Csor.00g233710 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g233710
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionvitellogenin
LocationCsor_Chr11: 13648333 .. 13651189 (+)
RNA-Seq ExpressionCsor.00g233710
SyntenyCsor.00g233710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGCACAGTAGTGAAACCACCATGATTGGTACCTCCATAGCTCTCTTACAGGAAAGGTTCAGGCAGTTGCAGAAAGACAAACAAAGGAGAGAGAAGAAGGAGCTTCTTAGCCTGTTGTCTGATTCGAATAGAGTCAATACCTCCTCGATAATGCATTTAGAATCCAATAGGTCGTCGAACTCGAGAGATTTGAACCCTGATTCCCTCTCCCTTGGCTTGAACTCGTCGAGTGCAGGTAAGCAAGTCGATATCCATGAAGCTAGGTTGATGCCTGGAAATTCAGTCATGGGTAGTGGCTTAAGAAGTTGTTTAGATAATCAAGATGTGGATACCACTCTTCATCTATGAACAGTTTGTTCACTTAGTGTTTGTGTTGGTTTATTTGTTGCTTCTCTTCCCACTGATATAGCTTGTGTGATCAATATGTGTATTGATAATGGTCTGGACATTCTGTGAGTTGTTCTTTTCTTGGTTAATTCTTAGGAATGTGTACCTAATGAGAAATGGAGAGAAGGGAAGTAATGGAAAGTTTGGTCATTTTAAATCCTTTCTTTTCTTTTGGGTCATGAGATTCGAATATCTGAGAGTTTTGTGTCGGTGTGTCGCGACTAGAAGCTTTCCATCTTTGGATATATGAACGAGAAATTGTGAAAGTGTCCCGAATTTTATTTTGTGATTAGTTGTCGAGGCAACTAAATTTTGTTTTTTCGGGAAGAAGGGCAAGAGATGCATTTTCATAATGTTTGGAAATATTCAATGTATTTAGGTATTCATTGGACTTTGGTGGGACTTTGGTGATCTAGCCGTGTGAAGCGAAATCTTAATTCTTAACGTTCGAGAAATGATTCTTATTATTCTTTAAAATCATGTTTTTCTATTAGTGATGCACGTCGGAGTTTGATTGTATAAGATAATGTTGCGGTGTGTTTATATTGTTAATTTTAACGTGACTTTCGATGTTTGAGAAATAATAAAGCAATCATCAATCAAATAACATTTTAGCTATCAAATTCACTCCTATGTTTCAATTTGATTTTTTTTAAATATATATTTGAAAATTTTCAAATTTATCCTTATGTTTAATAAACAAAAACTTCAAAAAAAAAAAAAAAAAAAAAATCTTCAAAATTGTAATATTATCGTTGACCTAACATAAATGTTTTAAATCTGTCATTGAAGTGAAAATCTATTTGAATGTTGGACGAAAAATTGACAAAATAGTGATTTGTCATGACACACGGTAACTTTATGTCAAACATTTTAACGAATTTTCTACTTAAAACAGTAAATTTGAAATATTTATCAAAGGTTAAGGTAGATGAGTATATATAGTTTAGCTTTTTGTTAACTAAGTTCATTCTTACATTATGTTAAGACTTAGCTCGCACACTTGCATTATTGCATCGAATAACTTTATGCAATACTGGTGTAGACAAATTCATTGTATACAAGTCTAGCTAATTAGCGTTTTTTTAGCTCGTTGAACTACTATGTTAGTTGTAGCTCTGAAGTTTAATGCTATATGAACGATTGGTAAGGGAAACTTGAGAGTTTAATACATAGTATCACAAATGAACTTCAAATTCGAGTATTGATGAAAGTGGGGATGGGCTATCTATAATTTTTTATCCCTTTAATTTCACTACAAATTTAAGCATATGAATAGCTGAATTCAACTAAATTGGAGCTAGAAATAGCTGAATGCAATCAAATTATCCTCTTCCAATTTCCTTTATTTTAGTTTTGTACAGATATGCGAATTTATGTTGGAAGTTGAAGCAAAGATCTGAAGTTTCAGAAGAAAATCTTAAATAAATCCAACTTTACCAATTTGAGGGCCTCTCCTCTTATAAACAAATAGCTCAAATTTAGACGCATCGTTGAACCCGGCGCTGACCGTATTCGGCCCATTTCTACACGCAAAGACCACGTCTCTCTCTATCTTCTCTATAGGGGTTCGCTAGTTGAACCTCTGTTCGCCTCCTCCTCTTCGTCTTTCGTTTTCAGGGCTTTGAAATCTGCAAATTACCCTACTGATTATGAAACCCAATTCGACCCTTTTCTGATTTCTGGCCTTTCTCACTGCTTTGATCAGCTAAGAATCTCGAATCCGTGGTATAATTGGTGGGTTAGCTCTCTCTTTTCTTTTCTTAGCTTTCTCGTTCTGTATTTGAGTTGGGAAGTTGATGAACTCGCTTGAACTAATGGCGTTTTCTTCTTGATCTTTGGAGTTTCATTTGCTTGTGTTTCTTAGGTATGAACTTGTTGTACGGGCTTGGTTATTCTTGCTAAAACGTTTCTAGTTGTGTTTGGATGCTAGGAGATCTGGGTTTTTTTTGTTCAATTGTTATCAAGTTGTTCTTGATCTAGCTTTAAACTTGCTTTGTTGCTTGTGATTCTATTTCTTTTCGAGCCTGTGGATATGATCTTTAGTCGTTTTGGAATCATGAACTGTTTCGTTTCTCTCCTTGAGTACATTGCGGAGAGGGCTTCCCTTTGTAGTTAGCTCTGTCTCTGCCTTAACCTGAAATTTAAGTGCCTTTTCCGTATGATTCATATGAAATAAATGATCTTATTCCCCATAGTTCTGCGCCTGTGAGCCTCGCCGTGATCATTTAGCGTTTAGATGGTTCTTATCGTTCCAAACCGTACATAATCATTAGTGTCTTATCCATGGTAATCTTGGAAGGGATTGGTAAAATGGCAATTAGGAGTTCTTCTTAGAAGTTGCCTACTCGTAAAATGTTTAATGTATGTACATACTTGTTGAGCAAAGGTTGACGATGGTTATTTATGTTTATGATCGTTTTTTTTACGCAGTAAGATTAATGGGTGCATCGTCTGGTTCTAA

mRNA sequence

ATGGGTAGGCACAGTAGTGAAACCACCATGATTGGTACCTCCATAGCTCTCTTACAGGAAAGGTTCAGGCAGTTGCAGAAAGACAAACAAAGGAGAGAGAAGAAGGAGCTTCTTAGCCTGTTGTCTGATTCGAATAGAGTCAATACCTCCTCGATAATGCATTTAGAATCCAATAGGTCGTCGAACTCGAGAGATTTGAACCCTGATTCCCTCTCCCTTGGCTTGAACTCGTCGAGTGCAGGTAAGCAAGTCGATATCCATGAAGCTAGGGCTTTGAAATCTGCAAATTACCCTACTGATTATGAAACCCAATTCGACCCTTTTCTGATTTCTGGCCTTTCTCACTGCTTTGATCAGCTAAGAATCTCGAATCCGTGGTATAATTGTAAGATTAATGGGTGCATCGTCTGGTTCTAA

Coding sequence (CDS)

ATGGGTAGGCACAGTAGTGAAACCACCATGATTGGTACCTCCATAGCTCTCTTACAGGAAAGGTTCAGGCAGTTGCAGAAAGACAAACAAAGGAGAGAGAAGAAGGAGCTTCTTAGCCTGTTGTCTGATTCGAATAGAGTCAATACCTCCTCGATAATGCATTTAGAATCCAATAGGTCGTCGAACTCGAGAGATTTGAACCCTGATTCCCTCTCCCTTGGCTTGAACTCGTCGAGTGCAGGTAAGCAAGTCGATATCCATGAAGCTAGGGCTTTGAAATCTGCAAATTACCCTACTGATTATGAAACCCAATTCGACCCTTTTCTGATTTCTGGCCTTTCTCACTGCTTTGATCAGCTAAGAATCTCGAATCCGTGGTATAATTGTAAGATTAATGGGTGCATCGTCTGGTTCTAA

Protein sequence

MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRSSNSRDLNPDSLSLGLNSSSAGKQVDIHEARALKSANYPTDYETQFDPFLISGLSHCFDQLRISNPWYNCKINGCIVWF
Homology
BLAST of Csor.00g233710 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 270 bits (690), Expect = 4.13e-91
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0

Query: 1   MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60
           MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS
Sbjct: 1   MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60

Query: 61  SNSRDLNPDSLSLGLNSSSAGKQVDIHEARALKSANYPTDYETQFDPFLISGLSHCFDQL 120
           SNSRDLNPDSLSLGLNSSSAGKQVDIHEARALKSANYPTDYETQFDPFLISGLSHCFDQL
Sbjct: 61  SNSRDLNPDSLSLGLNSSSAGKQVDIHEARALKSANYPTDYETQFDPFLISGLSHCFDQL 120

Query: 121 RISNPWYNCKINGCIVWF 138
           RISNPWYNCKINGCIVWF
Sbjct: 121 RISNPWYNCKINGCIVWF 138

BLAST of Csor.00g233710 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 114 bits (286), Expect = 5.15e-30
Identity = 70/95 (73.68%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60
          MGRH+SE TM+GTSIALLQERFRQLQK+KQRRE+KELL+LL +SNRV+ S IMHLE N S
Sbjct: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDAS-IMHLEPNGS 60

Query: 61 SNSRDLNPDSLSLGLN-SSSAGKQVDI--HEARAL 92
          S SRDL+ +SLSLGLN  ++AGKQVDI  HEAR++
Sbjct: 61 STSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSM 94

BLAST of Csor.00g233710 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (249), Expect = 3.58e-24
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 0

Query: 1   MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLES--N 60
           MGRH SE TM+GTSIALLQERFRQLQK+KQ+RE+KELL+LL +SNRV+ S IMHLE   N
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDAS-IMHLEPEPN 60

Query: 61  RSSNSRDLNPDSLSLGLN-SSSAGKQVDI--HEARALKSANYPTDYETQFDP---FLISG 113
            S   R L+ +SLSLGLN   + GKQVDI  HEAR++ S       +T+F P   F++S 
Sbjct: 61  GSLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPS-------DTKFGPENSFMVST 113

BLAST of Csor.00g233710 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 4.84e-21
Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 0

Query: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60
          M RHSSE  ++GTSIALLQERFRQLQK+K RREKKE++ LLSDSN ++TS          
Sbjct: 3  MSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSLSTS---------- 62

Query: 61 SNSRDLNPDSLSLGLNSSSAGKQVDIHEARAL 92
             RDL  +SLSLGLN  +AGKQVD HE R +
Sbjct: 63 ---RDLAFNSLSLGLNLGNAGKQVDSHEGRLM 81

BLAST of Csor.00g233710 vs. NCBI nr
Match: THF98596.1 (hypothetical protein TEA_013184 [Camellia sinensis var. sinensis])

HSP 1 Score: 70.9 bits (172), Expect = 1.57e-12
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 0

Query: 1   MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSI-------M 60
           MGR  +E TM+G+SIALLQERFR+LQK +++REK+ELL L S+S   +T++         
Sbjct: 1   MGRQHTEPTMVGSSIALLQERFRKLQKVREKREKRELLKLFSESKSPSTAAATPNMPLSF 60

Query: 61  HLESNRSSNSRDLNP-DSLSLGLNSSSAGKQVDIHEARALKSANYPTDYETQ 104
           H E     +S    P D+LSL LNSSS  K  D    +  KSAN  TD + +
Sbjct: 61  HPEMIFPESSPPPPPQDALSLRLNSSSLNKPDDFRAVKTRKSANSRTDIDAE 112

BLAST of Csor.00g233710 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 4.22e-30
Identity = 70/95 (73.68%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60
          MGRH+SE TM+GTSIALLQERFRQLQK+KQRRE+KELL+LL +SNRV+ S IMHLE N S
Sbjct: 1  MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDAS-IMHLEPNGS 60

Query: 61 SNSRDLNPDSLSLGLN-SSSAGKQVDI--HEARAL 92
          S SRDL+ +SLSLGLN  ++AGKQVDI  HEAR++
Sbjct: 61 STSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSM 94

BLAST of Csor.00g233710 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 1.73e-24
Identity = 72/121 (59.50%), Postives = 88/121 (72.73%), Query Frame = 0

Query: 1   MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLES--N 60
           MGRH SE TM+GTSIALLQERFRQLQK+KQ+RE+KELL+LL +SNRV+ S IMHLE   N
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDAS-IMHLEPEPN 60

Query: 61  RSSNSRDLNPDSLSLGLN-SSSAGKQVDI--HEARALKSANYPTDYETQFDP---FLISG 113
            S   R L+ +SLSLGLN   + GKQVDI  HEAR++ S       +T+F P   F++S 
Sbjct: 61  GSLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPS-------DTKFGPENSFMVST 113

BLAST of Csor.00g233710 vs. ExPASy TrEMBL
Match: A0A4V3WJX2 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_013184 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.62e-13
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 0

Query: 1   MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSI-------M 60
           MGR  +E TM+G+SIALLQERFR+LQK +++REK+ELL L S+S   +T++         
Sbjct: 1   MGRQHTEPTMVGSSIALLQERFRKLQKVREKREKRELLKLFSESKSPSTAAATPNMPLSF 60

Query: 61  HLESNRSSNSRDLNP-DSLSLGLNSSSAGKQVDIHEARALKSANYPTDYETQ 104
           H E     +S    P D+LSL LNSSS  K  D    +  KSAN  TD + +
Sbjct: 61  HPEMIFPESSPPPPPQDALSLRLNSSSLNKPDDFRAVKTRKSANSRTDIDAE 112

BLAST of Csor.00g233710 vs. ExPASy TrEMBL
Match: A0A392N8A5 (Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.71e-10
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 0

Query: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60
          MGR  ++ TM+ +SIALLQERFRQL+K K+RRE K+LL+LLS  +  +TS    +  N  
Sbjct: 1  MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLTLLSSESNTSTSQQRLVVPNN- 60

Query: 61 SNSRDLNPDSLSLGLNSSSAGKQVDIHEARALKS 94
             R  + DSLSLGLN +S  KQ D++  ++  S
Sbjct: 61 ---RQTHHDSLSLGLNLTS--KQGDMNTMKSSTS 88

BLAST of Csor.00g233710 vs. ExPASy TrEMBL
Match: A0A2P6S1J5 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.46e-10
Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60
          MGRHSS+  M+ +SIALLQERFRQLQK K+RRE+++LL  LS++ RV   S  H E  R 
Sbjct: 1  MGRHSSDPIMVSSSIALLQERFRQLQKVKERREEQQLLQFLSETERV-APSTRHFEPARP 60

Query: 61 SNSRD----LNP------DSLSLGLNSSSAGKQVD 85
          S   D    L P       SLSLGLN     KQVD
Sbjct: 61 SFQSDMVLPLRPCTPAADSSLSLGLNLQP--KQVD 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589104.14.13e-91100.00hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646145.15.15e-3073.68hypothetical protein Csa_016195, partial [Cucumis sativus][more]
KAA0048752.13.58e-2459.50hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583... [more]
KAG6572236.14.84e-2160.87hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori... [more]
THF98596.11.57e-1245.54hypothetical protein TEA_013184 [Camellia sinensis var. sinensis][more]
Match NameE-valueIdentityDescription
A0A0A0K6174.22e-3073.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1[more]
A0A5D3E6851.73e-2459.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A4V3WJX27.62e-1345.54Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0131... [more]
A0A392N8A51.71e-1047.87Uncharacterized protein OS=Trifolium medium OX=97028 PE=4 SV=1[more]
A0A2P6S1J54.46e-1052.63Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..71
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 1..90
NoneNo IPR availablePANTHERPTHR34570:SF12EXPRESSED PROTEINcoord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g233710.m01Csor.00g233710.m01mRNA