Csor.00g232820 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g232820
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein THYLAKOID FORMATION1, chloroplastic-like
Location	Csor_Chr11: 14170150 .. 14173410 (-)
RNA-Seq Expression	Csor.00g232820
Synteny	Csor.00g232820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTTAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTACACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCACCGGAACAGGTAGCTTCTGGTGATTTGTTTTTCTTACTCGCTTACTAGACTGTTCCTTTGCTAGATTATGGTAGCAGAAACGAATTGGCTTGTTTCGATGATTTCGATGTGAACTTGTGTTTTGTTTGTTCGTTAATTGTTGAGATGGATCGTTATGGACGGAAATTTAGGTTTTAAGTAACAATTAGGCTTTCAATAGTTCGGTTTGATCAATTCTAAACTTGTTCAGTATGTTGAGATTTCTCTAGTTCGATTTCTTGGTATTTGAGTGTAGAAAATGATGTGCTATTTTCGGATTTTAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTTTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGCTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTTACCATCCCTGATCTCTATCTCTTCTTGCCATCTAATAAATTCACTAGCCTTGTTCATAGATAGTAAACATTGTTAAGTTGAAAAAAACATGATATGATTCCACTTACAGCAAAAATACGACGATTCTTATTTCAACTTTTATCTTCTTTCTACTATTTCACATCTTAATTTGGACTTAGTTGTCTAAATGACTAGATTATTTGGTCAAATCACATGGTAATCTAATTAACGGATGTTTACTCTTTGTTCAATATCTCCAAGAGTGGAATTTTCTTCACTGGAAATTATATTCCATCCTTCGGCCATTATTCCAATAATTTCAAGAAGGTTTTTCTTCATTTTTAGTTCTACTTTCTGTTATACCGTCCAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGAATCAAAAGAAGGAGAAGTTGAGAGTATTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGGTTTATTTTATCTTCCTTTTTGTGATATAGCTTTTAAGTAGATGACGATTTTGAGGTGATAGTATATCCAGCCTATTATTGCTAAATTAAACATTTACATGATAGCCAGCCCCTCCTCTCATAGTACTTTTACTTATAGATTATATTCTTTCTCTGAGTGCTGCCATTCGTAAAGTGTAATTGTGTTTCTTGCTCATTATTATCTTTTTCACTCATTAGAGAAATTGGATCCTGATGGAAGAGTGCTTAACCTTATTCAGTTCGATAGAATTAGGTTCAAGGTACTCTTTCCTGCATAAGTCTCCATTTTACTTTTCTAGGTAACACCAATCTTTTTGTAGTATTTGGTTGAAGAGAAATATGAGCTAACCATTTTTTGGAACATTCCCCTTTGCTCGGGACAATCCCACATACACAATTACAGTGTTTTTGTGGGATTTCCTTCTCCTTTGTGGAGATTGTACTGATCTTGTGGATGTAGTTTATGCTCTTTAGTAGTCTCAACTGGTCCTTTTCATTCAGTTTATTAGCTCTTGTGAAGGGAAACATACATATGTTCCTCTGCCCCCATCAACAACAGTTATCATGAACTATTGCTTTAATTGCCCATCTCTATTTAGCTTGTCTATCACCAAACATACTTTTATTTTTCTAAAACAGCTAAAGCCATGTAATGGAGATTTTACCAAGTGTTGACATCTAACACTTTGCTGCTTCTGAACAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATACGTTGATAGGTAAGAGATTTTTTAAGTTCATGGTTCCTGGCCTGGTAGATTAACATACCCACAATCTGCTCTTTCACACCACCATATTTTCTTGGATTTTATGAACCCATAATCGTTTTGAAAACAATCCAGTATTTGTCAAATCCTCTACAACTCACCGTCATATCATTTATATTTACTAGATATCCGCCACTTGGCTGTGTTTTAAGATGAATGTGATGTTTTATGAAAGTTTAAATGAAATATTTCTGCATTCAATGTTCATGATATGTATACAGTGGTGACCTTAGATTAAGTGGAAAAATTTCGGGTCGTTACATGGATCTTGAGTGAGGGTGGCTGTGTTTTAAGATGAAGGTGATGTTTTATGAAAGTTTAAATGAAATATTTCTGCATTCAATGTTCATGATATGTATACAGTAGCGGCCTTAAATTAAGTAGAAAATTTCGGATCGTTACATGGATCTTGGGTGAGACTGATTGTGTTTTAAAATGAAGGTGATGTTTTATGAAAGTTTAAATGAAGTATTTTTGCATTCAATGTTCATGACATGTATACAGTGATGACCTTAAATTAAGTAAAAAATTTCGAGTCGTTACATGGATCTTGAGTGAGGTTGGCTGTGTTTTAAGATGAAGGTGATGTTATGAAAGTTTAAATGAAGTATTTCTGCATTCAATGGTTATAATATGTATGCAGTGGCGACCTTAAATTAAGTAGAAAATTTCGGATCGTTACATGGGTCTTGGGTCTTGGGGAGGCTAAAAATTGGGTGAGGTTGGCTGTGTTTTAAGATGAAGGTGATGTTATGAAAGTTTAAATGAAGTATTTTTGCATTCAATGGTTATGATATGTATACAGTGGCGACCTTAAATTAAGTAGAAAACTTCGGATCGCTACATGGGTCTTGGGGAGGCCTAAAAATGAGGCAGAATTGGGTGGATCATGGTATAATTAACCAGTGCTCTTCAATTCTGTTTTTGCCTATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGA

mRNA sequence

ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTTAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTACACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCACCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTTTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGCTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGAATCAAAAGAAGGAGAAGTTGAGAGTATTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATACGTTGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGA

Coding sequence (CDS)

ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTTAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTACACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCACCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTTTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGCTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGAATCAAAAGAAGGAGAAGTTGAGAGTATTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATACGTTGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGA

Protein sequence

MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESKEGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK

Homology

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BLAST of Csor.00g232820 vs. ExPASy Swiss-Prot
Match: Q7XAB8 (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1 PE=2 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 6.5e-106
Identity = 204/288 (70.83%), Postives = 245/288 (85.07%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV SVSFS ++Q ++R+S V S+R++    D FRFRS+  +    VR+S+ +SR V+H
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  C-MSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C  S+  D+ TVA+TKL FL AYKRPIP++YN+VLQELIVQQHL RYK++Y+YDPVFALG
Sbjct: 61  CTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFES 180
           FVTVYDQLM+GYPS+EDR AIF+AYI+AL EDPEQYR DAQKLEEWAR+Q+A +LV+F S
Sbjct: 121 FVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSS 180

Query: 181 KEGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           KEGE+E+I KDIA+RA +K  F YSR FA+GLFRLLELAN T+P+ILEKLCAALNV+KKS
Sbjct: 181 KEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE VTK
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTK 283

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BLAST of Csor.00g232820 vs. ExPASy Swiss-Prot
Match: Q9SKT0 (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THF1 PE=1 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.3e-101
Identity = 200/286 (69.93%), Postives = 242/286 (84.62%), Query Frame = 0


Query: 3   AVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  STGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVD 242
           G++E++LKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN++KKSVD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE ++K
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISK 283

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BLAST of Csor.00g232820 vs. ExPASy Swiss-Prot
Match: Q84PB7 (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=THF1 PE=2 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.9e-98
Identity = 196/288 (68.06%), Postives = 235/288 (81.60%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAA++S+ F+ + + +D R   PS    A+         SV             SR V+ 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTAAAAAGAGAGAVVLSV--------RPRRGSRSVVR 60

Query: 61  CMSTGTDV-TTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C++T  DV  TVAETK+NFLK+YKRPI SIY++VLQEL+VQQHLMRYK TY+YD VFALG
Sbjct: 61  CVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFES 180
           FVTVYDQLM+GYPS+EDR+AIF+AYI ALNEDPEQYR DAQK+EEWARSQ+  SLVEF S
Sbjct: 121 FVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSS 180

Query: 181 KEGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           K+GE+E+ILKDI+ERA  KGSFSYSRFFA+GLFRLLELANATEP+IL+KLCAALN++K+S
Sbjct: 181 KDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ER+ +  +NEAVTK
Sbjct: 241 VDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

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BLAST of Csor.00g232820 vs. ExPASy Swiss-Prot
Match: B0C3M8 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-35
Identity = 83/219 (37.90%), Postives = 134/219 (61.19%), Query Frame = 0


Query: 67  DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQ 126
           ++ TV++TK  F   + RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D+
Sbjct: 3   NLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDR 62

Query: 127 LMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF-----ESKE 186
            MDGY  + D++AIF A  KA   DP Q + D Q+L E A+S+SA  ++++      S  
Sbjct: 63  FMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGG 122

Query: 187 GEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELA--NATE-----PSILEKLCAALN 246
            E++  L++IA+       F YSR FAIGLF LLEL+  N T+        L  +C  LN
Sbjct: 123 DELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLN 182

Query: 247 VDKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRD 274
           + +  + +DL++YR  L K+ Q ++ + + ++ +KK+R+
Sbjct: 183 ISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

[Close]

BLAST of Csor.00g232820 vs. ExPASy Swiss-Prot
Match: Q116P5 (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.8e-32
Identity = 80/216 (37.04%), Postives = 129/216 (59.72%), Query Frame = 0


Query: 70  TVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMD 129
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D+ M 
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 130 GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF--ESKEGEVESI 189
           GY   ED+ +IF A I+   EDP +YR DA+ LE+ A   SA+ ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERAASKGSFSYSRFFAIGLFRLLELANA-------TEPSILEKLCAALNVDKKSV 249
           L+D     +    F YSR FAIGLF LLE+ +             L+K+C +LN+ ++ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 250 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERA 277
            +D+D+Y + L ++ QA+  +++ +   +KKR++R+
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

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BLAST of Csor.00g232820 vs. NCBI nr
Match: KAG6589193.1 (Protein THYLAKOID FORMATION1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 543 bits (1398), Expect = 4.09e-194
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV
Sbjct: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287

[Close]

BLAST of Csor.00g232820 vs. NCBI nr
Match: XP_022988874.1 (protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 538 bits (1387), Expect = 1.94e-192
Identity = 284/287 (98.95%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSP+PSAR+LASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPIPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF SK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV
Sbjct: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287

[Close]

BLAST of Csor.00g232820 vs. NCBI nr
Match: XP_022930881.1 (protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita moschata] >XP_023531402.1 protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 536 bits (1382), Expect = 1.12e-191
Identity = 283/287 (98.61%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSPVPSAR+LASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF SK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV
Sbjct: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287

[Close]

BLAST of Csor.00g232820 vs. NCBI nr
Match: XP_008455361.1 (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo] >KAA0031606.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa] >TYK07058.1 protein THYLAKOID FORMATION1 [Cucumis melo var. makuwa])

HSP 1 Score: 501 bits (1289), Expect = 2.49e-177
Identity = 259/287 (90.24%), Postives = 278/287 (96.86%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+R+L+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEF S+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITK 287

[Close]

BLAST of Csor.00g232820 vs. NCBI nr
Match: XP_022136235.1 (protein THYLAKOID FORMATION1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 499 bits (1286), Expect = 7.15e-177
Identity = 262/287 (91.29%), Postives = 276/287 (96.17%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFS +SQ S+RR  VPSAR+LASNFDGFRFR+SVF H+SGVRTSS+SSR+V+H
Sbjct: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETK NFLK YKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDA+KLEEWARSQ+AASLVEF SK
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERA  KGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNV+KKSV
Sbjct: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITK 287

[Close]

BLAST of Csor.00g232820 vs. ExPASy TrEMBL
Match: A0A6J1JMT7 (protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486096 PE=3 SV=1)

HSP 1 Score: 538 bits (1387), Expect = 9.40e-193
Identity = 284/287 (98.95%), Postives = 286/287 (99.65%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSP+PSAR+LASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPIPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF SK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV
Sbjct: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287

[Close]

BLAST of Csor.00g232820 vs. ExPASy TrEMBL
Match: A0A6J1ES50 (protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111437233 PE=3 SV=1)

HSP 1 Score: 536 bits (1382), Expect = 5.44e-192
Identity = 283/287 (98.61%), Postives = 285/287 (99.30%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSPVPSAR+LASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF SK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV
Sbjct: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287

[Close]

BLAST of Csor.00g232820 vs. ExPASy TrEMBL
Match: A0A5D3C7D3 (Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003760 PE=3 SV=1)

HSP 1 Score: 501 bits (1289), Expect = 1.21e-177
Identity = 259/287 (90.24%), Postives = 278/287 (96.86%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+R+L+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEF S+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITK 287

[Close]

BLAST of Csor.00g232820 vs. ExPASy TrEMBL
Match: A0A1S3C0V5 (protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495547 PE=3 SV=1)

HSP 1 Score: 501 bits (1289), Expect = 1.21e-177
Identity = 259/287 (90.24%), Postives = 278/287 (96.86%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+R+L+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEF S+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITK 287

[Close]

BLAST of Csor.00g232820 vs. ExPASy TrEMBL
Match: A0A6J1C3B8 (protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007981 PE=3 SV=1)

HSP 1 Score: 499 bits (1286), Expect = 3.46e-177
Identity = 262/287 (91.29%), Postives = 276/287 (96.17%), Query Frame = 0


Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFS +SQ S+RR  VPSAR+LASNFDGFRFR+SVF H+SGVRTSS+SSR+V+H
Sbjct: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETK NFLK YKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDA+KLEEWARSQ+AASLVEF SK
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVESILKDIAERA  KGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNV+KKSV
Sbjct: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVNKKSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 287
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITK 287

[Close]

BLAST of Csor.00g232820 vs. TAIR 10
Match: AT2G20890.1 (photosystem II reaction center PSB29 protein )

HSP 1 Score: 370.9 bits (951), Expect = 9.1e-103
Identity = 200/286 (69.93%), Postives = 242/286 (84.62%), Query Frame = 0


Query: 3   AVNSVSFSTVSQFSDRRSPVPSARTLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  STGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFESKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVD 242
           G++E++LKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN++KKSVD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE ++K
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISK 283

The following BLAST results are available for this feature:

BLAST of Csor.00g232820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XAB8	6.5e-106	70.83	Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1...	[more]
Q9SKT0	1.3e-101	69.93	Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q84PB7	2.9e-98	68.06	Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=3...	[more]
B0C3M8	1.6e-35	37.90	Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 ...	[more]
Q116P5	2.8e-32	37.04	Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 ...	[more]

BLAST of Csor.00g232820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589193.1	4.09e-194	100.00	Protein THYLAKOID FORMATION1, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_022988874.1	1.94e-192	98.95	protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita maxima]	[more]
XP_022930881.1	1.12e-191	98.61	protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita moschata] >XP_023531...	[more]
XP_008455361.1	2.49e-177	90.24	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo] >KAA003160...	[more]
XP_022136235.1	7.15e-177	91.29	protein THYLAKOID FORMATION1, chloroplastic isoform X1 [Momordica charantia]	[more]

BLAST of Csor.00g232820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JMT7	9.40e-193	98.95	protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1ES50	5.44e-192	98.61	protein THYLAKOID FORMATION1, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A5D3C7D3	1.21e-177	90.24	Protein THYLAKOID FORMATION1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C0V5	1.21e-177	90.24	protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A6J1C3B8	3.46e-177	91.29	protein THYLAKOID FORMATION1, chloroplastic isoform X1 OS=Momordica charantia OX...	[more]

BLAST of Csor.00g232820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20890.1	9.1e-103	69.93	photosystem II reaction center PSB29 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..287
None	No IPR available	PANTHER	PTHR34793:SF7	PHOTOSYSTEM II BIOGENESIS PROTEIN	coord: 1..286
IPR017499	Protein Thf1	PFAM	PF11264	ThylakoidFormat	coord: 70..275 e-value: 1.5E-75 score: 253.6
IPR017499	Protein Thf1	TIGRFAM	TIGR03060	TIGR03060	coord: 67..272 e-value: 2.6E-47 score: 159.3
IPR017499	Protein Thf1	PANTHER	PTHR34793	PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC	coord: 1..286
IPR017499	Protein Thf1	HAMAP	MF_01843	Thf1	coord: 65..273 score: 22.266451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g232820.m01	Csor.00g232820.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0015979	photosynthesis