Csor.00g229550 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g229550
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 3853145 .. 3855940 (+)
RNA-Seq ExpressionCsor.00g229550
SyntenyCsor.00g229550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTTCTTCATTGCAGGGAATGGTCAAACCTCCTGTTGGATGGTTGAATCCAAACTCTTCTTCAGCCCTACTGAGCAAATTTACAAATGAAGGATGGTTCAAGTAAGATATTGGAACCAAAAACCGCTTCCTCTGAATTTCTCCCACGTATACTGCAATGTGACCTTTGGGTACGTTGGATTGACCTCGTACAGATACTGACTGTGTCTTCAGAATTTGTTTGGCACTAAAGAGAAGAGAAGGTAGACGAATTCCCATGTCTAAAATTGATTGAAATGAAAGAACAGTCAAGTACTGACTTCGAATGGTTGAGCTCTTGTGATGAATCTGGAAATTGTAGATTGTACTGCTTAAATGAGAATATGTGAGAAGATTTGAGTTGGATATCTGCTGTTTATTTGGTATGTATATATAGGAGATAAGAACGAAAGTATTGAAGATATCCACATGGGGTGCTCCAGTAGTTGAAGTACAGTTATCAAATTTTATCCAAATTCTGGTACTGTGGATTTCTCTGTCCCAATAAATGAAGTCATATTCAAACATACATATCTGGCTGAAAACTATTAACAGGTATTGAGAAAATGACTAGAAGCGATTCGAAAATTTGGACTGGTCCGAAAATATGTGGTATATATGATGGTAAATGTTGCGACATTATCAGCATAAATGGACCTAAATGTCTGGAGGATGTTTATAATCTTAGAGGCTTGTCATTAAGGTGGTTCTAATATATGTTTGCTGCCTTGCAATACTAAGTGGACGAGGTGCTTCTCATCTCAACATACAAAAATCCATCTCCCAACAAACTGCTGGGAGATGATGTTGAACTTTTCTGCATATTTTTTTCTTTTTGTTGGATTTCCATTTATATCGTTTGTTTTATTGATTGTGTATTGTGCATATATTCCTTATTTATATTTGTAATATTTCCTTTCTTATTGATTGATGGGACAATGATAACCATATTATTTTGAAGGAAGGTACCGATCCCATTAACGTGCACCCCTACCAGTATCTGCATACTCAAAAGGGGGAAACTGAATGCATGATAGCTGACATGCTAGATGCGGGTATTATTCAAATAAATGTAAGTTCTTTCTCCAGTCCATTGATCTTAGTGAAAAAAGGGGAGCTGAAGGGTTTCTATGAGTTCGTAGTTATGTCTTTTGGTTTAACCAATGCACTGAGATTAGAAATAATTTGTTTAAGAACATCATTTTAGAATGAGATTACCGGCCCTCTTGAATTGGCGGGGTGTTTGGCTGTTTTTGTATTCGTTTGGTAATCAGCATGAAATCAGTTTCCTTAAGGAACTGTAGATCAAAAGTTTCAGTTGATGAAATTGCAAAATGAAAATCTTAGTTTCACTGCAATTGATATTTTTCATTGATATTCAAGTGGTTCTGTAATTCTCCACCTTTTCAAATAAAATTCACTTTATAGTAACATTTGACTCTTATCTCCTGCAGAAAAAGAAGATATGAAAAAAGTTGTCAAAATTTCAAGCAAGATTGCTCTTTGTTCTCAAGCTTTCATGAAGTGTGCAGTCTAGAAGTGACATCAATGAAGGCTTCTTCTTTGCAGGAAATGGTCAATCCTCCGGTTGGATGGTTGAATCCGAACTCTTCTTCAGCCCTACTGAGCAAGTCTAAAAATGAAGGATGGAATATTACAAAGTCAAAATGCAAGTGAATAGAAAAAATGGTAACAAATATGACAGATTTCCCTTTGCTCTTCATCCTTCAAGATACGTATATTGCAGTGAGTTCATTGAAGGCGTCTTCTTTGTAAGGAATTGTGAGGCTCCCCCTGAGGATGATGGAAACCAAACTCTTCTTCTGCGTGGCTTAGCAGTTGCTGGAATGATGGGTGGTTTAAGTAAGATATCAGAACACACAAAATCGGTTGAGAAGGAACCAAAAATTGGCCTTACGATCCAATTATATGCAGAATCATATAATTATTGAAACTCCTCAGTCCTTGCTTAGTACATTAAGCATTGATTAACTGTGAAGCCTACCAATTTGAACGAGCTTTTAGTTGATGTTTTTCTGTAGCATATGCATTGTGTCACAATTGCACCCCTCCGGGACGTTTATAAGCAATTGTACGGCACTTATTCTCTGCACCAAGTGAGTCAGGCAACTCAAAATTGCGTCGCCTACAGCCCGATGACGTATGCTCAAGCTTCTGGCCTCGTTTGAGGATAAAGTTTTTAGAAAATGGGGTACAGAGATTTTTGAAAGAGGGTTTGAAAGCAAGATTAAAAGAAAGGTTGAAAAGCAACACACCGGCTTAAATAATATATAACTTTGTGTAGGAAAAATTGACAACTAGTCGCATTCCTCTATAATACATTTTGAGGCATTTCAAGTCTGCAGTATAATTTTGTCGAAACTTCATATACTTAGGAAATACAAAAAATAAACTATACATAATGAAAGCGATAAAGGAAAATAGTAAAGTGATATATCTGGCCATGGACAATACGTCTTGACATGACTGTGACACATTACATCTATTTCTTGGGACACGGATCATTAGCAACGTGAAAGAAGACCTTCTTCAAACTGATTAACTGACCATTCCATTTTCTATGTTTTCAGGCACATGGACCTACTTGCATTTCAACTTGGATTTGACTCGAGACTCGCTTCATAGAGCACGATATCCTCTTCAGCTTCCGATCCACTTATCTCCATATTGCAGGACTTTCGTCAAAGCAGTCGCTCACCGAGCACCTCGCCAACAAAAATTAAGTTCATTTTTCCATATGGAAGTATGTTAA

mRNA sequence

ATGAAGGCTTCTTCATTGCAGGGAATGGTCAAACCTCCTGTTGGATGGTTGAATCCAAACTCTTCTTCAGCCCTACTGAGCAAATTTACAAATGAAGGATGGTTCAATCTAGAAGTGACATCAATGAAGGCTTCTTCTTTGCAGGAAATGGTCAATCCTCCGGTTGGATGGTTGAATCCGAACTCTTCTTCAGCCCTACTGAGCAAGTCTAAAAATGAAGGATGGAATATTACAAATGAGTTCATTGAAGGCGTCTTCTTTGTAAGGAATTGTGAGGCTCCCCCTGAGGATGATGGAAACCAAACTCTTCTTCTGCGTGGCTTAGCAGTTGCTGGAATGATGGGTGGTTTAAGCACATGGACCTACTTGCATTTCAACTTGGATTTGACTCGAGACTCGCTTCATAGAGCACGATATCCTCTTCAGCTTCCGATCCACTTATCTCCATATTGCAGGACTTTCGTCAAAGCAGTCGCTCACCGAGCACCTCGCCAACAAAAATTAAGTTCATTTTTCCATATGGAAGTATGTTAA

Coding sequence (CDS)

ATGAAGGCTTCTTCATTGCAGGGAATGGTCAAACCTCCTGTTGGATGGTTGAATCCAAACTCTTCTTCAGCCCTACTGAGCAAATTTACAAATGAAGGATGGTTCAATCTAGAAGTGACATCAATGAAGGCTTCTTCTTTGCAGGAAATGGTCAATCCTCCGGTTGGATGGTTGAATCCGAACTCTTCTTCAGCCCTACTGAGCAAGTCTAAAAATGAAGGATGGAATATTACAAATGAGTTCATTGAAGGCGTCTTCTTTGTAAGGAATTGTGAGGCTCCCCCTGAGGATGATGGAAACCAAACTCTTCTTCTGCGTGGCTTAGCAGTTGCTGGAATGATGGGTGGTTTAAGCACATGGACCTACTTGCATTTCAACTTGGATTTGACTCGAGACTCGCTTCATAGAGCACGATATCCTCTTCAGCTTCCGATCCACTTATCTCCATATTGCAGGACTTTCGTCAAAGCAGTCGCTCACCGAGCACCTCGCCAACAAAAATTAAGTTCATTTTTCCATATGGAAGTATGTTAA

Protein sequence

MKASSLQGMVKPPVGWLNPNSSSALLSKFTNEGWFNLEVTSMKASSLQEMVNPPVGWLNPNSSSALLSKSKNEGWNITNEFIEGVFFVRNCEAPPEDDGNQTLLLRGLAVAGMMGGLSTWTYLHFNLDLTRDSLHRARYPLQLPIHLSPYCRTFVKAVAHRAPRQQKLSSFFHMEVC
Homology
[Close]
BLAST of Csor.00g229550 vs. NCBI nr
Match: KAG6571061.1 (hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367 bits (942), Expect = 2.90e-128
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 

Query: 1   MKASSLQGMVKPPVGWLNPNSSSALLSKFTNEGWFNLEVTSMKASSLQEMVNPPVGWLNP 60
           MKASSLQGMVKPPVGWLNPNSSSALLSKFTNEGWFNLEVTSMKASSLQEMVNPPVGWLNP
Sbjct: 1   MKASSLQGMVKPPVGWLNPNSSSALLSKFTNEGWFNLEVTSMKASSLQEMVNPPVGWLNP 60

Query: 61  NSSSALLSKSKNEGWNITNEFIEGVFFVRNCEAPPEDDGNQTLLLRGLAVAGMMGGLSTW 120
           NSSSALLSKSKNEGWNITNEFIEGVFFVRNCEAPPEDDGNQTLLLRGLAVAGMMGGLSTW
Sbjct: 61  NSSSALLSKSKNEGWNITNEFIEGVFFVRNCEAPPEDDGNQTLLLRGLAVAGMMGGLSTW 120

Query: 121 TYLHFNLDLTRDSLHRARYPLQLPIHLSPYCRTFVKAVAHRAPRQQKLSSFFHMEVC 177
           TYLHFNLDLTRDSLHRARYPLQLPIHLSPYCRTFVKAVAHRAPRQQKLSSFFHMEVC
Sbjct: 121 TYLHFNLDLTRDSLHRARYPLQLPIHLSPYCRTFVKAVAHRAPRQQKLSSFFHMEVC 177

[Close]
BLAST of Csor.00g229550 vs. NCBI nr
Match: KAG7010876.1 (hypothetical protein SDJN02_27674, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 4.88e-08
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 119 TWTYLHFNLDLTRDSLHRARYPLQLPIHLSP 149
           TWTYLHFNLDLTRDSLHRARYPLQL   L+P
Sbjct: 35  TWTYLHFNLDLTRDSLHRARYPLQLGHFLAP 65

[Close]
BLAST of Csor.00g229550 vs. NCBI nr
Match: XP_022986723.1 (uncharacterized protein LOC111484388 isoform X2 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 4.92e-08
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 47  LQEMVNPPVGWLNPNSSSALLSKSKNEGWNIT 78
           + EMVNPPVGWL PNSSSALLS SKNEGWNIT
Sbjct: 139 INEMVNPPVGWLIPNSSSALLSTSKNEGWNIT 170

[Close]
BLAST of Csor.00g229550 vs. NCBI nr
Match: KAF5754645.1 (hypothetical protein HanXRQr2_Chr17g0793601 [Helianthus annuus])

HSP 1 Score: 55.1 bits (131), Expect = 6.40e-07
Identity = 30/68 (44.12%), Postives = 35/68 (51.47%), Query Frame = 0 

Query: 9  MVKPPVGWLNPNSSSALLSKFTNEGWFNLEVTSMKASSLQEMVNPPVGWLNPNSSSALLS 68
          MV PP+GWLNP SSS L                        MV+PP+GWLNP SSS L +
Sbjct: 1  MVSPPIGWLNPYSSSDL-----------------------RMVSPPIGWLNPYSSSDLRN 45

Query: 69 KSKNEGWN 76
          KS   GW+
Sbjct: 61 KSWKNGWS 45

[Close]
BLAST of Csor.00g229550 vs. NCBI nr
Match: KAG6605012.1 (hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.2 bits (139), Expect = 9.08e-07
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 0 

Query: 2  KASSLQGMVKPPVGWLNPNSSSALLSKFTNEGWFNLEVTSM 42
          KASSL G+VKPP+GW NPNSSS LLSK T EG F+L   ++
Sbjct: 39 KASSLHGIVKPPIGWQNPNSSSDLLSKSTKEGCFSLHFQNL 79

[Close]
BLAST of Csor.00g229550 vs. ExPASy TrEMBL
Match: A0A6J1JHD6 (uncharacterized protein LOC111484388 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484388 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.38e-08
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 47  LQEMVNPPVGWLNPNSSSALLSKSKNEGWNIT 78
           + EMVNPPVGWL PNSSSALLS SKNEGWNIT
Sbjct: 139 INEMVNPPVGWLIPNSSSALLSTSKNEGWNIT 170

[Close]
BLAST of Csor.00g229550 vs. ExPASy TrEMBL
Match: A0A7J6GGK7 (Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_006667 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.22e-05
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0 

Query: 2   KASSLQGMVKPPVGWLNPNSSSALLSKFTNEGWFNLEVTS 41
           K    +G+V+PPVGW NPNSSSA  +KF N+GWF     S
Sbjct: 103 KLGETRGIVRPPVGWSNPNSSSARFNKFWNKGWFKYSFQS 142

The following BLAST results are available for this feature:
BLAST of Csor.00g229550 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g229550 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571061.12.90e-128100.00hypothetical protein SDJN03_29976, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7010876.14.88e-0887.10hypothetical protein SDJN02_27674, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022986723.14.92e-0887.50uncharacterized protein LOC111484388 isoform X2 [Cucurbita maxima][more]
KAF5754645.16.40e-0744.12hypothetical protein HanXRQr2_Chr17g0793601 [Helianthus annuus][more]
KAG6605012.19.08e-0765.85hypothetical protein SDJN03_02329, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g229550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JHD62.38e-0887.50uncharacterized protein LOC111484388 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A7J6GGK75.22e-0555.00Glutamine amidotransferase type-1 domain-containing protein OS=Cannabis sativa O... [more]
BLAST of Csor.00g229550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g229550.m01Csor.00g229550.m01mRNA