Csor.00g232800 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g232800
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Wound-responsive family protein
Location	Csor_Chr11: 14176943 .. 14177200 (+)
RNA-Seq Expression	Csor.00g232800
Synteny	Csor.00g232800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCATCAAGAACAGCTTGGGTTGTCGCCGCCAGTGTCGGACTGGTGGAGGCTTTGAAAGATCAAGGGGTTTGCCGCTGGAATCACACGATTAGGTCGGTTCAGCAGTACGCTAAAAGCCATGTGAGATCTGCTTCCCAGGTCAATAAGCTTTCTTCGCCGTCGTCTCCGGCGGTTTCCGACCAGAAATGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTTCTTGAGCTGTTGGGGTCCTAATAATTGA

mRNA sequence

ATGAGTTCATCAAGAACAGCTTGGGTTGTCGCCGCCAGTGTCGGACTGGTGGAGGCTTTGAAAGATCAAGGGGTTTGCCGCTGGAATCACACGATTAGGTCGGTTCAGCAGTACGCTAAAAGCCATGTGAGATCTGCTTCCCAGGTCAATAAGCTTTCTTCGCCGTCGTCTCCGGCGGTTTCCGACCAGAAATGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTTCTTGAGCTGTTGGGGTCCTAATAATTGA

Coding sequence (CDS)

ATGAGTTCATCAAGAACAGCTTGGGTTGTCGCCGCCAGTGTCGGACTGGTGGAGGCTTTGAAAGATCAAGGGGTTTGCCGCTGGAATCACACGATTAGGTCGGTTCAGCAGTACGCTAAAAGCCATGTGAGATCTGCTTCCCAGGTCAATAAGCTTTCTTCGCCGTCGTCTCCGGCGGTTTCCGACCAGAAATGGAAGCAGTCGGAGGAATCTTTGAGAACTGTCATGTTCTTGAGCTGTTGGGGTCCTAATAATTGA

Protein sequence

MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAVSDQKWKQSEESLRTVMFLSCWGPNN

Homology

[Close]

BLAST of Csor.00g232800 vs. NCBI nr
Match: KAG6589195.1 (hypothetical protein SDJN03_17760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (435), Expect = 6.67e-54
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV
Sbjct: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQSEESLRTVMFLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85

[Close]

BLAST of Csor.00g232800 vs. NCBI nr
Match: XP_022930886.1 (uncharacterized protein LOC111437236 isoform X2 [Cucurbita moschata])

HSP 1 Score: 169 bits (429), Expect = 5.50e-53
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQV KLSSPSSPAV
Sbjct: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQSEESLRTVMFLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85

[Close]

BLAST of Csor.00g232800 vs. NCBI nr
Match: XP_022930885.1 (uncharacterized protein LOC111437236 isoform X1 [Cucurbita moschata])

HSP 1 Score: 169 bits (429), Expect = 6.80e-53
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQV KLSSPSSPAV
Sbjct: 8  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 67

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQSEESLRTVMFLSCWGPNN
Sbjct: 68 SDQKWKQSEESLRTVMFLSCWGPNN 92

[Close]

BLAST of Csor.00g232800 vs. NCBI nr
Match: XP_023531407.1 (uncharacterized protein LOC111793656 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162 bits (411), Expect = 3.07e-50
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSRTAWVVAASVG+VEALKDQGVCRWNHTIRSVQQYAKSH RSASQV KLSSPSS AV
Sbjct: 1  MSSSRTAWVVAASVGVVEALKDQGVCRWNHTIRSVQQYAKSHARSASQVKKLSSPSSAAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQS+ESLRTVMFLSCWGPNN
Sbjct: 61 SDQKWKQSQESLRTVMFLSCWGPNN 85

[Close]

BLAST of Csor.00g232800 vs. NCBI nr
Match: XP_023531405.1 (uncharacterized protein LOC111793656 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162 bits (411), Expect = 3.79e-50
Identity = 80/85 (94.12%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSRTAWVVAASVG+VEALKDQGVCRWNHTIRSVQQYAKSH RSASQV KLSSPSS AV
Sbjct: 8  MSSSRTAWVVAASVGVVEALKDQGVCRWNHTIRSVQQYAKSHARSASQVKKLSSPSSAAV 67

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQS+ESLRTVMFLSCWGPNN
Sbjct: 68 SDQKWKQSQESLRTVMFLSCWGPNN 92

[Close]

BLAST of Csor.00g232800 vs. ExPASy TrEMBL
Match: A0A6J1ES53 (uncharacterized protein LOC111437236 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437236 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 2.66e-53
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQV KLSSPSSPAV
Sbjct: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQSEESLRTVMFLSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85

[Close]

BLAST of Csor.00g232800 vs. ExPASy TrEMBL
Match: A0A6J1EY16 (uncharacterized protein LOC111437236 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437236 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 3.29e-53
Identity = 84/85 (98.82%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQV KLSSPSSPAV
Sbjct: 8  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVKKLSSPSSPAV 67

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQSEESLRTVMFLSCWGPNN
Sbjct: 68 SDQKWKQSEESLRTVMFLSCWGPNN 92

[Close]

BLAST of Csor.00g232800 vs. ExPASy TrEMBL
Match: A0A6J1GJQ8 (uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC111454919 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 6.83e-47
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSR AWVVAASVG+VEALKDQGVCRWNH I+SVQQYAK+HVRS SQ  KLSSPS+ AV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHAIKSVQQYAKNHVRSVSQAKKLSSPSTAAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQSEESLRTVM+LSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Csor.00g232800 vs. ExPASy TrEMBL
Match: A0A6J1HXF9 (uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 1.96e-46
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MSSSR AWVVAASVG+VEALKDQGVCRWNHTI+SVQQYAK+HVRS SQ  KLSS S+ AV
Sbjct: 1  MSSSRRAWVVAASVGVVEALKDQGVCRWNHTIKSVQQYAKNHVRSVSQAKKLSSTSTAAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SDQKWKQSEESLRTVM+LSCWGPNN
Sbjct: 61 SDQKWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Csor.00g232800 vs. ExPASy TrEMBL
Match: A0A5D3C714 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003720 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 9.34e-45
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPAV 60
          MS SR  WVVAASVG+VEALKDQG+CRWNHTIRS+QQYAK+HVRS SQ  KLSSPS+ AV
Sbjct: 1  MSCSRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SDQKWKQSEESLRTVMFLSCWGPNN 85
          SD +WKQSEESLRTVM+LSCWGPNN
Sbjct: 61 SDHRWKQSEESLRTVMYLSCWGPNN 85

[Close]

BLAST of Csor.00g232800 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-22
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQ-GVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPA 60
          MSS+   W+VAAS+G VEALKDQ GVCRWN+ IRS  QY ++++RS SQ  KLSS S   
Sbjct: 1  MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query: 61 VSDQKWKQSEESLRTVMFLSCWGPN 85
           +  K KQ+EESLRTVM+LSCWGP+
Sbjct: 61 TN--KTKQAEESLRTVMYLSCWGPS 83

[Close]

BLAST of Csor.00g232800 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-21
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MSSSRTAWVVAASVGLVEALKDQ-GVCRWNHTIRSVQQYAKSHVRSASQVNKLSSPSSPA 60
          MSS+  AW VA S+G VEALKDQ G+CRWN+ +RSV Q+ +++VRS SQ  + SS S  A
Sbjct: 1  MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query: 61 V-----SDQKWKQSEESLRTVMFLSCWGPN 85
                  +K K++EESLRTVM+LSCWGPN
Sbjct: 61 AVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Csor.00g232800 vs. TAIR 10
Match: AT4G33560.1 (Wound-responsive family protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 2  SSSRTAWVVAASVGLVEALKDQGVCRWNHTIRSVQQYAKSHVRSASQVNKLSSP--SSPA 61
          +  + +W VA ++  VE LKDQGV RWN+  R + + A + VR+ +  ++ S P  SS A
Sbjct: 3  AGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSA 62

Query: 62 VSDQKWKQS----EESLRTVMFLSCWGP 84
           S +    S    E S    M LSC+GP
Sbjct: 63 TSIRSKPLSTTPFETSFEKAMGLSCFGP 90

[Close]

BLAST of Csor.00g232800 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.7e-04
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 24 GVCRWNHTIRSVQQYAKSHVRSASQVNK-------LSSPSSPAVSDQKWKQSEESLRTVM 83
          GV   + T+RS  + + S  +SAS  +        L S    A + ++ +Q+EESLRTVM
Sbjct: 20 GVSGGDTTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVM 79

The following BLAST results are available for this feature:

BLAST of Csor.00g232800 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g232800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589195.1	6.67e-54	100.00	hypothetical protein SDJN03_17760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930886.1	5.50e-53	98.82	uncharacterized protein LOC111437236 isoform X2 [Cucurbita moschata]	[more]
XP_022930885.1	6.80e-53	98.82	uncharacterized protein LOC111437236 isoform X1 [Cucurbita moschata]	[more]
XP_023531407.1	3.07e-50	94.12	uncharacterized protein LOC111793656 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023531405.1	3.79e-50	94.12	uncharacterized protein LOC111793656 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g232800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ES53	2.66e-53	98.82	uncharacterized protein LOC111437236 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EY16	3.29e-53	98.82	uncharacterized protein LOC111437236 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GJQ8	6.83e-47	87.06	uncharacterized protein LOC111454919 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1HXF9	1.96e-46	87.06	uncharacterized protein LOC111468355 OS=Cucurbita maxima OX=3661 GN=LOC111468355...	[more]
A0A5D3C714	9.34e-45	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Csor.00g232800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10265.1	4.0e-22	62.35	Wound-responsive family protein	[more]
AT4G10270.1	7.5e-21	56.67	Wound-responsive family protein	[more]
AT4G33560.1	1.2e-07	37.50	Wound-responsive family protein	[more]
AT4G05070.1	1.7e-04	40.91	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 10..83 e-value: 5.3E-31 score: 107.5
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..84
None	No IPR available	PANTHER	PTHR33090:SF50	FAMILY PROTEIN, PUTATIVE-RELATED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g232800.m01	Csor.00g232800.m01	mRNA