Csor.00g232920 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g232920
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	sulfated surface glycoprotein 185-like
Location	Csor_Chr11: 14116849 .. 14117238 (-)
RNA-Seq Expression	Csor.00g232920
Synteny	Csor.00g232920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAA

mRNA sequence

ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAA

Coding sequence (CDS)

ATGTGTTATGTGGGTAAAGCTACAAAGATCTTCATCTTCATTGTCACCGTTTTGGTGGTTCTTGGCCTTGTTCTAGCCTTTGGAGTCTTCCGCCACAGCCTCCAAAAACCCCACAAGTGCCTCGGAGATTCCTGTTTTTCTCCTCCAACCGCCTTCCCCAACCCCAATTCCGTCCCTTCCGGCAGCGCCGCCTCCAATCAGCCGCAGAACCCACCAAAACCACCGGATTCCAATCCTAACCACCACCCCAAAATCCATTTCCGGCTTCTCCGCCTCCGCCTGACGTTGCTTCTCCACCTCCGCCTGCTACCATCCCAACTCCCTTACCACCACCGCCCCCGCAATCCCAATCTCCGCCTCCTCCAGAAACCGCAGCGGCGGCGCCGTTAA

Protein sequence

MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPSGSAASNQPQNPPKPPDSNPNHHPKIHFRLLRLRLTLLLHLRLLPSQLPYHHRPRNPNLRLLQKPQRRRR

Homology

[Close]

BLAST of Csor.00g232920 vs. NCBI nr
Match: KAG6589183.1 (hypothetical protein SDJN03_17748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253 bits (646), Expect = 1.08e-84
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
           MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS
Sbjct: 1   MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60

Query: 61  GSAASNQPQNPPKPPDSNPNHHPKIHFRLLRLRLTLLLHLRLLPSQLPYHHRPRNPNLRL 120
           GSAASNQPQNPPKPPDSNPNHHPKIHFRLLRLRLTLLLHLRLLPSQLPYHHRPRNPNLRL
Sbjct: 61  GSAASNQPQNPPKPPDSNPNHHPKIHFRLLRLRLTLLLHLRLLPSQLPYHHRPRNPNLRL 120

Query: 121 LQKPQRRRR 129
           LQKPQRRRR
Sbjct: 121 LQKPQRRRR 129

[Close]

BLAST of Csor.00g232920 vs. NCBI nr
Match: XP_023530339.1 (sulfated surface glycoprotein 185-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162 bits (409), Expect = 3.56e-48
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPPKPPDSNPNHHPKIHF 87
          GSAASNQPQNPPKPPDSNPN  P+  F
Sbjct: 61 GSAASNQPQNPPKPPDSNPNPPPQNRF 87

[Close]

BLAST of Csor.00g232920 vs. NCBI nr
Match: XP_022930697.1 (sulfated surface glycoprotein 185-like [Cucurbita moschata] >KAG7022883.1 hypothetical protein SDJN02_16619, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161 bits (407), Expect = 7.17e-48
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPPKPPDSNPNHHPKIHF 87
          GSAASNQPQNPPKPPDSNPN  P+  F
Sbjct: 61 GSAASNQPQNPPKPPDSNPNPPPQNPF 87

[Close]

BLAST of Csor.00g232920 vs. NCBI nr
Match: XP_022989502.1 (sulfated surface glycoprotein 185-like [Cucurbita maxima])

HSP 1 Score: 157 bits (398), Expect = 1.67e-46
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVT+LVVLGLVLAFGVFRHSLQKPHKCL DSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTILVVLGLVLAFGVFRHSLQKPHKCLRDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPPKPPDSNPNHHPKIHF 87
          GSAASNQPQNPPKPPDSNPN  P+  F
Sbjct: 61 GSAASNQPQNPPKPPDSNPNPPPQNPF 87

[Close]

BLAST of Csor.00g232920 vs. NCBI nr
Match: XP_022953003.1 (sulfated surface glycoprotein 185-like [Cucurbita moschata])

HSP 1 Score: 127 bits (318), Expect = 4.00e-34
Identity = 67/88 (76.14%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  FPNPNS   
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPVVFPNPNSATP 60

Query: 61 GSAA----SNQPQNPPKPPDSNPNHHPK 84
          G AA    SNQPQNPP PPDSNPN  P+
Sbjct: 61 GGAAPISASNQPQNPPNPPDSNPNPPPQ 88

[Close]

BLAST of Csor.00g232920 vs. ExPASy TrEMBL
Match: A0A6J1ERB2 (sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC111437094 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 3.47e-48
Identity = 82/87 (94.25%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPPKPPDSNPNHHPKIHF 87
          GSAASNQPQNPPKPPDSNPN  P+  F
Sbjct: 61 GSAASNQPQNPPKPPDSNPNPPPQNPF 87

[Close]

BLAST of Csor.00g232920 vs. ExPASy TrEMBL
Match: A0A6J1JG03 (sulfated surface glycoprotein 185-like OS=Cucurbita maxima OX=3661 GN=LOC111486559 PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 8.10e-47
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVT+LVVLGLVLAFGVFRHSLQKPHKCL DSCFSPPTAFPNPNSVPS
Sbjct: 1  MCYVGKATKIFIFIVTILVVLGLVLAFGVFRHSLQKPHKCLRDSCFSPPTAFPNPNSVPS 60

Query: 61 GSAASNQPQNPPKPPDSNPNHHPKIHF 87
          GSAASNQPQNPPKPPDSNPN  P+  F
Sbjct: 61 GSAASNQPQNPPKPPDSNPNPPPQNPF 87

[Close]

BLAST of Csor.00g232920 vs. ExPASy TrEMBL
Match: A0A6J1GM63 (sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC111455518 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 1.93e-34
Identity = 67/88 (76.14%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  FPNPNS   
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPVVFPNPNSATP 60

Query: 61 GSAA----SNQPQNPPKPPDSNPNHHPK 84
          G AA    SNQPQNPP PPDSNPN  P+
Sbjct: 61 GGAAPISASNQPQNPPNPPDSNPNPPPQ 88

[Close]

BLAST of Csor.00g232920 vs. ExPASy TrEMBL
Match: A0A6J1HW34 (vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC111468063 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 3.03e-34
Identity = 67/88 (76.14%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  FPNPNS   
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFMRHGLQKSHKCSGNSCFSPPVVFPNPNSATP 60

Query: 61 GSAA----SNQPQNPPKPPDSNPNHHPK 84
          G AA    SNQPQNPP PPDSNPN  P+
Sbjct: 61 GGAAPISASNQPQNPPNPPDSNPNPPPQ 88

[Close]

BLAST of Csor.00g232920 vs. ExPASy TrEMBL
Match: A0A6J1C2B8 (proline-rich receptor-like protein kinase PERK2 OS=Momordica charantia OX=3673 GN=LOC111007732 PE=4 SV=1)

HSP 1 Score: 118 bits (296), Expect = 3.19e-31
Identity = 64/88 (72.73%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          MCYVGKATKIFIFIVTVLVVLGLVL FG  RH LQK HKC G+SCFSPP  FP+PNS P 
Sbjct: 1  MCYVGKATKIFIFIVTVLVVLGLVLGFGFLRHGLQKSHKCSGNSCFSPPDVFPDPNSAPP 60

Query: 61 GSAA----SNQPQNPPKPPDSNPNHHPK 84
          G AA    SNQP N P P DSNPN  P+
Sbjct: 61 GGAAPISASNQPGNSPTPTDSNPNPPPQ 88

[Close]

BLAST of Csor.00g232920 vs. TAIR 10
Match: AT3G22070.1 (proline-rich family protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 1  MCYVGKATKIFIFIVTVLVVLGLVLAFGVFRHSLQKPHKCLGDSCFSPPTAFPNPNSVPS 60
          +CYVGKATKIFIFIVTV+ V+GLV+AFGV R   +  H C GD C S      +P+S  S
Sbjct: 2  LCYVGKATKIFIFIVTVVFVIGLVVAFGVLR---RHSHHCSGDYCSSS----TDPSSSSS 61

Query: 61 GSAASNQPQNPPKP-PDSNPNHHPKI 86
           S++S  P   P P P+ NPN +P +
Sbjct: 62 SSSSSTSPFITPFPNPNPNPNPNPPV 80

The following BLAST results are available for this feature:

BLAST of Csor.00g232920 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g232920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589183.1	1.08e-84	100.00	hypothetical protein SDJN03_17748, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023530339.1	3.56e-48	94.25	sulfated surface glycoprotein 185-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930697.1	7.17e-48	94.25	sulfated surface glycoprotein 185-like [Cucurbita moschata] >KAG7022883.1 hypoth...	[more]
XP_022989502.1	1.67e-46	91.95	sulfated surface glycoprotein 185-like [Cucurbita maxima]	[more]
XP_022953003.1	4.00e-34	76.14	sulfated surface glycoprotein 185-like [Cucurbita moschata]	[more]

BLAST of Csor.00g232920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ERB2	3.47e-48	94.25	sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1JG03	8.10e-47	91.95	sulfated surface glycoprotein 185-like OS=Cucurbita maxima OX=3661 GN=LOC1114865...	[more]
A0A6J1GM63	1.93e-34	76.14	sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1HW34	3.03e-34	76.14	vegetative cell wall protein gp1-like OS=Cucurbita maxima OX=3661 GN=LOC11146806...	[more]
A0A6J1C2B8	3.19e-31	72.73	proline-rich receptor-like protein kinase PERK2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Csor.00g232920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22070.1	2.8e-11	51.16	proline-rich family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..83
IPR040277	Uncharacterized protein Os04g0629400-like	PANTHER	PTHR36036	PROLINE-RICH FAMILY PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g232920.m01	Csor.00g232920.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane