Csor.00g226670 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g226670
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Csor_Chr09: 4217122 .. 4217673 (+)
RNA-Seq Expression	Csor.00g226670
Synteny	Csor.00g226670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGAAGATCGTAATCAAACAGCAGTAGTTCCTGTAAGTCGGTATGAATCTCAAAAGAGGAGAGATTGGTATACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTGCCAGTGCAATTCAAGTCATGTATTGGACTTCCTTCGATATCTTGACCAATTTGGGAAGACAAAAGTGCACTTAAATGGGTGTGGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCGTCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTACGAGAAGTCAAAGACTCTCAGTCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTAATCCACTGAATTAG

mRNA sequence

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGAAGATCGTAATCAAACAGCAGTAGTTCCTGTAAGTCGGTATGAATCTCAAAAGAGGAGAGATTGGTATACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTGCCAGTGCAATTCAAGTCATGTATTGGACTTCCTTCGATATCTTGACCAATTTGGGAAGACAAAAGTGCACTTAAATGGGTGTGGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCGTCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTACGAGAAGTCAAAGACTCTCAGTCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTAATCCACTGAATTAG

Coding sequence (CDS)

ATGTCGACTAGTAAAGGCAACGATGTTGGTGAAGGATCGTCGTCAAATTCCTCTTCGTCTTCGTCTCTCGTTGCTGTTATCGAAGATCGTAATCAAACAGCAGTAGTTCCTGTAAGTCGGTATGAATCTCAAAAGAGGAGAGATTGGTATACGTTTGGACAATATTTGAGGAACCAAAGACCTCCATTGGCTATCTGCCAGTGCAATTCAAGTCATGTATTGGACTTCCTTCGATATCTTGACCAATTTGGGAAGACAAAAGTGCACTTAAATGGGTGTGGTTTTTTTGGTCAACCCGAGCCACCTGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTCGATGCGCTTATTGGTCGCCTTAGAGCTGCTTACGAAGAAAATGGAGGCTCGTCAGACACTAACCCATTTGCTAGTGGTGCTATTAGGGTTTATTTACGAGAAGTCAAAGACTCTCAGTCCAAGGCAAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAACTCACACTCATCAACCAGGTAATCCACTGAATTAG

Protein sequence

MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGNPLN

Homology

[Close]

BLAST of Csor.00g226670 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.4e-63
Identity = 112/146 (76.71%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 25  AVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFG 84
           +++E       V  SRYESQKRRDW TFGQYL+NQRPP+ +  C+ +HVLDFLRYLDQFG
Sbjct: 10  SLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFG 69

Query: 85  KTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAI 144
           KTKVH+ GC F+GQPEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAI
Sbjct: 70  KTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAI 129

Query: 145 RVYLREVKDSQSKARGIPYKKKKKKK 171
           RVYLREV++ Q+KARGIPYKKKKKKK
Sbjct: 130 RVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Csor.00g226670 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.2e-58
Identity = 106/161 (65.84%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 10  GEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCN 69
           G G SS ++  +  VA            +SRYESQKRRDW TF QYLRN RPPL + +C+
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQ----PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCS 64

Query: 70  SSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEE 129
            +HV++FLRYLDQFGKTKVH +GC F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE
Sbjct: 65  GAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE 124

Query: 130 NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           +GG+ ++NPFA+ A+R+YLREV+DSQ+KARGIPY+KKK+K+
Sbjct: 125 SGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of Csor.00g226670 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.2e-58
Identity = 106/161 (65.84%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 10  GEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCN 69
           G G SS ++  +  VA            +SRYESQKRRDW TF QYLRN RPPL + +C+
Sbjct: 5   GPGPSSAAAGGAPAVAAAPQ----PPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCS 64

Query: 70  SSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEE 129
            +HV++FLRYLDQFGKTKVH +GC F+GQP PPGPC CPLRQAWGSLDALIGRLRAAYEE
Sbjct: 65  GAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEE 124

Query: 130 NGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKK 171
           +GG+ ++NPFA+ A+R+YLREV+DSQ+KARGIPY+KKK+K+
Sbjct: 125 SGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKR 161

[Close]

BLAST of Csor.00g226670 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.7e-57
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 13  SSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSH 72
           ++S+SSSSSS          +    +SRYE+QKRRDW TFGQYLRN RPPL++ +C+ +H
Sbjct: 29  TTSSSSSSSS--------GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 73  VLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGG 132
           VL+FLRYLDQFGKTKVH + C FFG P PP PC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 133 SSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIP 173
           S +TNPF + A+R+YLREV+DSQ+KARGI Y+KKK+K+ P
Sbjct: 149 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 180

[Close]

BLAST of Csor.00g226670 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.6e-57
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 39  SRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQ 98
           SRYESQKRRDW+TFGQYLRN RPPL + +C+ +HVL+FLRYLDQFGKTKVH  GC FFG 
Sbjct: 21  SRYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAAGCPFFGH 80

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
           P PP PC CPLRQAWGSLDAL+GRLRAA+EE+GG  + NPF + A+R+YLREV+DSQ+KA
Sbjct: 81  PSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKA 140

Query: 159 RGIPYKKKKKKKIPT 174
           RGI Y+KK++K+ PT
Sbjct: 141 RGIAYEKKRRKRPPT 155

[Close]

BLAST of Csor.00g226670 vs. NCBI nr
Match: KAG6591914.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 375 bits (963), Expect = 2.88e-131
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR 60
           MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR
Sbjct: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR 60

Query: 61  PPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 61  PPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN 180
           GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN
Sbjct: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN 180

Query: 181 PLN 183
           PLN
Sbjct: 181 PLN 183

[Close]

BLAST of Csor.00g226670 vs. NCBI nr
Match: KAG7024787.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370 bits (950), Expect = 2.76e-129
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR 60
           MSTSKGNDVGEGSSSNSSSSSSLVAVI+DRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR
Sbjct: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR 60

Query: 61  PPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PPLAI QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN 180
           GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN
Sbjct: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN 180

Query: 181 PLN 183
           PLN
Sbjct: 181 PLN 183

[Close]

BLAST of Csor.00g226670 vs. NCBI nr
Match: XP_023522810.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (937), Expect = 1.35e-126
Identity = 178/183 (97.27%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR 60
           MSTSKGNDVGEGSSSNSSSSSSLVAVI+DRNQTAV PV+RYESQKRRDWYTFGQYLRNQR
Sbjct: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60

Query: 61  PPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PPLAI QCNSSHVLDFLRYLDQFGKTKVHLNGC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN 180
           GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN
Sbjct: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPGN 180

Query: 181 PLN 183
           PLN
Sbjct: 181 PLN 183

[Close]

BLAST of Csor.00g226670 vs. NCBI nr
Match: XP_023536377.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357 bits (915), Expect = 5.41e-124
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQR 60
           MSTSKGNDVGEGSSSNSSSSSSLVAVI+DRNQTAV PV+RYESQKRRDWYTFGQYLRNQR
Sbjct: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIDDRNQTAVAPVNRYESQKRRDWYTFGQYLRNQR 60

Query: 61  PPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALI 120
           PPLAI QCNSSHVLDFLRYLDQFGKTKVHLNGC FFGQPEPPGPCTCPLRQAWGSLDALI
Sbjct: 61  PPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCSFFGQPEPPGPCTCPLRQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPG 179
           GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPG
Sbjct: 121 GRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQPG 179

[Close]

BLAST of Csor.00g226670 vs. NCBI nr
Match: XP_022937367.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 353 bits (905), Expect = 6.23e-122
Identity = 175/182 (96.15%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQ---TAVVPVSRYESQKRRDWYTFGQYLR 60
           MSTSKGNDVGEGSSSNSSSSSSLVAVI DRNQ   TAV PVSRYESQKRRDWYTFGQYLR
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRNQPAATAVAPVSRYESQKRRDWYTFGQYLR 92

Query: 61  NQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLD 120
           NQRPPLAI QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSLD
Sbjct: 93  NQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLD 152

Query: 121 ALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ 179
           ALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ
Sbjct: 153 ALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ 212

[Close]

BLAST of Csor.00g226670 vs. ExPASy TrEMBL
Match: A0A6J1FB04 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111443674 PE=3 SV=1)

HSP 1 Score: 353 bits (905), Expect = 3.02e-122
Identity = 175/182 (96.15%), Postives = 176/182 (96.70%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQ---TAVVPVSRYESQKRRDWYTFGQYLR 60
           MSTSKGNDVGEGSSSNSSSSSSLVAVI DRNQ   TAV PVSRYESQKRRDWYTFGQYLR
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSSLVAVINDRNQPAATAVAPVSRYESQKRRDWYTFGQYLR 92

Query: 61  NQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLD 120
           NQRPPLAI QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPL+QAWGSLD
Sbjct: 93  NQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLKQAWGSLD 152

Query: 121 ALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ 179
           ALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ
Sbjct: 153 ALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTHQ 212

[Close]

BLAST of Csor.00g226670 vs. ExPASy TrEMBL
Match: A0A6J1IH94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111476929 PE=3 SV=1)

HSP 1 Score: 337 bits (865), Expect = 4.48e-116
Identity = 168/183 (91.80%), Postives = 172/183 (93.99%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSSLVAVIEDRNQ----TAVVPVSRYESQKRRDWYTFGQYL 60
           MSTSKGND GEGSSSNSSSSSS VAVI+DRNQ       VPVSRYESQKRRDWYTFGQYL
Sbjct: 38  MSTSKGNDFGEGSSSNSSSSSSFVAVIDDRNQQQQQAVAVPVSRYESQKRRDWYTFGQYL 97

Query: 61  RNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 120
           RNQRPPLAI QCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL
Sbjct: 98  RNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSL 157

Query: 121 DALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIPTHTH 179
           DALIGRLRAAYEENGG+SDTNPFASGAIRVYLRE+KDSQSKARGIPYKKKKKK IP+HTH
Sbjct: 158 DALIGRLRAAYEENGGTSDTNPFASGAIRVYLRELKDSQSKARGIPYKKKKKK-IPSHTH 217

[Close]

BLAST of Csor.00g226670 vs. ExPASy TrEMBL
Match: A0A1S3CJY2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103501807 PE=3 SV=1)

HSP 1 Score: 308 bits (789), Expect = 8.19e-105
Identity = 159/198 (80.30%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIEDRN-----------------QTAVVPV-SRY 60
           MS+SKG DV EGSSSNSSSSSS L+ V++D+N                 + A  PV SRY
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPTPVISRY 60

Query: 61  ESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP 120
           ESQKRRDWYTFGQYLRNQRPPLAI QCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+PEP
Sbjct: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP 120

Query: 121 PGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGI 179
            GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGI
Sbjct: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGI 180

[Close]

BLAST of Csor.00g226670 vs. ExPASy TrEMBL
Match: A0A5D3DWV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001030 PE=3 SV=1)

HSP 1 Score: 308 bits (789), Expect = 1.48e-104
Identity = 159/198 (80.30%), Postives = 169/198 (85.35%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIEDRN-----------------QTAVVPV-SRY 60
           MS+SKG DV EGSSSNSSSSSS L+ V++D+N                 + A  PV SRY
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDEAAPTPVISRY 60

Query: 61  ESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQPEP 120
           ESQKRRDWYTFGQYLRNQRPPLAI QCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+PEP
Sbjct: 61  ESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEP 120

Query: 121 PGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKARGI 179
            GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKARGI
Sbjct: 121 AGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGI 180

[Close]

BLAST of Csor.00g226670 vs. ExPASy TrEMBL
Match: A0A0A0L028 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 SV=1)

HSP 1 Score: 306 bits (784), Expect = 5.07e-104
Identity = 158/200 (79.00%), Postives = 169/200 (84.50%), Query Frame = 0


Query: 1   MSTSKGNDVGEGSSSNSSSSSS-LVAVIEDRNQ-----------------TAVVP---VS 60
           MS+SKG DV EGSSSNSSSSSS L+ V++D N                  ++VV    +S
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQFERGDEQAAPTSSVVGAPVIS 60

Query: 61  RYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQP 120
           RYESQKRRDWYTFGQYLRNQRPPLAI QCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+P
Sbjct: 61  RYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEP 120

Query: 121 EPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKAR 179
           EP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKAR
Sbjct: 121 EPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKAR 180

[Close]

BLAST of Csor.00g226670 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-64
Identity = 112/146 (76.71%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 25  AVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFG 84
           +++E       V  SRYESQKRRDW TFGQYL+NQRPP+ +  C+ +HVLDFLRYLDQFG
Sbjct: 10  SLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFG 69

Query: 85  KTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAI 144
           KTKVH+ GC F+GQPEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAI
Sbjct: 70  KTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAI 129

Query: 145 RVYLREVKDSQSKARGIPYKKKKKKK 171
           RVYLREV++ Q+KARGIPYKKKKKKK
Sbjct: 130 RVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Csor.00g226670 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-64
Identity = 112/146 (76.71%), Postives = 126/146 (86.30%), Query Frame = 0


Query: 25  AVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFG 84
           +++E       V  SRYESQKRRDW TFGQYL+NQRPP+ +  C+ +HVLDFLRYLDQFG
Sbjct: 10  SLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFG 69

Query: 85  KTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAI 144
           KTKVH+ GC F+GQPEPP PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAI
Sbjct: 70  KTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAI 129

Query: 145 RVYLREVKDSQSKARGIPYKKKKKKK 171
           RVYLREV++ Q+KARGIPYKKKKKKK
Sbjct: 130 RVYLREVRECQAKARGIPYKKKKKKK 155

[Close]

BLAST of Csor.00g226670 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.0 bits (567), Expect = 1.9e-58
Identity = 107/160 (66.88%), Postives = 130/160 (81.25%), Query Frame = 0


Query: 13  SSSNSSSSSSLVAVIEDRNQTAVVPVSRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSH 72
           ++S+SSSSSS          +    +SRYE+QKRRDW TFGQYLRN RPPL++ +C+ +H
Sbjct: 29  TTSSSSSSSS--------GGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 88

Query: 73  VLDFLRYLDQFGKTKVHLNGCGFFGQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGG 132
           VL+FLRYLDQFGKTKVH + C FFG P PP PC CPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 89  VLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGG 148

Query: 133 SSDTNPFASGAIRVYLREVKDSQSKARGIPYKKKKKKKIP 173
           S +TNPF + A+R+YLREV+DSQ+KARGI Y+KKK+K+ P
Sbjct: 149 SPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPP 180

[Close]

BLAST of Csor.00g226670 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 222.2 bits (565), Expect = 3.3e-58
Identity = 103/135 (76.30%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 37  PVSRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFF 96
           P+SRYESQKRRDW TF QYL++Q PPL + Q + +HVL FLRYLDQFGKTKVH   C FF
Sbjct: 34  PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFF 93

Query: 97  GQPEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSS-DTNPFASGAIRVYLREVKDSQ 156
           GQP+PPGPCTCPL+QAWGSLDALIGRLRAAYEE+GG S DTNPFA+G+IRV+LREV++SQ
Sbjct: 94  GQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQ 153

Query: 157 SKARGIPYKKKKKKK 171
           +KARGIPY+KKK++K
Sbjct: 154 AKARGIPYRKKKRRK 168

[Close]

BLAST of Csor.00g226670 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 221.1 bits (562), Expect = 7.4e-58
Identity = 97/137 (70.80%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 39  SRYESQKRRDWYTFGQYLRNQRPPLAICQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQ 98
           SRYESQKRRDW TF QYL+N +PPLA+ +C+ +HV++FL+YLDQFGKTKVH+  C +FG 
Sbjct: 30  SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGH 89

Query: 99  PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 158
            +PP PC+CPL+QAWGSLDALIGRLRAAYEENGG  D+NPFA+ A+R+YLREV++SQ+KA
Sbjct: 90  QQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKA 149

Query: 159 RGIPYKKKKKKKIPTHT 176
           RGIPY+KKK+K+ PT T
Sbjct: 150 RGIPYEKKKRKRPPTVT 166

The following BLAST results are available for this feature:

BLAST of Csor.00g226670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	4.4e-63	76.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	3.2e-58	65.84	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	3.2e-58	65.84	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9LW68	2.7e-57	66.88	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2YG32	3.6e-57	72.59	Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1	[more]

BLAST of Csor.00g226670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591914.1	2.88e-131	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
KAG7024787.1	2.76e-129	98.91	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_023522810.1	1.35e-126	97.27	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like, partial [Cucurbita pepo subsp....	[more]
XP_023536377.1	5.41e-124	97.21	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022937367.1	6.23e-122	96.15	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]

BLAST of Csor.00g226670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FB04	3.02e-122	96.15	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IH94	4.48e-116	91.80	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S3CJY2	8.19e-105	80.30	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3DWV8	1.48e-104	80.30	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0L028	5.07e-104	79.00	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 S...	[more]

BLAST of Csor.00g226670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	3.1e-64	76.71	Protein of unknown function (DUF640)	[more]
AT2G42610.2	3.1e-64	76.71	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.9e-58	66.88	Protein of unknown function (DUF640)	[more]
AT4G18610.1	3.3e-58	76.30	Protein of unknown function (DUF640)	[more]
AT1G07090.1	7.4e-58	70.80	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 36..153 e-value: 1.2E-61 score: 206.4
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 40..167 score: 74.550797
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..183
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 2..174
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 2..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g226670.m01	Csor.00g226670.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus