Csor.00g232170 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g232170
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr11: 14479503 .. 14480193 (-)
RNA-Seq Expression	Csor.00g232170
Synteny	Csor.00g232170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGCGAAATGCGATTTCGTGCAGAAATGAAGCTTCGGTATACAGAGAGCGAGCTCGCGGAGACTAGGGTTTGAACCATAATCACATATTTACTATGCCACTCATTGATTCAATGATTCACGAGCTGGAGCCTGCAACACTAACTGAATGGCAGCCGAGAGTGGAGGTAAGGGAAGGCGCCGCCGGTAGGATAGTGGGCCTAAAGTTGAGCTTCTTTTTCAAATGGGCTATAAAGAACAAGGTTAAACCCCAATTCTACTGGGAGTTTAGTTAGACTTGGTTGGTCAACTGGGCCAGAAATGGTACGGTAAAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTTGGTTGGCCAAATGGGCCAGAAAATTGTACGGTAAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTGGTGGCCCAATGGGCCAGAAAATGGTACGATAAAAGCCCAAGTTCAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTGGTGGCCCAATGGGCCAGAAATTGTACGATAAAAGCCCAAGTTCAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTTGGTTGGCCAAATGGGCCAGAAATGGTATGGTAAAAAGCCCAAGTTTACGCTCTAAGGTTAATTGGGCTTACCTAAAGTCCAAATTTCTCCGAGATATGATAGAAACTGCAAAATAA

mRNA sequence

ATGCCTCGCGAAATGCGATTTCGTGCAGAAATGAAGCTTCGGTATACAGAGAGCGAGCTCGCGGAGACTAGGAAATGGTACGGTAAAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTTGGTTGGCCAAATGGGCCAGAAAATTGTACGGTAAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTGGTGGCCCAATGGGCCAGAAAATGGTACGATAAAAGCCCAAGTTCAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTGGTGGCCCAATGGGCCAGAAATTGTACGATAAAAGCCCAAGTTCAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTTGGTTGGCCAAATGGGCCAGAAATGGTATGGTAAAAAGCCCAAGTTTACGCTCTAAGGTTAATTGGGCTTACCTAAAGTCCAAATTTCTCCGAGATATGATAGAAACTGCAAAATAA

Coding sequence (CDS)

ATGCCTCGCGAAATGCGATTTCGTGCAGAAATGAAGCTTCGGTATACAGAGAGCGAGCTCGCGGAGACTAGGAAATGGTACGGTAAAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTTGGTTGGCCAAATGGGCCAGAAAATTGTACGGTAAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTGGTGGCCCAATGGGCCAGAAAATGGTACGATAAAAGCCCAAGTTCAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTGGTGGCCCAATGGGCCAGAAATTGTACGATAAAAGCCCAAGTTCAAAGCCCAATCCTACCGGAGAGTTTAGCTGGACTTGGTTGGCCAAATGGGCCAGAAATGGTATGGTAAAAAGCCCAAGTTTACGCTCTAAGGTTAATTGGGCTTACCTAAAGTCCAAATTTCTCCGAGATATGATAGAAACTGCAAAATAA

Protein sequence

MPREMRFRAEMKLRYTESELAETRKWYGKKPNPTGEFSWTWLAKWARKLYGKSPILPESLAGLVAQWARKWYDKSPSSKPNPTGEFSWTGGPMGQKLYDKSPSSKPNPTGEFSWTWLAKWARNGMVKSPSLRSKVNWAYLKSKFLRDMIETAK

Homology

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BLAST of Csor.00g232170 vs. NCBI nr
Match: KAG6589258.1 (hypothetical protein SDJN03_17823, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 327 bits (839), Expect = 2.39e-113
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MPREMRFRAEMKLRYTESELAETRKWYGKKPNPTGEFSWTWLAKWARKLYGKSPILPESL 60
           MPREMRFRAEMKLRYTESELAETRKWYGKKPNPTGEFSWTWLAKWARKLYGKSPILPESL
Sbjct: 1   MPREMRFRAEMKLRYTESELAETRKWYGKKPNPTGEFSWTWLAKWARKLYGKSPILPESL 60

Query: 61  AGLVAQWARKWYDKSPSSKPNPTGEFSWTGGPMGQKLYDKSPSSKPNPTGEFSWTWLAKW 120
           AGLVAQWARKWYDKSPSSKPNPTGEFSWTGGPMGQKLYDKSPSSKPNPTGEFSWTWLAKW
Sbjct: 61  AGLVAQWARKWYDKSPSSKPNPTGEFSWTGGPMGQKLYDKSPSSKPNPTGEFSWTWLAKW 120

Query: 121 ARNGMVKSPSLRSKVNWAYLKSKFLRDMIETAK 153
           ARNGMVKSPSLRSKVNWAYLKSKFLRDMIETAK
Sbjct: 121 ARNGMVKSPSLRSKVNWAYLKSKFLRDMIETAK 153

The following BLAST results are available for this feature:

BLAST of Csor.00g232170 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g232170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589258.1	2.39e-113	100.00	hypothetical protein SDJN03_17823, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g232170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g232170 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g232170.m01	Csor.00g232170.m01	mRNA