Csor.00g229430 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g229430
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 3930731 .. 3931742 (+)
RNA-Seq ExpressionCsor.00g229430
SyntenyCsor.00g229430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCGGTTGGGGATGGAGCTTATCTGTTCATGCAATGCCCCTATCGGTTTGCTGTCCACAGACTGCTGTGTGCTGCTCTGTCCAATCTTTTTCAGCCTCAGATTGGTCCTGTGGTCAACAACTGGAAACTGTGCGGTAGAGGTAGATTCCCCTCTTCATGTTCATCTCTTTTCAATTTTCTCTTTTAGCTTTAATTTAGAATGGTGATCTGTGGTATATAGGAAGAGAAATATTTATGGTTTTTTCTCTTTAATATGAAATCTAGAGTAGAGTAATGGCTGAAAAGGCATCACTGTCATGGATTTGTTGTCTCTTCTGATATATTCTATGTCGTCTCCCACTGCTTATTGTCTCTATATATTGATTTCTTTATTCTGGATATCTGTTTCTTTAAAAAGATTCTCAACTCTTTCATGATCATCTTAGTGTCGCTAGGAAAACACGAAAAGATTCTCGACTGGTTCTTAACCATTAGTGTGCGGTGTTATTTTTGGACTCTGTTGTTTAATTCACCCTACACCACTCCTAGTGCTATTAGGAGAGAGGTCCATTGTAATGATGTGATTACTAAGCTCTCTTTGTTATCTCTTAGCATTTAAAAAGAGTTCGATTTGTACTTTTTGGTATCATTCAATGTCGTGTGGCATCAAGCAGGATCGATCGATGGATCGTCTTGGGATGAGAGAAATGTCATGCTGCCCTGCATTTGAGACGACAAGGATGGAGGAAAGAGATCATTGGTAAATATTTTATTGTAGACATGTTTTTTCTTTGTCCAAAATTTGATCCTCAATTCTTTCATAATCATCCAAGTGCGTTTGTTATTAGAAAGACGTGAAATGATTATTCTAGGCTCTTCGTTGACCTGAGCATCCTAATGTGTTTGCTATTAGGAAGACATGATGTTATTAAGTCTTAAATATAAAAGATTCTTTGCCTCTTTTCTTTTAATAATCTTTCTTATTTTGAAGATGCAATAGATTTTGATGTTATTAGGAACATGTTTTGA

mRNA sequence

ATGGTGCGGTTGGGGATGGAGCTTATCTGTTCATGCAATGCCCCTATCGGTTTGCTGTCCACAGACTGCTGTGTGCTGCTCTGTCCAATCTTTTTCAGCCTCAGATTGGTCCTGTGGTCAACAACTGGAAACTGTGCGGTAGAGGATCGATCGATGGATCGTCTTGGGATGAGAGAAATGTCATGCTGCCCTGCATTTGAGACGACAAGGATGGAGGAAAGAGATCATTGGAACATGTTTTGA

Coding sequence (CDS)

ATGGTGCGGTTGGGGATGGAGCTTATCTGTTCATGCAATGCCCCTATCGGTTTGCTGTCCACAGACTGCTGTGTGCTGCTCTGTCCAATCTTTTTCAGCCTCAGATTGGTCCTGTGGTCAACAACTGGAAACTGTGCGGTAGAGGATCGATCGATGGATCGTCTTGGGATGAGAGAAATGTCATGCTGCCCTGCATTTGAGACGACAAGGATGGAGGAAAGAGATCATTGGAACATGTTTTGA

Protein sequence

MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREMSCCPAFETTRMEERDHWNMF
Homology
[Close]
BLAST of Csor.00g229430 vs. NCBI nr
Match: KAG6571073.1 (hypothetical protein SDJN03_29988, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172 bits (436), Expect = 3.28e-54
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1  MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREM 60
          MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREM
Sbjct: 1  MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREM 60

Query: 61 SCCPAFETTRMEERDHWNMF 80
          SCCPAFETTRMEERDHWNMF
Sbjct: 61 SCCPAFETTRMEERDHWNMF 80

[Close]
BLAST of Csor.00g229430 vs. NCBI nr
Match: XP_023511799.1 (uncharacterized protein LOC111776708 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162 bits (410), Expect = 7.62e-50
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0 

Query: 1   MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREM 60
           MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMRE+
Sbjct: 34  MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREV 93

Query: 61  SCCPAFETTRMEERDHW 77
           SCCPAFE TRMEERDHW
Sbjct: 94  SCCPAFEATRMEERDHW 110

[Close]
BLAST of Csor.00g229430 vs. NCBI nr
Match: XP_022986641.1 (uncharacterized protein LOC111484319 [Cucurbita maxima])

HSP 1 Score: 139 bits (351), Expect = 7.56e-41
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREM 60
          MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTT NCAVEDRSMDRLGMREM
Sbjct: 14 MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAVEDRSMDRLGMREM 73

Query: 61 SCCPAFE 67
          SCCPAFE
Sbjct: 74 SCCPAFE 80

[Close]
BLAST of Csor.00g229430 vs. ExPASy TrEMBL
Match: A0A6J1JBS2 (uncharacterized protein LOC111484319 OS=Cucurbita maxima OX=3661 GN=LOC111484319 PE=4 SV=1)

HSP 1 Score: 139 bits (351), Expect = 3.66e-41
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0 

Query: 1  MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTGNCAVEDRSMDRLGMREM 60
          MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTT NCAVEDRSMDRLGMREM
Sbjct: 14 MVRLGMELICSCNAPIGLLSTDCCVLLCPIFFSLRLVLWSTTENCAVEDRSMDRLGMREM 73

Query: 61 SCCPAFE 67
          SCCPAFE
Sbjct: 74 SCCPAFE 80

The following BLAST results are available for this feature:
BLAST of Csor.00g229430 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g229430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571073.13.28e-54100.00hypothetical protein SDJN03_29988, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023511799.17.62e-5097.40uncharacterized protein LOC111776708 [Cucurbita pepo subsp. pepo][more]
XP_022986641.17.56e-4198.51uncharacterized protein LOC111484319 [Cucurbita maxima][more]
BLAST of Csor.00g229430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JBS23.66e-4198.51uncharacterized protein LOC111484319 OS=Cucurbita maxima OX=3661 GN=LOC111484319... [more]
BLAST of Csor.00g229430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g229430.m01Csor.00g229430.m01mRNA