Csor.00g233780 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g233780
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionpentatricopeptide repeat-containing protein At4g38150-like
LocationCsor_Chr11: 13615654 .. 13616037 (-)
RNA-Seq ExpressionCsor.00g233780
SyntenyCsor.00g233780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCGTTGCAGTTGCAATTTCAATATCGCTTTCGAGTTTCAAAGATTTTGTTTTCAACAATTTGGAATTGGGAAAGAGAATCTCCTCTGCTCCACAATCCATTACGAACGCCGGATTTCTCGCTTTCGCCGGTGCAATCTCGCTGTTTCAGCTCTAATTCCATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCAGGAAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGTTTCTCGGCAAAGGAGTGAGTCTTTGTCTCAGAAAGGATTTTAG

mRNA sequence

ATGGGAGCGTTGCAGTTGCAATTTCAATATCGCTTTCGAGTTTCAAAGATTTTGTTTTCAACAATTTGGAATTGGGAAAGAGAATCTCCTCTGCTCCACAATCCATTACGAACGCCGGATTTCTCGCTTTCGCCGGTGCAATCTCGCTGTTTCAGCTCTAATTCCATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCAGGAAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGTTTCTCGGCAAAGGAGTGAGTCTTTGTCTCAGAAAGGATTTTAG

Coding sequence (CDS)

ATGGGAGCGTTGCAGTTGCAATTTCAATATCGCTTTCGAGTTTCAAAGATTTTGTTTTCAACAATTTGGAATTGGGAAAGAGAATCTCCTCTGCTCCACAATCCATTACGAACGCCGGATTTCTCGCTTTCGCCGGTGCAATCTCGCTGTTTCAGCTCTAATTCCATGGATGACGATTGCGCCTTCTCAAAGTCTGAGCCGAGAAGCAGCTCACCGCACCGGCGTTCTCCTCCGGATCCACGAGAAGCTCGTCGAGTTCCGAAATTCACCAGGAAAGTATCTGCTTCTTACCCTGAGGATAATTGGAACCAACGCGTTAATGAACATTCTGAAGGGTCGGTTTCTCGGCAAAGGAGTGAGTCTTTGTCTCAGAAAGGATTTTAG

Protein sequence

MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDCAFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGSVSRQRSESLSQKGF
Homology
BLAST of Csor.00g233780 vs. NCBI nr
Match: KAG6589097.1 (hypothetical protein SDJN03_17662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 250 bits (638), Expect = 1.55e-83
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC
Sbjct: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGSVSRQRSE 120
           AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGSVSRQRSE
Sbjct: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGSVSRQRSE 120

Query: 121 SLSQKGF 127
           SLSQKGF
Sbjct: 121 SLSQKGF 127

BLAST of Csor.00g233780 vs. NCBI nr
Match: XP_022969144.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >XP_022969146.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima])

HSP 1 Score: 179 bits (455), Expect = 1.25e-52
Identity = 101/136 (74.26%), Postives = 108/136 (79.41%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           MGALQ+Q Q R RVSKILFSTI NWER  PLLH+PLRTPD SLSPV+SRCFSSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILFSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF  +VSA YPEDN NQR N H EGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHWEGSESRFANE 120

Query: 121 --VSRQRSESLSQKGF 127
             +SR+RSESLSQK F
Sbjct: 121 GPMSRRRSESLSQKDF 136

BLAST of Csor.00g233780 vs. NCBI nr
Match: KAG7011839.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178 bits (452), Expect = 3.53e-52
Identity = 101/136 (74.26%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           MGALQ+Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRCFSSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS------- 120
            FSKSEPRSS P RRSPPDPREARRVPKF  +VSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSKSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 --VSRQRSESLSQKGF 127
             +SR R+ESLSQK F
Sbjct: 121 GPMSRPRNESLSQKDF 136

BLAST of Csor.00g233780 vs. NCBI nr
Match: XP_022952706.1 (pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] >XP_022952707.1 pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata])

HSP 1 Score: 177 bits (449), Expect = 9.93e-52
Identity = 100/136 (73.53%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           MGALQ+Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRCFSSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF  +VSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120

Query: 121 --VSRQRSESLSQKGF 127
             +SR R+ESLSQK F
Sbjct: 121 GPMSRPRNESLSQKDF 136

BLAST of Csor.00g233780 vs. NCBI nr
Match: KAG6572199.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (449), Expect = 1.43e-51
Identity = 100/136 (73.53%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           MGALQ+Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRCFSSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF  +VSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFANE 120

Query: 121 --VSRQRSESLSQKGF 127
             +SR R+ESLSQK F
Sbjct: 121 GPMSRPRNESLSQKDF 136

BLAST of Csor.00g233780 vs. ExPASy TrEMBL
Match: A0A6J1I1Q2 (pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita maxima OX=3661 GN=LOC111468227 PE=4 SV=1)

HSP 1 Score: 179 bits (455), Expect = 6.07e-53
Identity = 101/136 (74.26%), Postives = 108/136 (79.41%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           MGALQ+Q Q R RVSKILFSTI NWER  PLLH+PLRTPD SLSPV+SRCFSSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILFSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF  +VSA YPEDN NQR N H EGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHWEGSESRFANE 120

Query: 121 --VSRQRSESLSQKGF 127
             +SR+RSESLSQK F
Sbjct: 121 GPMSRRRSESLSQKDF 136

BLAST of Csor.00g233780 vs. ExPASy TrEMBL
Match: A0A6J1GKZ0 (pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita moschata OX=3662 GN=LOC111455321 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 4.81e-52
Identity = 100/136 (73.53%), Postives = 107/136 (78.68%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           MGALQ+Q Q R RVSKIL STI NWER  PLLH+PLRTPD SLSPV+SRCFSSNSMDDD 
Sbjct: 1   MGALQMQLQSRLRVSKILSSTIRNWERGFPLLHDPLRTPDLSLSPVESRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS------- 120
            FS+SEPRSS P RRSPPDPREARRVPKF  +VSA YPEDN NQR N HSEGS       
Sbjct: 61  NFSRSEPRSSPPQRRSPPDPREARRVPKFAGEVSAPYPEDNRNQRFNRHSEGSSSRFAND 120

Query: 121 --VSRQRSESLSQKGF 127
             +SR R+ESLSQK F
Sbjct: 121 GPMSRPRNESLSQKDF 136

BLAST of Csor.00g233780 vs. ExPASy TrEMBL
Match: A0A6J1C2J3 (pentatricopeptide repeat-containing protein At4g38150 OS=Momordica charantia OX=3673 GN=LOC111007869 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 3.98e-44
Identity = 90/136 (66.18%), Postives = 102/136 (75.00%), Query Frame = 0

Query: 1   MGALQLQFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDC 60
           M ALQLQ Q R R+SKI+ S+IW  ER+ PLLH+ LRT DFSL P QSRCFSSNSMDDD 
Sbjct: 1   MAALQLQLQSRLRMSKIVSSSIWKCERQLPLLHDSLRTQDFSLLPTQSRCFSSNSMDDDW 60

Query: 61  AFSKSEPRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS------- 120
           A S SEPRS+ PHRRSPPD RE RRVPKF+  VSASYP D+ N+R+N+ SEGS       
Sbjct: 61  AISNSEPRSNPPHRRSPPDSREPRRVPKFSDGVSASYPGDDRNRRINKRSEGSSFRFDNE 120

Query: 121 --VSRQRSESLSQKGF 127
             +SRQRSE LSQK F
Sbjct: 121 GGISRQRSEFLSQKDF 136

BLAST of Csor.00g233780 vs. ExPASy TrEMBL
Match: A0A1S3CFW0 (pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN=LOC103500481 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 3.78e-36
Identity = 86/130 (66.15%), Postives = 94/130 (72.31%), Query Frame = 0

Query: 7   QFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDCAFSKSE 66
           QFQ R +VSKIL S+I  WE + PLLHNPLRTPDFSLSP  SR FSSNSMDDD AFS+SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 67  PRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS---------VSRQ 126
           PR++ P RR PPD REARRVP+    V+ SY  DN NQR N HSEGS          SRQ
Sbjct: 65  PRNTPPQRRFPPDHREARRVPRGG--VTDSY--DNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

BLAST of Csor.00g233780 vs. ExPASy TrEMBL
Match: A0A5D3D5J5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00030 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 3.78e-36
Identity = 86/130 (66.15%), Postives = 94/130 (72.31%), Query Frame = 0

Query: 7   QFQYRFRVSKILFSTIWNWERESPLLHNPLRTPDFSLSPVQSRCFSSNSMDDDCAFSKSE 66
           QFQ R +VSKIL S+I  WE + PLLHNPLRTPDFSLSP  SR FSSNSMDDD AFS+SE
Sbjct: 5   QFQSRLQVSKILSSSIRKWEIDFPLLHNPLRTPDFSLSPAPSRRFSSNSMDDDRAFSESE 64

Query: 67  PRSSSPHRRSPPDPREARRVPKFTRKVSASYPEDNWNQRVNEHSEGS---------VSRQ 126
           PR++ P RR PPD REARRVP+    V+ SY  DN NQR N HSEGS          SRQ
Sbjct: 65  PRNTPPQRRFPPDHREARRVPRGG--VTDSY--DNRNQRFNRHSEGSSSRFTNEGSTSRQ 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589097.11.55e-83100.00hypothetical protein SDJN03_17662, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022969144.11.25e-5274.26pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita maxima] >X... [more]
KAG7011839.13.53e-5274.26Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
XP_022952706.19.93e-5273.53pentatricopeptide repeat-containing protein At4g38150-like [Cucurbita moschata] ... [more]
KAG6572199.11.43e-5173.53Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
A0A6J1I1Q26.07e-5374.26pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita maxima O... [more]
A0A6J1GKZ04.81e-5273.53pentatricopeptide repeat-containing protein At4g38150-like OS=Cucurbita moschata... [more]
A0A6J1C2J33.98e-4466.18pentatricopeptide repeat-containing protein At4g38150 OS=Momordica charantia OX=... [more]
A0A1S3CFW03.78e-3666.15pentatricopeptide repeat-containing protein At4g38150 OS=Cucumis melo OX=3656 GN... [more]
A0A5D3D5J53.78e-3666.15Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g233780.m01Csor.00g233780.m01mRNA