Csor.00g234390 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g234390
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 15512308 .. 15512583 (+)
RNA-Seq ExpressionCsor.00g234390
SyntenyCsor.00g234390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAAGCCAACCATCGAGGCAGTCCTTGTGGAAGATGTGGTTGCAAGGGAGACGGCGGACGGGGTTACCAGCGGAGAGGGGACAGAGGCAGACGACACAGTCGGAGGCGGCGGAATCGGCGTAGTAGCGGTGGGAGAGAAGGCGATTGAGATGAAGATGTTGGTGGAGAGGGGAAATATCGGAATCGGGAGACGGAGCGGTGGAGGAGAGGAAAGAACGGCGGAGGAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGTGA

mRNA sequence

ATGATGAAGCCAACCATCGAGGCAGTCCTTGTGGAAGATGTGGTTGCAAGGGAGACGGCGGACGGGGTTACCAGCGGAGAGGGGACAGAGGCAGACGACACAGTCGGAGGCGGCGGAATCGGCGTAGTAGCGGTGGGAGAGAAGGCGATTGAGATGAAGATGTTGGTGGAGAGGGGAAATATCGGAATCGGGAGACGGAGCGGTGGAGGAGAGGAAAGAACGGCGGAGGAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGTGA

Coding sequence (CDS)

ATGATGAAGCCAACCATCGAGGCAGTCCTTGTGGAAGATGTGGTTGCAAGGGAGACGGCGGACGGGGTTACCAGCGGAGAGGGGACAGAGGCAGACGACACAGTCGGAGGCGGCGGAATCGGCGTAGTAGCGGTGGGAGAGAAGGCGATTGAGATGAAGATGTTGGTGGAGAGGGGAAATATCGGAATCGGGAGACGGAGCGGTGGAGGAGAGGAAAGAACGGCGGAGGAGGGAGAGGAAATTGGCGAGGAGAGAGAGGAAGAAGAGAGGGAGTGA

Protein sequence

MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGVVAVGEKAIEMKMLVERGNIGIGRRSGGGEERTAEEGEEIGEEREEEERE
Homology
BLAST of Csor.00g234390 vs. NCBI nr
Match: KAG6601827.1 (hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (405), Expect = 3.89e-49
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGVVAVGEKAIEMKMLVERGN 60
          MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGVVAVGEKAIEMKMLVERGN
Sbjct: 1  MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGVVAVGEKAIEMKMLVERGN 60

Query: 61 IGIGRRSGGGEERTAEEGEEIGEEREEEERE 91
          IGIGRRSGGGEERTAEEGEEIGEEREEEERE
Sbjct: 61 IGIGRRSGGGEERTAEEGEEIGEEREEEERE 91

BLAST of Csor.00g234390 vs. NCBI nr
Match: KAG6579228.1 (hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 3.11e-21
Identity = 62/95 (65.26%), Postives = 73/95 (76.84%), Query Frame = 0

Query: 1  MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGGGIGV-VAVGEKAIEMKMLVERG 60
          MM+  +EAVLVEDV AR+ AD V  GE  E DD VGGG +GV VAV E+AIE+K++ ERG
Sbjct: 1  MMEAGVEAVLVEDVAARKAADEVAGGERGETDDAVGGGIVGVRVAVREEAIEVKVVGERG 60

Query: 61 NIG---IGRRSGGGEERTAEEGEEIGEEREEEERE 91
          NIG   +GRR  GG E+ AE+GEEIGEEREEEERE
Sbjct: 61 NIGEAVVGRRRSGG-EKGAEKGEEIGEEREEEERE 94

BLAST of Csor.00g234390 vs. NCBI nr
Match: KGN51526.1 (hypothetical protein Csa_008164 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.61e-16
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 1   MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGG----GIGVVAVGEKAIEMKMLV 60
           M+KP +EAV +E+V A ETAD VT  E  E DD +GGG    G+GV  VGEKAIEM+M+ 
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGV-GVGEKAIEMEMVG 90

Query: 61  ERGNIGIGRRSGGGEERTAEEGEEIGEEREEEERE 91
           +RG I      GGGEE  AEE EEIG+EREEEERE
Sbjct: 91  KRGEIRTV--VGGGEEGGAEEREEIGKEREEEERE 122

BLAST of Csor.00g234390 vs. ExPASy TrEMBL
Match: A0A0A0KUZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.80e-17
Identity = 57/95 (60.00%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 1   MMKPTIEAVLVEDVVARETADGVTSGEGTEADDTVGGG----GIGVVAVGEKAIEMKMLV 60
           M+KP +EAV +E+V A ETAD VT  E  E DD +GGG    G+GV  VGEKAIEM+M+ 
Sbjct: 31  MVKPAVEAVFMEEVAAGETADEVTGAERGETDDAIGGGVGVVGVGV-GVGEKAIEMEMVG 90

Query: 61  ERGNIGIGRRSGGGEERTAEEGEEIGEEREEEERE 91
           +RG I      GGGEE  AEE EEIG+EREEEERE
Sbjct: 91  KRGEIRTV--VGGGEEGGAEEREEIGKEREEEERE 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6601827.13.89e-49100.00hypothetical protein SDJN03_07060, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579228.13.11e-2165.26hypothetical protein SDJN03_23676, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN51526.11.61e-1660.00hypothetical protein Csa_008164 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A0A0KUZ67.80e-1760.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576680 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g234390.m01Csor.00g234390.m01mRNA