Csor.00g230020 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g230020
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionDUF1279 domain-containing protein
LocationCsor_Chr20: 3642407 .. 3642844 (-)
RNA-Seq ExpressionCsor.00g230020
SyntenyCsor.00g230020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTATCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

mRNA sequence

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTATCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Coding sequence (CDS)

ATGGCTTTCTTCACCGGCGGCGGCCGATTCCGCGAGCTTCTTAAGAAGTACGGGAAGGTCGCAATCGGAGTTCATTTCTCAGTATCGGCGGCTTCGATCACTGGCCTCTATGTCGCCATCAAGAACAATGTGGATGTTGAATCGCTACTCGATAAGTTACACATGGATGGATTCTCTTCCAAAGATCAGTCGCAGACTAGTCCCGATGATGGACTAGTGATCGAAGAAAGTCCTGCGTCGGATATTCAATCGACGGTGGCGCAGGAGCCGAGGACGAGGAATCGTACTGCAGAGCTTGCGGCGTCGACTGGCGGCGCGTTGGCTTTGGCCGTTCTTTGCAACAAGGCATTGCTGCCTATTCGGATTCCGATAACGATTGGGCTGACGCCGCCGATTGCGAGGATGCTGGCGAGGCGAGGGATTATGAGAAGTGGTTAA

Protein sequence

MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPIRIPITIGLTPPIARMLARRGIMRSG
Homology
BLAST of Csor.00g230020 vs. NCBI nr
Match: XP_022943842.1 (uncharacterized protein LOC111448454 [Cucurbita moschata] >KAG6571014.1 hypothetical protein SDJN03_29929, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010845.1 hypothetical protein SDJN02_27641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 272 bits (696), Expect = 8.48e-92
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 145
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

BLAST of Csor.00g230020 vs. NCBI nr
Match: XP_023513086.1 (uncharacterized protein LOC111777632 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270 bits (690), Expect = 6.98e-91
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTG ALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGSALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 145
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

BLAST of Csor.00g230020 vs. NCBI nr
Match: XP_022986110.1 (uncharacterized protein LOC111483951 [Cucurbita maxima])

HSP 1 Score: 262 bits (669), Expect = 1.41e-87
Identity = 143/152 (94.08%), Postives = 144/152 (94.74%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KDQSQTSP       DDGLVIEESPAS+ QSTVAQEPRTRNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

BLAST of Csor.00g230020 vs. NCBI nr
Match: XP_022971121.1 (uncharacterized protein LOC111469888 [Cucurbita maxima])

HSP 1 Score: 244 bits (622), Expect = 2.06e-80
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

BLAST of Csor.00g230020 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothetical protein SDJN02_11032, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (620), Expect = 4.15e-80
Identity = 132/152 (86.84%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

BLAST of Csor.00g230020 vs. ExPASy TrEMBL
Match: A0A6J1FU56 (uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC111448454 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 4.11e-92
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQSQTSPDDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIGLTPPIARMLARRGIMRSG 145
           RIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 RIPITIGLTPPIARMLARRGIMRSG 145

BLAST of Csor.00g230020 vs. ExPASy TrEMBL
Match: A0A6J1JD52 (uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951 PE=4 SV=1)

HSP 1 Score: 262 bits (669), Expect = 6.82e-88
Identity = 143/152 (94.08%), Postives = 144/152 (94.74%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KDQSQTSP       DDGLVIEESPAS+ QSTVAQEPRTRNRTAELAASTGGALALAVLC
Sbjct: 61  KDQSQTSPGETASSVDDGLVIEESPASETQSTVAQEPRTRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITIGLTPPIARMLARRGIMRSG
Sbjct: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 152

BLAST of Csor.00g230020 vs. ExPASy TrEMBL
Match: A0A6J1I2F7 (uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888 PE=4 SV=1)

HSP 1 Score: 244 bits (622), Expect = 9.96e-81
Identity = 133/152 (87.50%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITPSVDDGFVIEERPTSGIQSTVVEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPIARLLARRGIMRSG 152

BLAST of Csor.00g230020 vs. ExPASy TrEMBL
Match: A0A6J1G6W3 (uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC111451320 PE=4 SV=1)

HSP 1 Score: 243 bits (620), Expect = 2.01e-80
Identity = 132/152 (86.84%), Postives = 136/152 (89.47%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KD  QTSP       DDG VIEE P S IQSTV +EPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIR+PITI LTPPIAR+LARRGIMRSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

BLAST of Csor.00g230020 vs. ExPASy TrEMBL
Match: A0A6J1CXM4 (uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015379 PE=4 SV=1)

HSP 1 Score: 241 bits (614), Expect = 1.65e-79
Identity = 131/152 (86.18%), Postives = 135/152 (88.82%), Query Frame = 0

Query: 1   MAFFTGGGRFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60
           MAFFTGGGRFRELL+KYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQSQTSP-------DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLC 120
           KDQ QT P       DDG VIEE P S+ QST  QEPR RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIGLTPPIARMLARRGIMRSG 145
           NKALLPIRIPITI LTPPI+R+LARRGIMRSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

BLAST of Csor.00g230020 vs. TAIR 10
Match: AT2G20940.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-33
Identity = 79/137 (57.66%), Postives = 97/137 (70.80%), Query Frame = 0

Query: 9   RFRELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSP 68
           R +E++KKYGKVA+GVHFSVS  SI+G Y+AIKNNVDVESLL+K  +  FSSK+    S 
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENPNPSL 63

Query: 69  DDGLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPIRIPITIGL 128
           D  L  + S  SD            N+T +LA S GGALALAVLCNKAL PIR+PIT+ L
Sbjct: 64  DLKLEEQGSVTSD------------NKTKQLAKSAGGALALAVLCNKALFPIRVPITMAL 123

Query: 129 TPPIARMLARRGIMRSG 146
           TPPIAR L +R I+++G
Sbjct: 124 TPPIARFLRQRKILKTG 128

BLAST of Csor.00g230020 vs. TAIR 10
Match: AT2G27290.1 (Protein of unknown function (DUF1279) )

HSP 1 Score: 41.2 bits (95), Expect = 8.3e-04
Identity = 37/129 (28.68%), Postives = 54/129 (41.86%), Query Frame = 0

Query: 11  RELLKKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSSKDQSQTSPDD 70
           +ELL KYG   +    ++S  S +  YV + + VDV++LL K+   G S+          
Sbjct: 104 KELLAKYGGAYLATSITLSLISFSLCYVLVTSGVDVQALLLKV---GIST---------- 163

Query: 71  GLVIEESPASDIQSTVAQEPRTRNRTAELAASTGGALALAVLCNKALLPIRIPITIGLTP 130
                                  N T E      GA ALA   +KA  PIR P T+ LTP
Sbjct: 164 -----------------------NETGEKV----GAFALAYAAHKAASPIRFPPTVALTP 192

Query: 131 PIARMLARR 140
            +A  + ++
Sbjct: 224 IVANWIGKK 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022943842.18.48e-92100.00uncharacterized protein LOC111448454 [Cucurbita moschata] >KAG6571014.1 hypothet... [more]
XP_023513086.16.98e-9199.31uncharacterized protein LOC111777632 [Cucurbita pepo subsp. pepo][more]
XP_022986110.11.41e-8794.08uncharacterized protein LOC111483951 [Cucurbita maxima][more]
XP_022971121.12.06e-8087.50uncharacterized protein LOC111469888 [Cucurbita maxima][more]
XP_022947464.14.15e-8086.84uncharacterized protein LOC111451320 [Cucurbita moschata] >KAG7027024.1 hypothet... [more]
Match NameE-valueIdentityDescription
A0A6J1FU564.11e-92100.00uncharacterized protein LOC111448454 OS=Cucurbita moschata OX=3662 GN=LOC1114484... [more]
A0A6J1JD526.82e-8894.08uncharacterized protein LOC111483951 OS=Cucurbita maxima OX=3661 GN=LOC111483951... [more]
A0A6J1I2F79.96e-8187.50uncharacterized protein LOC111469888 OS=Cucurbita maxima OX=3661 GN=LOC111469888... [more]
A0A6J1G6W32.01e-8086.84uncharacterized protein LOC111451320 OS=Cucurbita moschata OX=3662 GN=LOC1114513... [more]
A0A6J1CXM41.65e-7986.18uncharacterized protein LOC111015379 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
AT2G20940.11.7e-3357.66Protein of unknown function (DUF1279) [more]
AT2G27290.18.3e-0428.68Protein of unknown function (DUF1279) [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009688Protein FAM210A/B-like domainPFAMPF06916DUF1279coord: 9..130
e-value: 4.7E-26
score: 91.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..93
NoneNo IPR availablePANTHERPTHR21377:SF0PROTEIN FAM210B, MITOCHONDRIALcoord: 8..143
NoneNo IPR availablePANTHERPTHR21377UNCHARACTERIZEDcoord: 8..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g230020.m01Csor.00g230020.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion