Csor.00g230670 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g230670
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Small nuclear ribonucleoprotein Sm D1
Location	Csor_Chr08: 4253389 .. 4254948 (-)
RNA-Seq Expression	Csor.00g230670
Synteny	Csor.00g230670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGCCTCAGGAGTTGGTGAATATTGATTAGATTGCATTAAGAAGTAGGATGTTATTTTCTCTACTTCCGGAAAGAGCCAATGGAAGGAAAGTCCAACTCCCTTTTATTGGGTGCTTCCACTTTAACGTATCTCTCTATGCGGCTGCTACTGAAACTAGTTATTTTACTCACAGAGTCGTTTCTCACAAGATGCCTTTATGGGAGAATTGGGACTCAATTTCATAATTTTAGTTGGTTACCTCTTTTGTGGGAGGATTTCAACTGAGATTATAAACAATGTTTTAAAAAGCTAAAGGCAGCCTTGAGACTTTTCCTCCGGTGGAGGCGAGGTGAAAGCCTCAAGGTGATATGAAGCATAAGACTAATTTAATTAATTTTTTTTTTTTTACCAACAAACTTAGTAATCATAAAAAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATGAAGCATGGACACATATGTCCGGACATGCTTTGGCCATGCTATACATGGCTAGACACACCTCTAGATAATATTTAACCCATAAAATAGGGGAAATTTTGAGATTTTCTTATAGATTGAATCTTTAAATATTGATCAATCCTAAAGTATTAGGATGACATGTTCATCCTCTTGCAGCTAACTAATCTTTTTATATGTTTTAAGGTTTCAAATATTGTTAGTTGACTTAACTATGGATGTTTTTAGTGAAGCATATTTTATTTTATGTTTATTCACATTTTATCTATGAAAAAAAAAAAAAATACTAATATACCTATATCGACACATATTTTATATAAAAAAAACTTGTCCCGAAGGTGCTTGTTGCTACTTTTTAAGAATTTGATGTGTCTCAGTGTTTATATCATTGTCTGTATCTGTGCTTCTTAGATCATTCATGTCAATTGCACCTAAACATAAACTCTAAAGTGATATCTTTAACGTCACTACTATTATCATTGAGAGGAATCACTGTTTGGTTGATTTTGAGTGATTCTTTTGTGTTTCATAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAGAAACCAAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTCTGCGAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTAAGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

mRNA sequence

ATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGCCTCAGGAGTTGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAGAAACCAAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTCTGCGAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTAAGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

Coding sequence (CDS)

ATGGAAGGGAAGTCCAACTCCCTTTTAATGGGTGCCTCAGGAGTTGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAGCTTACTCTAAAGGGTAAAAATCCAGTCACCATGGATCATTTAAGTGTGAGGGGCAACAACATCAGATATTATATTCTACCTGACAGCTTGAATCTCGAGACTTTACTTGTTGAAGAGACACCGAGGGTCAAGCCGAGAAACCAAACTGCAGGTACGTGTTGTCCTTGTATTCATGCCTATACTTATGGTCATTTCTGCGAATCAACTTGTGTATACCGAATCATATACTACCCATTATCAAATGTGTTGCTTAAGCATTTCTACACTCTACTGCAACTACAGGGAAGCCTATGGGACGTGGACGAGGACGTGGACGTGGGCGCGGTCGTGGTCGTGGACGCTAGATTTGTTGCAGTTGTTTCAAGTTTTGAGACCGGTAGTGTAAACACTTGTATTGTAGCGAAGGATTCTGAATTTAGTGACGGTATAGCAATTCACTGCTCAATCTCATGTGTTTATTACAACGTTATCCAGTTGTTTTTCTATGATTGA

Protein sequence

MEGKSNSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPRNQTAGTCCPCIHAYTYGHFCESTCVYRIIYYPLSNVLLKHFYTLLQLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISCVYYNVIQLFFYD

Homology

[Close]

BLAST of Csor.00g230670 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.2e-28
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAG 81
          VE+TPR+KP+  TAG
Sbjct: 81 VEDTPRIKPKKPTAG 95

[Close]

BLAST of Csor.00g230670 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.6e-26
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAG 81
          VE+TPRVKP+   AG
Sbjct: 81 VEDTPRVKPKKPVAG 95

[Close]

BLAST of Csor.00g230670 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 16 GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPR 75
          GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK +
Sbjct: 31 GVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSK 90

Query: 76 NQTA 80
           + A
Sbjct: 91 KREA 94

[Close]

BLAST of Csor.00g230670 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 16 GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPR 75
          GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK +
Sbjct: 31 GVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSK 90

Query: 76 NQTA 80
           + A
Sbjct: 91 KREA 94

[Close]

BLAST of Csor.00g230670 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 16 GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPR 75
          GVD+SMNTHLKAVK+TLK + PV ++ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK +
Sbjct: 31 GVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSK 90

Query: 76 NQTA 80
           + A
Sbjct: 91 KREA 94

[Close]

BLAST of Csor.00g230670 vs. NCBI nr
Match: KAG6593429.1 (Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 386 bits (992), Expect = 2.16e-135
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MEGKSNSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLN 60
           MEGKSNSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLN
Sbjct: 1   MEGKSNSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLN 60

Query: 61  LETLLVEETPRVKPRNQTAGTCCPCIHAYTYGHFCESTCVYRIIYYPLSNVLLKHFYTLL 120
           LETLLVEETPRVKPRNQTAGTCCPCIHAYTYGHFCESTCVYRIIYYPLSNVLLKHFYTLL
Sbjct: 61  LETLLVEETPRVKPRNQTAGTCCPCIHAYTYGHFCESTCVYRIIYYPLSNVLLKHFYTLL 120

Query: 121 QLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISC 180
           QLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISC
Sbjct: 121 QLQGSLWDVDEDVDVGAVVVVDARFVAVVSSFETGSVNTCIVAKDSEFSDGIAIHCSISC 180

Query: 181 VYYNVIQLFFYD 192
           VYYNVIQLFFYD
Sbjct: 181 VYYNVIQLFFYD 192

[Close]

BLAST of Csor.00g230670 vs. NCBI nr
Match: RZB54124.1 (Small nuclear ribonucleoprotein SmD1b [Glycine soja])

HSP 1 Score: 134 bits (336), Expect = 3.24e-36
Identity = 72/131 (54.96%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 6   NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
           N  ++  +  GVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21  NGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66  VEETPRVKPRNQTAGTCCPCIHAYTYGHFCESTCVYRIIYYPLSNVLLKHFYTLLQLQGS 125
           VEETP++KP+  TAG                           + N+   HF      QG+
Sbjct: 81  VEETPKIKPKKPTAGL--------------------------IFNIFSSHF------QGN 119

Query: 126 LWDVDEDVDVG 136
           LWDVDE+  VG
Sbjct: 141 LWDVDEEGAVG 119

[Close]

BLAST of Csor.00g230670 vs. NCBI nr
Match: VVA13992.1 (PREDICTED: small nuclear [Prunus dulcis])

HSP 1 Score: 129 bits (323), Expect = 8.47e-35
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTIVNGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAGT 81
          VEETPRVKP+  TAGT
Sbjct: 81 VEETPRVKPKKPTAGT 96

[Close]

BLAST of Csor.00g230670 vs. NCBI nr
Match: VVA13990.1 (PREDICTED: small nuclear [Prunus dulcis])

HSP 1 Score: 129 bits (323), Expect = 1.14e-34
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTIVNGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAGT 81
          VEETPRVKP+  TAGT
Sbjct: 81 VEETPRVKPKKPTAGT 96

[Close]

BLAST of Csor.00g230670 vs. NCBI nr
Match: XP_038896756.1 (small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida] >XP_038897024.1 small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida])

HSP 1 Score: 128 bits (322), Expect = 1.16e-34
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 14 NGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 73

Query: 66 VEETPRVKPRNQTAG 80
          VEETPRVKP+  TAG
Sbjct: 74 VEETPRVKPKKPTAG 88

[Close]

BLAST of Csor.00g230670 vs. ExPASy TrEMBL
Match: A0A445FZD7 (Small nuclear ribonucleoprotein Sm D1 OS=Glycine soja OX=3848 GN=D0Y65_049854 PE=3 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.57e-36
Identity = 72/131 (54.96%), Postives = 83/131 (63.36%), Query Frame = 0


Query: 6   NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
           N  ++  +  GVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21  NGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66  VEETPRVKPRNQTAGTCCPCIHAYTYGHFCESTCVYRIIYYPLSNVLLKHFYTLLQLQGS 125
           VEETP++KP+  TAG                           + N+   HF      QG+
Sbjct: 81  VEETPKIKPKKPTAGL--------------------------IFNIFSSHF------QGN 119

Query: 126 LWDVDEDVDVG 136
           LWDVDE+  VG
Sbjct: 141 LWDVDEEGAVG 119

[Close]

BLAST of Csor.00g230670 vs. ExPASy TrEMBL
Match: A0A5E4EEZ2 (Small nuclear ribonucleoprotein Sm D1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B012076 PE=3 SV=1)

HSP 1 Score: 129 bits (323), Expect = 4.10e-35
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTIVNGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAGT 81
          VEETPRVKP+  TAGT
Sbjct: 81 VEETPRVKPKKPTAGT 96

[Close]

BLAST of Csor.00g230670 vs. ExPASy TrEMBL
Match: A0A6N2KM55 (Small nuclear ribonucleoprotein Sm D1 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS109184 PE=3 SV=1)

HSP 1 Score: 129 bits (325), Expect = 4.60e-35
Identity = 63/77 (81.82%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 4   KSNSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLET 63
           KS + L+   G GVDISMNTHLK VKLT+KGKNPVT+DHLSVRGNNIRYYILPDSLNLET
Sbjct: 39  KSEANLLPREGFGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGNNIRYYILPDSLNLET 98

Query: 64  LLVEETPRVKPRNQTAG 80
           LLVEETPRVKP+  TAG
Sbjct: 99  LLVEETPRVKPKKPTAG 115

[Close]

BLAST of Csor.00g230670 vs. ExPASy TrEMBL
Match: A0A5E4EGA7 (Small nuclear ribonucleoprotein Sm D1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B012076 PE=3 SV=1)

HSP 1 Score: 129 bits (323), Expect = 5.54e-35
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVDISMNTHLK VKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTIVNGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAGT 81
          VEETPRVKP+  TAGT
Sbjct: 81 VEETPRVKPKKPTAGT 96

[Close]

BLAST of Csor.00g230670 vs. ExPASy TrEMBL
Match: A0A6J1DVC4 (Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC111024391 PE=3 SV=1)

HSP 1 Score: 128 bits (322), Expect = 6.95e-35
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAG 80
          VEETPRVKP+  TAG
Sbjct: 81 VEETPRVKPKKPTAG 95

[Close]

BLAST of Csor.00g230670 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 125.6 bits (314), Expect = 4.4e-29
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAG 81
          VE+TPR+KP+  TAG
Sbjct: 81 VEDTPRIKPKKPTAG 95

[Close]

BLAST of Csor.00g230670 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-29
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 16  GVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPR 75
           GVD+SMNTHLKAVKLTLKGKNPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KP+
Sbjct: 41  GVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPK 100

Query: 76  NQTAG 81
             TAG
Sbjct: 101 KPTAG 105

[Close]

BLAST of Csor.00g230670 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 118.6 bits (296), Expect = 5.4e-27
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAG 81
          VE+TPRVKP+   AG
Sbjct: 81 VEDTPRVKPKKPVAG 95

[Close]

BLAST of Csor.00g230670 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 118.6 bits (296), Expect = 5.4e-27
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 6  NSLLMGASGVGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLL 65
          N  ++  +  GVD+SMNTHLK VK++LKGKNPVT+DHLS+RGNNIRYYILPDSLNLETLL
Sbjct: 21 NGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLL 80

Query: 66 VEETPRVKPRNQTAG 81
          VE+TPRVKP+   AG
Sbjct: 81 VEDTPRVKPKKPVAG 95

The following BLAST results are available for this feature:

BLAST of Csor.00g230670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY09	6.2e-28	78.67	Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P...	[more]
Q9SSF1	7.6e-26	73.33	Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P...	[more]
Q3ZC10	1.0e-17	65.63	Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1	[more]
P62314	1.0e-17	65.63	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=...	[more]
Q4R5F6	1.0e-17	65.63	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P...	[more]

BLAST of Csor.00g230670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6593429.1	2.16e-135	100.00	Small nuclear ribonucleoprotein SmD1b, partial [Cucurbita argyrosperma subsp. so...	[more]
RZB54124.1	3.24e-36	54.96	Small nuclear ribonucleoprotein SmD1b [Glycine soja]	[more]
VVA13992.1	8.47e-35	81.58	PREDICTED: small nuclear [Prunus dulcis]	[more]
VVA13990.1	1.14e-34	81.58	PREDICTED: small nuclear [Prunus dulcis]	[more]
XP_038896756.1	1.16e-34	84.00	small nuclear ribonucleoprotein SmD1b isoform X2 [Benincasa hispida] >XP_0388970...	[more]

BLAST of Csor.00g230670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445FZD7	1.57e-36	54.96	Small nuclear ribonucleoprotein Sm D1 OS=Glycine soja OX=3848 GN=D0Y65_049854 PE...	[more]
A0A5E4EEZ2	4.10e-35	81.58	Small nuclear ribonucleoprotein Sm D1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B01207...	[more]
A0A6N2KM55	4.60e-35	81.82	Small nuclear ribonucleoprotein Sm D1 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS1...	[more]
A0A5E4EGA7	5.54e-35	81.58	Small nuclear ribonucleoprotein Sm D1 OS=Prunus dulcis OX=3755 GN=ALMOND_2B01207...	[more]
A0A6J1DVC4	6.95e-35	84.00	Small nuclear ribonucleoprotein Sm D1 OS=Momordica charantia OX=3673 GN=LOC11102...	[more]

BLAST of Csor.00g230670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02840.1	4.4e-29	78.67	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	5.8e-29	89.23	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.1	5.4e-27	73.33	Small nuclear ribonucleoprotein family protein	[more]
AT3G07590.2	5.4e-27	73.33	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 15..54 e-value: 1.7E-6 score: 27.6
None	No IPR available	GENE3D	2.30.30.100		coord: 4..70 e-value: 7.4E-18 score: 65.9
None	No IPR available	PANTHER	PTHR23338:SF48	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1	coord: 12..82
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 12..82
IPR034102	Small nuclear ribonucleoprotein D1	CDD	cd01724	Sm_D1	coord: 15..75 e-value: 4.64581E-41 score: 132.349
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 15..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g230670.m01	Csor.00g230670.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0006396	RNA processing
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0000243	commitment complex
cellular_component	GO:0034715	pICln-Sm protein complex
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
molecular_function	GO:0003723	RNA binding