Csor.00g232570 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g232570
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionPhospho-N-acetylmuramoyl-pentapeptide-transferase, putative
LocationCsor_Chr11: 14266958 .. 14267294 (-)
RNA-Seq ExpressionCsor.00g232570
SyntenyCsor.00g232570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATAGCAGGGCTATTCGCCGCGGCCGCCGCCTCCGCCTCCACCATCGTCCTGTCAGCTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGTAAGAAGACACTAACTTCTCATTTCTCGGATACCCTTTTATAATCTAACATCTTCGAAAAGAAAATTCTTGGCAATAACCGATGTGGGACGAAATTCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

mRNA sequence

ATGAAGATAGCAGGGCTATTCGCCGCGGCCGCCGCCTCCGCCTCCACCATCGTCCTGTCAGCTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

Coding sequence (CDS)

ATGAAGATAGCAGGGCTATTCGCCGCGGCCGCCGCCTCCGCCTCCACCATCGTCCTGTCAGCTCCGCCGTCCTCCGCCGGCCTCCACAAAACCACCTTCTCCCATCAGGAAAAGGTCAACAGAGACGAGGAAATTAGTCCGTCGAGAAGATCCCCGCCGTCCACGGCGCCCGATCACTTTGCTCCGAGATTCGATGGGTTGCGATTCATTGAAACTCTAGTCACTGCTCATAGATAA

Protein sequence

MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHFAPRFDGLRFIETLVTAHR
Homology
BLAST of Csor.00g232570 vs. NCBI nr
Match: KAG6589218.1 (hypothetical protein SDJN03_17783, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (380), Expect = 1.00e-45
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHF 60
          MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHF
Sbjct: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDHF 60

Query: 61 APRFDGLRFIETLVTAHR 78
          APRFDGLRFIETLVTAHR
Sbjct: 61 APRFDGLRFIETLVTAHR 78

BLAST of Csor.00g232570 vs. NCBI nr
Match: KAG7022918.1 (hypothetical protein SDJN02_16654, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (365), Expect = 2.01e-43
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0

Query: 1  MKIAGLFA-AAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH 60
          MKIAGLFA AAAA+ASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH
Sbjct: 1  MKIAGLFAVAAAAAASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEISPSRRSPPSTAPDH 60

Query: 61 FAPRFDGLRFIETLVTAHR 78
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

BLAST of Csor.00g232570 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (285), Expect = 3.41e-31
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPDH 60
          MK  GLFAA+ A+AS   LSAP SSAG+ KTTFSHQEKV +RDEE SPSR SPPSTAPD 
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 78
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

BLAST of Csor.00g232570 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 114 bits (284), Expect = 4.58e-31
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEEIS-PSRRSPPSTAPDH 60
          MK  GLFAA+ A+AS   LSAPPSSAG+ KTTFSHQE+V RD+EI+ PSRRSPPSTA + 
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSAGILKTTFSHQEQVTRDQEITTPSRRSPPSTAAEQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 78
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

BLAST of Csor.00g232570 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109 bits (273), Expect = 2.31e-29
Identity = 61/79 (77.22%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPDH 60
          MK  GLFAA+ A+AS   LSAP SS G+ KTTFSHQEKV +RDEE SPSR SPPSTA D 
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 78
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

BLAST of Csor.00g232570 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.65e-31
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEISPSRRSPPSTAPDH 60
          MK  GLFAA+ A+AS   LSAP SSAG+ KTTFSHQEKV +RDEE SPSR SPPSTAPD 
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 78
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

BLAST of Csor.00g232570 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 109 bits (272), Expect = 1.59e-29
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKVN-RDEEISPSRRSPPSTAPDH 60
          MK  GLFAA+ A+AS   LSAP SSAG+ KTTFSHQEKV  RDEE SPSR SPPSTA D 
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 78
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

BLAST of Csor.00g232570 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 6.11e-29
Identity = 59/79 (74.68%), Postives = 64/79 (81.01%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKVNRDEE-ISPSRRSPPSTAPDH 60
          MK  GLFAA+ A+AS   LSAPP+S GL KT FS QEKV RDEE  +P+RRSPPSTA D 
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 78
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

BLAST of Csor.00g232570 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.48e-27
Identity = 60/80 (75.00%), Postives = 64/80 (80.00%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSHQEKV-NRDEEIS-PSRRSPPSTAPD 60
          MK  GLFAA+ A+AS   LSAPPSS    KT FSHQEKV  RDEEI+ P+RRSPPSTA D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 HFAPRFDGLRFIETLVTAHR 78
           FAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

BLAST of Csor.00g232570 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.35e-12
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGL--HKTTFSHQEKV-NRDEEISPSRRSPPSTAP 60
          MK +G FAA+ A+AS   +SAP SS  L   K   S  E V  +D E S S+RS   ++ 
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQRS---SSA 60

Query: 61 DHFAPRFDGLRFIETLVTAHR 78
          D FAPRFDGLRFIETLVTAHR
Sbjct: 61 DRFAPRFDGLRFIETLVTAHR 78

BLAST of Csor.00g232570 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-05
Identity = 36/84 (42.86%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 1  MKIAGLFAAAAASASTIVLSAPPSSAGLHKTTFSH---QEKVNRDEEISPSRRSPPST-- 60
          MK  G+ AA+ + A+    SA   SAG   T+ S    +  ++R E     R+   S+  
Sbjct: 1  MKKTGIIAASISVAA----SATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSED 60

Query: 61 -APDHFAPRFDGLRFIETLVTAHR 79
             + FAPRFDGLRFIETLVTAHR
Sbjct: 61 GGDEKFAPRFDGLRFIETLVTAHR 80

BLAST of Csor.00g232570 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 5.3e-05
Identity = 20/28 (71.43%), Postives = 22/28 (78.57%), Query Frame = 0

Query: 51 SPPSTAPDHFAPRFDGLRFIETLVTAHR 79
          S  +   D+F PRFDGLRFIETLVTAHR
Sbjct: 35 SRKTNGSDNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6589218.11.00e-45100.00hypothetical protein SDJN03_17783, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7022918.12.01e-4397.47hypothetical protein SDJN02_16654, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022952670.13.41e-3179.75uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet... [more]
XP_038888462.14.58e-3177.22uncharacterized protein LOC120078298 [Benincasa hispida][more]
XP_023554654.12.31e-2977.22uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1GMF41.65e-3179.75uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552... [more]
A0A6J1I0M01.59e-2978.48uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357... [more]
A0A0A0K2C16.11e-2974.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1[more]
A0A5D3C7A01.48e-2775.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E0CTD23.35e-1255.56Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT4G28290.11.1e-0542.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G42110.15.3e-0571.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..62
NoneNo IPR availablePANTHERPTHR34683:SF2EXPRESSED PROTEINcoord: 1..78
NoneNo IPR availablePANTHERPTHR34683EXPRESSED PROTEIN-RELATEDcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g232570.m01Csor.00g232570.m01mRNA