Homology

[Close]

BLAST of Csor.00g234410 vs. NCBI nr
Match: KAG6601825.1 (hypothetical protein SDJN03_07058, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 191 bits (486), Expect = 2.44e-61
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
          MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE
Sbjct: 1  MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60

Query: 61 GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAKI 96
          GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAKI
Sbjct: 61 GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAKI 96

[Close]

BLAST of Csor.00g234410 vs. NCBI nr
Match: KAG7032530.1 (hypothetical protein SDJN02_06579 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167 bits (423), Expect = 9.45e-50
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           MLDHNFQHVASNYNSVPYSINKTTP+VTS RV DEIQF DIHQADVAQQLEAMEFSGTSE
Sbjct: 91  MLDHNFQHVASNYNSVPYSINKTTPKVTSSRVFDEIQFSDIHQADVAQQLEAMEFSGTSE 150

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LPDSTNLDN+  NF NEGSQ+QLA+
Sbjct: 151 GIQLMSKNIALPDSTNLDNVAANFVNEGSQQQLAE 185

[Close]

BLAST of Csor.00g234410 vs. NCBI nr
Match: XP_022990810.1 (two-component response regulator ORR26-like [Cucurbita maxima])

HSP 1 Score: 166 bits (420), Expect = 2.11e-46
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           MLDHNFQHVASNYNSVPYSINKTTPEVTS+R  DEIQF D+HQ DVAQQLEAMEF GTSE
Sbjct: 397 MLDHNFQHVASNYNSVPYSINKTTPEVTSYRAFDEIQFPDMHQVDVAQQLEAMEFIGTSE 456

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LPDSTNLDNI  NFGNEGSQ+Q A+
Sbjct: 457 GIQLMSKNIALPDSTNLDNIAANFGNEGSQQQFAE 491

[Close]

BLAST of Csor.00g234410 vs. NCBI nr
Match: XP_023538693.1 (uncharacterized protein LOC111799539 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166 bits (420), Expect = 2.69e-46
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           M DHNFQHVASNYNSVPYSINKTTPEVTS+R  DEIQF DIHQ DVAQQLEAMEF GTSE
Sbjct: 414 MFDHNFQHVASNYNSVPYSINKTTPEVTSYRAFDEIQFPDIHQVDVAQQLEAMEFCGTSE 473

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LPDSTNLDNI  NFGNEGSQ+Q A+
Sbjct: 474 GIQLMSKNIALPDSTNLDNIAANFGNEGSQQQFAE 508

[Close]

BLAST of Csor.00g234410 vs. NCBI nr
Match: XP_023538685.1 (two-component response regulator ORR26-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166 bits (420), Expect = 3.07e-46
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           M DHNFQHVASNYNSVPYSINKTTPEVTS+R  DEIQF DIHQ DVAQQLEAMEF GTSE
Sbjct: 424 MFDHNFQHVASNYNSVPYSINKTTPEVTSYRAFDEIQFPDIHQVDVAQQLEAMEFCGTSE 483

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LPDSTNLDNI  NFGNEGSQ+Q A+
Sbjct: 484 GIQLMSKNIALPDSTNLDNIAANFGNEGSQQQFAE 518

[Close]

BLAST of Csor.00g234410 vs. ExPASy TrEMBL
Match: A0A6J1JR42 (two-component response regulator ORR26-like OS=Cucurbita maxima OX=3661 GN=LOC111487593 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 1.02e-46
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           MLDHNFQHVASNYNSVPYSINKTTPEVTS+R  DEIQF D+HQ DVAQQLEAMEF GTSE
Sbjct: 397 MLDHNFQHVASNYNSVPYSINKTTPEVTSYRAFDEIQFPDMHQVDVAQQLEAMEFIGTSE 456

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LPDSTNLDNI  NFGNEGSQ+Q A+
Sbjct: 457 GIQLMSKNIALPDSTNLDNIAANFGNEGSQQQFAE 491

[Close]

BLAST of Csor.00g234410 vs. ExPASy TrEMBL
Match: A0A6J1GKU9 (putative two-component response regulator-like APRR6 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111455231 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 2.41e-44
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           MLDHNFQHVASNYNSVPY+INKTTPEVTS+R  DEIQF DIHQ D AQQLEAMEF GTSE
Sbjct: 406 MLDHNFQHVASNYNSVPYNINKTTPEVTSYRAFDEIQFPDIHQVDAAQQLEAMEFCGTSE 465

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LP STNLDNI  NFGNEG Q+Q A+
Sbjct: 466 GIQLMSKNIALPGSTNLDNIAANFGNEGIQQQFAE 500

[Close]

BLAST of Csor.00g234410 vs. ExPASy TrEMBL
Match: A0A6J1GL19 (putative two-component response regulator-like APRR6 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455231 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 2.74e-44
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           MLDHNFQHVASNYNSVPY+INKTTPEVTS+R  DEIQF DIHQ D AQQLEAMEF GTSE
Sbjct: 416 MLDHNFQHVASNYNSVPYNINKTTPEVTSYRAFDEIQFPDIHQVDAAQQLEAMEFCGTSE 475

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LP STNLDNI  NFGNEG Q+Q A+
Sbjct: 476 GIQLMSKNIALPGSTNLDNIAANFGNEGIQQQFAE 510

[Close]

BLAST of Csor.00g234410 vs. ExPASy TrEMBL
Match: A0A6J1GM46 (putative two-component response regulator-like APRR6 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455231 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 2.84e-44
Identity = 79/95 (83.16%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQLEAMEFSGTSE 60
           MLDHNFQHVASNYNSVPY+INKTTPEVTS+R  DEIQF DIHQ D AQQLEAMEF GTSE
Sbjct: 419 MLDHNFQHVASNYNSVPYNINKTTPEVTSYRAFDEIQFPDIHQVDAAQQLEAMEFCGTSE 478

Query: 61  GIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAK 95
           GIQLMSKNI LP STNLDNI  NFGNEG Q+Q A+
Sbjct: 479 GIQLMSKNIALPGSTNLDNIAANFGNEGIQQQFAE 513

[Close]

BLAST of Csor.00g234410 vs. ExPASy TrEMBL
Match: A0A6J1I817 (putative two-component response regulator-like APRR6 OS=Cucurbita maxima OX=3661 GN=LOC111470486 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 8.74e-28
Identity = 65/104 (62.50%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MLDHNFQHVASNYNSVPYSINKTTPEVTSFRVLDEIQFLDIHQADVAQQL--------EA 60
           ML  NFQ V SNYNSVPY IN+TTP+VTS  V DE QF D H   V Q L        EA
Sbjct: 331 MLGQNFQPVDSNYNSVPYIINQTTPKVTSSCVFDETQFSDNHLDVVQQDLTTFKIENQEA 390

Query: 61  MEFSGTSEGIQLMSKNIDLPDSTNLDNIGVNFGNEGSQRQLAKI 96
           M  +GTSEGIQLMS N+  PDSTNLDNI  NFGNEGSQ+Q A+ 
Sbjct: 391 MGCNGTSEGIQLMSNNMAFPDSTNLDNIAANFGNEGSQQQSAEF 434

The following BLAST results are available for this feature:

BLAST of Csor.00g234410 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g234410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601825.1	2.44e-61	100.00	hypothetical protein SDJN03_07058, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7032530.1	9.45e-50	88.42	hypothetical protein SDJN02_06579 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022990810.1	2.11e-46	86.32	two-component response regulator ORR26-like [Cucurbita maxima]	[more]
XP_023538693.1	2.69e-46	86.32	uncharacterized protein LOC111799539 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023538685.1	3.07e-46	86.32	two-component response regulator ORR26-like isoform X2 [Cucurbita pepo subsp. pe...	[more]

BLAST of Csor.00g234410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JR42	1.02e-46	86.32	two-component response regulator ORR26-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GKU9	2.41e-44	83.16	putative two-component response regulator-like APRR6 isoform X3 OS=Cucurbita mos...	[more]
A0A6J1GL19	2.74e-44	83.16	putative two-component response regulator-like APRR6 isoform X2 OS=Cucurbita mos...	[more]
A0A6J1GM46	2.84e-44	83.16	putative two-component response regulator-like APRR6 isoform X1 OS=Cucurbita mos...	[more]
A0A6J1I817	8.74e-28	62.50	putative two-component response regulator-like APRR6 OS=Cucurbita maxima OX=3661...	[more]

BLAST of Csor.00g234410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g234410.m01	Csor.00g234410.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016301	kinase activity