Csor.00g230220 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g230220
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 3507142 .. 3509664 (+)
RNA-Seq ExpressionCsor.00g230220
SyntenyCsor.00g230220
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCGGTTAGGGAAGAATCAGCAAGGCATAACAGAAATACCAGAATACCCTACCTGACGACGGGAAAGGATACGCTCCTTCGAAGGAAGATCAAAGGGAGCGAGAGGAAAGAATCCAAAGTTGGGTCTTGGCCAAAAAGAATGGTGAGACTTTTGATTGGAAAATGCGCTCCTACTTCAAAACCCTTAACGGTTACTTTGTCAAGGGGCAGATTTCCTTTTTGGGGCTTTCCTGAGCCTTGGTATTGCCCTACTACTTAACTTCAAAGAGAATGAATGCCGGGGGTTGAAATCTTCTTCGATACCAGCCTCAAGCTAGAAGACTGTGAGCCGGTCCAGCTGATGGAAAAGGATTGATTGGGAAGAGAACATGGATGCATCTCTCTTTGAGAATGTTTATGTCTTTGAAGATGGGAAATTGAGCCAATAGGGTTGATTCGGTCTTCCACTCCAGAATTGGTACCTCGCGGAAGAGTCCAGACCCATGCATCTAGAGTCAGAACCAGAGTCCGAGTCTGAAACCGAGTCAGAGTCTGAGTACAACTCTTCCTTGTATCAGTCTGAGTCTGCTAGTCAATCTCCTTTCTTTTAAAGAGGTGATCAACCTCTTCTTCCTTTTACCCTTTGAACAAGGTCTCTCAGTAAGCAAATATTGGGTGGGCTACAGCCTCTTTCTTTTCTTTTCCGAAGAAGCTACAGCTTTTGAATCGAAGCCAGGTCACTCTTTCTAAAGAAAGAGAAGAAAATCAGATTATGAGAATGAAATCTTCGTCTTCCGGGATTCTCTTTTCTAAGTGCCGCGCTTACTCAATGCCAAACCAATGAAAAGAGTCGTCCTAGTCCACCACAGCTGAATGCGTACTTTTCTAGTTAGCCCGCCGACAGAGAAGGAAAGAAAGCAAAATGACTTGCTTCAACTGAAGAAAGGAATGTCCCATGACTCAGGCATGAGCTTGCTGCGGATTCGGCGATAAGAACTGACTCGGCGACAGCGAGGTTTGAAATCAGTCTTTGATCTTGCACTTTCATTTCAAGTAGTGCTTGAGAGAGGAAATGGCAAAGCCAAGAACCAAGCTGACTGAATGAATGAAAGCTAACAATTTCATTGCCTCACAGCCTGAATGCCTGCTTCCCGCTCCGAACCTGGATGACTGAATTTCCTGTGCCCTATTCACTCTCTTCCTTCTCATTCATTGATCTAAACCAACTCTTGCTTGAAAGGACAGTTAGTTGAATTAATAAGGTGCTCCAACTCAAAACAGAACCTTTCGCAACACGCCGATATCTTTCAACCAAGGATGAGTTCGATCCATTAGTTCTTCTGTATGGCTTCTTTTTCTATTTAGTGGAAAGCCTGGTTTAAGCTGGGGTGTACCCATTTTCTTCATACTCGATAGGATAGAAGGGCCGATAAAGAAAGAAAGGTCAGTCGGCGAGCCCTACGGCTATTTATTCAAAAAAGAGATTGCCACTGCCTTCTTAAGAGTTAGTTATATTCCGCGAAAGCTTCTTCTACAGATTCCACAAGAAAGGGTTCGGATCATTAGGCTTTGCCCAACCCCCCCTCAGGGATCGCGGAGTCAGGTAGATCAACAACTTGTACTCCTGGAAAAAAAGATCCCATCACTAAACCTCAGAATATCCCATCCGAGGTCTTAGTCGAGACTTGGCTTTACGCCCTTTGGTCTTTCATTTTGCGTTTTAGTCAAATGTCTCCGGCTGCTGCAAGGCTATCTTTCTTTCATTCCAATTTTCAATGATTGACATTCCTCTGTATTCTGTTGTGCTCAGCGAACGGATAAAGCCCAGCAGGATGGGAAGTCGCATCTCTTTCGGAGTGGAATCGGGAATCCTACTCTAAATCAGAATCGAATCACGCGCTCTCAGAGAACGAAAGACTCCATAGCCTGCCTATACTACAAAAGTTGGTAAAGCCATCCTGTACTACATCCGTAAGCCTTCCATGTATTGCATTCGTTCGTCAGGGAATGTGTACTAGCCCCTATTGGAACTACAATCAGGGTATTCGACTTCTACGTACAAGTGGACCAGCCAGTCCGTCCGTATGGTAATTGATTACGTATTCTTAGCCGTCCTAGCTTTCCCATTTCTCTGTCCTAACAGCGTTCTCAGCCCTTGCTTTAGATTCTTTCTTTCCTATCTCTTGAGTGTGGTATGAGTCTAAGTGTATTAGTGGTGTATAAAGAATTTGCTTCCGTCTTTTGTGTAATCAGATTCTACTTGATTTGATTTGCCAAGGAAGAACGAAAAGGATTCTTGCAAGCGGGCAAACTTGAGCTTTTTCTTCCATCCTGCTTTTCTATCCAGGATCTAGCCGGATTCGCAGCTGATGCCAACAACGCTCTGGCTGCAGGTCGCTTTAGGTTTCATTCCAACACCTCAGTGTGTTGCAAGGGTGATAGATCCGCTTCGGGAGAGGTCCCCAAAGAAAGATCCGATCTGTCCTCCAGACTGCGCTTTCGCATACCCGGAAGAGATTTGAATGAAGACTCTTTCTAG

mRNA sequence

ATGCTTGCGGTTAGGGAAGAATCAGCAAGGCATAACAGAAATACCAGAATACCCTACCTGACGACGGGAAAGGATACGCTCCTTCGAAGGAAGATCAAAGGGAGCGAGAGGAAAGAATCCAAAGTTGGGTCTTGGCCAAAAAGAATGGTGAGACTTTTGATTGGAAAATGCGCTCCTACTTCAAAACCCTTAACGGTTACTTTGTCAAGGGGCAGATTTCCTTTTTGGGGCTTTCCTGAGCCTTGGCATGAGCTTGCTGCGGATTCGGCGATAAGAACTGACTCGGCGACAGCGAGGATAGAAGGGCCGATAAAGAAAGAAAGGTCAGTCGGCGAGCCCTACGGCTATTTATTCAAAAAAGAGATTGCCACTGCCTTCTTAAGAGTTAGTTATATTCCGCGAAAGCTTCTTCTACAGATTCCACAAGAAAGGGTTCGGATCATTAGGCTTTGCCCAACCCCCCCTCAGGGATCGCGGAGTCAGCGAACGGATAAAGCCCAGCAGGATGGGAAGTCGCATCTCTTTCGGAGTGGAATCGGGAATCCTACTCTAAATCAGAATCGAATCACGCGCTCTCAGAGAACGAAAGACTCCATAGCCTGCCTATACTACAAAAGGTATTCGACTTCTACGTACAAGTGGACCAGCCAGTCCGTCCGTATGGTAATTGATTACGTATTCTTAGCCGTCCTAGCTTTCCCATTTCTCTGTCCTAACAGCGTTCTCAGCCCTTGCTTTAGATTCTTTCTTTCCTATCTCTTGAGTGTGGAAGAACGAAAAGGATTCTTGCAAGCGGGCAAACTTGAGCTTTTTCTTCCATCCTGCTTTTCTATCCAGGATCTAGCCGGATTCGCAGCTGATGCCAACAACGCTCTGGCTGCAGGTCGCTTTAGGTTTCATTCCAACACCTCAGTGTGTTGCAAGGGTGATAGATCCGCTTCGGGAGAGGTCCCCAAAGAAAGATCCGATCTGTCCTCCAGACTGCGCTTTCGCATACCCGGAAGAGATTTGAATGAAGACTCTTTCTAG

Coding sequence (CDS)

ATGCTTGCGGTTAGGGAAGAATCAGCAAGGCATAACAGAAATACCAGAATACCCTACCTGACGACGGGAAAGGATACGCTCCTTCGAAGGAAGATCAAAGGGAGCGAGAGGAAAGAATCCAAAGTTGGGTCTTGGCCAAAAAGAATGGTGAGACTTTTGATTGGAAAATGCGCTCCTACTTCAAAACCCTTAACGGTTACTTTGTCAAGGGGCAGATTTCCTTTTTGGGGCTTTCCTGAGCCTTGGCATGAGCTTGCTGCGGATTCGGCGATAAGAACTGACTCGGCGACAGCGAGGATAGAAGGGCCGATAAAGAAAGAAAGGTCAGTCGGCGAGCCCTACGGCTATTTATTCAAAAAAGAGATTGCCACTGCCTTCTTAAGAGTTAGTTATATTCCGCGAAAGCTTCTTCTACAGATTCCACAAGAAAGGGTTCGGATCATTAGGCTTTGCCCAACCCCCCCTCAGGGATCGCGGAGTCAGCGAACGGATAAAGCCCAGCAGGATGGGAAGTCGCATCTCTTTCGGAGTGGAATCGGGAATCCTACTCTAAATCAGAATCGAATCACGCGCTCTCAGAGAACGAAAGACTCCATAGCCTGCCTATACTACAAAAGGTATTCGACTTCTACGTACAAGTGGACCAGCCAGTCCGTCCGTATGGTAATTGATTACGTATTCTTAGCCGTCCTAGCTTTCCCATTTCTCTGTCCTAACAGCGTTCTCAGCCCTTGCTTTAGATTCTTTCTTTCCTATCTCTTGAGTGTGGAAGAACGAAAAGGATTCTTGCAAGCGGGCAAACTTGAGCTTTTTCTTCCATCCTGCTTTTCTATCCAGGATCTAGCCGGATTCGCAGCTGATGCCAACAACGCTCTGGCTGCAGGTCGCTTTAGGTTTCATTCCAACACCTCAGTGTGTTGCAAGGGTGATAGATCCGCTTCGGGAGAGGTCCCCAAAGAAAGATCCGATCTGTCCTCCAGACTGCGCTTTCGCATACCCGGAAGAGATTTGAATGAAGACTCTTTCTAG

Protein sequence

MLAVREESARHNRNTRIPYLTTGKDTLLRRKIKGSERKESKVGSWPKRMVRLLIGKCAPTSKPLTVTLSRGRFPFWGFPEPWHELAADSAIRTDSATARIEGPIKKERSVGEPYGYLFKKEIATAFLRVSYIPRKLLLQIPQERVRIIRLCPTPPQGSRSQRTDKAQQDGKSHLFRSGIGNPTLNQNRITRSQRTKDSIACLYYKRYSTSTYKWTSQSVRMVIDYVFLAVLAFPFLCPNSVLSPCFRFFLSYLLSVEERKGFLQAGKLELFLPSCFSIQDLAGFAADANNALAAGRFRFHSNTSVCCKGDRSASGEVPKERSDLSSRLRFRIPGRDLNEDSF
Homology
[Close]
BLAST of Csor.00g230220 vs. NCBI nr
Match: KAG6570995.1 (hypothetical protein SDJN03_29910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 686 bits (1770), Expect = 5.76e-249
Identity = 342/342 (100.00%), Postives = 342/342 (100.00%), Query Frame = 0 

Query: 1   MLAVREESARHNRNTRIPYLTTGKDTLLRRKIKGSERKESKVGSWPKRMVRLLIGKCAPT 60
           MLAVREESARHNRNTRIPYLTTGKDTLLRRKIKGSERKESKVGSWPKRMVRLLIGKCAPT
Sbjct: 1   MLAVREESARHNRNTRIPYLTTGKDTLLRRKIKGSERKESKVGSWPKRMVRLLIGKCAPT 60

Query: 61  SKPLTVTLSRGRFPFWGFPEPWHELAADSAIRTDSATARIEGPIKKERSVGEPYGYLFKK 120
           SKPLTVTLSRGRFPFWGFPEPWHELAADSAIRTDSATARIEGPIKKERSVGEPYGYLFKK
Sbjct: 61  SKPLTVTLSRGRFPFWGFPEPWHELAADSAIRTDSATARIEGPIKKERSVGEPYGYLFKK 120

Query: 121 EIATAFLRVSYIPRKLLLQIPQERVRIIRLCPTPPQGSRSQRTDKAQQDGKSHLFRSGIG 180
           EIATAFLRVSYIPRKLLLQIPQERVRIIRLCPTPPQGSRSQRTDKAQQDGKSHLFRSGIG
Sbjct: 121 EIATAFLRVSYIPRKLLLQIPQERVRIIRLCPTPPQGSRSQRTDKAQQDGKSHLFRSGIG 180

Query: 181 NPTLNQNRITRSQRTKDSIACLYYKRYSTSTYKWTSQSVRMVIDYVFLAVLAFPFLCPNS 240
           NPTLNQNRITRSQRTKDSIACLYYKRYSTSTYKWTSQSVRMVIDYVFLAVLAFPFLCPNS
Sbjct: 181 NPTLNQNRITRSQRTKDSIACLYYKRYSTSTYKWTSQSVRMVIDYVFLAVLAFPFLCPNS 240

Query: 241 VLSPCFRFFLSYLLSVEERKGFLQAGKLELFLPSCFSIQDLAGFAADANNALAAGRFRFH 300
           VLSPCFRFFLSYLLSVEERKGFLQAGKLELFLPSCFSIQDLAGFAADANNALAAGRFRFH
Sbjct: 241 VLSPCFRFFLSYLLSVEERKGFLQAGKLELFLPSCFSIQDLAGFAADANNALAAGRFRFH 300

Query: 301 SNTSVCCKGDRSASGEVPKERSDLSSRLRFRIPGRDLNEDSF 342
           SNTSVCCKGDRSASGEVPKERSDLSSRLRFRIPGRDLNEDSF
Sbjct: 301 SNTSVCCKGDRSASGEVPKERSDLSSRLRFRIPGRDLNEDSF 342

[Close]
BLAST of Csor.00g230220 vs. NCBI nr
Match: KAG6577416.1 (hypothetical protein SDJN03_24990, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261 bits (666), Expect = 5.38e-84
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0 

Query: 208 STSTYKWTSQSVRMVIDYVFLAVLAFPFLCPNSVLSPCFRFFLSYLLSVEERKGFLQAGK 267
           STSTYKWTSQS+ +VIDYVFLAVLAF FLCPN+V SPCFRFFLSYLLS+EERKGFLQAGK
Sbjct: 14  STSTYKWTSQSICLVIDYVFLAVLAFQFLCPNNVRSPCFRFFLSYLLSMEERKGFLQAGK 73

Query: 268 LELFLPSCFSIQDLAGFAADANNALAAGRFRFHSNTSVCCKGDRSASGEVPKERSDLSSR 327
           LELFLP CFSIQDLAGFAADANNALAAGRFRFHSNTSVCCKGDRSASGEVPKERSDLSSR
Sbjct: 74  LELFLPCCFSIQDLAGFAADANNALAAGRFRFHSNTSVCCKGDRSASGEVPKERSDLSSR 133

Query: 328 LRFRIPGRDLNEDSF 342
           LRFRIPGRDLNEDSF
Sbjct: 134 LRFRIPGRDLNEDSF 148

[Close]
BLAST of Csor.00g230220 vs. NCBI nr
Match: KAG6590430.1 (hypothetical protein SDJN03_15853, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 192 bits (487), Expect = 7.03e-56
Identity = 101/129 (78.29%), Postives = 107/129 (82.95%), Query Frame = 0 

Query: 216 SQSVRMVIDYVFLAVLAFPFLCPNSVLSPCFRFFLSYLLSVEERKGFLQAGKLELFLPSC 275
           S S R+VIDYVF  VLAF FLCPNSV SPCFRFFLSYLLSVEERKGFLQAGKLELFLP  
Sbjct: 99  SPSDRLVIDYVFKVVLAFQFLCPNSVRSPCFRFFLSYLLSVEERKGFLQAGKLELFLPCY 158

Query: 276 FSIQDLAGFAADANNALAAGRFRFHSNTSVCCKGDRSASGEVPKERSDLSSRLRFRIP-- 335
           FSI DLAGF ADANNALAAGRFRFHSNTSVCCKGDRSASG+   +R  + S L+  +   
Sbjct: 159 FSIPDLAGFEADANNALAAGRFRFHSNTSVCCKGDRSASGDYGPQRK-IRSVLQTALSHT 218

Query: 336 GRDLNEDSF 342
           GRDLNEDSF
Sbjct: 219 GRDLNEDSF 226

[Close]
BLAST of Csor.00g230220 vs. NCBI nr
Match: KAG6590432.1 (hypothetical protein SDJN03_15855, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 187 bits (475), Expect = 4.70e-54
Identity = 121/231 (52.38%), Postives = 139/231 (60.17%), Query Frame = 0 

Query: 95  SATARIEG--PIKKERSVG-EPYGYLFKKEIATAFLRVSYIPRKLLLQIPQERVRIIRLC 154
           S+T RI+     K+ERSVG EPYGYLFKKEI TAFLRVSYIP+KLLLQIPQERVRIIRLC
Sbjct: 10  SSTPRIKDRRADKEERSVGGEPYGYLFKKEIVTAFLRVSYIPQKLLLQIPQERVRIIRLC 69

Query: 155 PTPPQGSRSQRTDKAQQDGKSHLFRSGIGNPTLNQNRITRSQRTKDSIACLYYKRYSTST 214
           PTPPQGS         + G      S     + ++     +    + +  LY        
Sbjct: 70  PTPPQGS--------AESGWEVTSLSEWNRESYSKLESNHALSKNERLHVLY-------- 129

Query: 215 YKWTSQSVRMVIDYVFLAVLAFPFLCPNSVLSPCFRFFLSYLLSVEERKGFLQAGKLELF 274
               S     V+  +   +     L  +   SP  R        +EERKGFLQAGKLELF
Sbjct: 130 ----SFVKECVLAPIGTPIRVIRLLRTSGPASPSDR--------LEERKGFLQAGKLELF 189

Query: 275 LPSCFSIQDLAGFAADANNALAA-GRFRFHSNTSVCCKGDRSASGEVPKER 321
           LP  FSI DLAGF ADANNALAA GRFRFHSNTSVCCKGDRSASG+   +R
Sbjct: 190 LPCYFSIPDLAGFEADANNALAAAGRFRFHSNTSVCCKGDRSASGDYGPQR 212

[Close]
BLAST of Csor.00g230220 vs. NCBI nr
Match: KAG6590428.1 (hypothetical protein SDJN03_15851, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (316), Expect = 1.97e-31
Identity = 75/137 (54.74%), Postives = 83/137 (60.58%), Query Frame = 0 

Query: 208 STSTYKWTSQSVRMVIDYVFLAVLAFPFLCPNSVLSPCFRFFLSYLLSVEERKGFLQAGK 267
           STSTYKWTSQSVR+VIDYVF AVLAF FLCPN+V SPCFRFFLS LLSV + +       
Sbjct: 39  STSTYKWTSQSVRLVIDYVFKAVLAFQFLCPNNVRSPCFRFFLSNLLSVPDSQ------- 98

Query: 268 LELFLPSCFSIQDLAGFAADANNALAAGRFRFHSNTSVCCKG--DRSASGEVPKERSDLS 327
               +P+   +Q   GF                  T  C     D      VPKERSDLS
Sbjct: 99  ---LMPTMLWLQVALGFIP----------------TPQCVARVIDLLRETMVPKERSDLS 149

Query: 328 SRLRFRIPGRDLNEDSF 342
           S+LRFRIPGRDLNEDSF
Sbjct: 159 SKLRFRIPGRDLNEDSF 149

The following BLAST results are available for this feature:
BLAST of Csor.00g230220 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g230220 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6570995.15.76e-249100.00hypothetical protein SDJN03_29910, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577416.15.38e-8494.07hypothetical protein SDJN03_24990, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590430.17.03e-5678.29hypothetical protein SDJN03_15853, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590432.14.70e-5452.38hypothetical protein SDJN03_15855, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590428.11.97e-3154.74hypothetical protein SDJN03_15851, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g230220 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g230220 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g230220.m01Csor.00g230220.m01mRNA