Csor.00g226180 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g226180
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	translation initiation factor IF-1, chloroplastic
Location	Csor_Chr09: 4469527 .. 4470266 (+)
RNA-Seq Expression	Csor.00g226180
Synteny	Csor.00g226180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAACACTAATCTCCTCCGTTTCCCTCTCCTTCAGCTCCACTCCCGGACGCCGTCCACTCTCTTTTTTCCTGCCATCAAATCGCATCTCTCCGTCGTATCGATCGCTTTTCCGACCTCCCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAGGCTCTATCGTCGATTCTCTCCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGGTAAAATTCGGAAGAATTTTGTGCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGCAGTAGTTAGGATTCATCTTCATGAATGCTAGTTGGATTTATTAGTTTGGAATGTGTTGATTTTGTGACATAGTGTAGTGATCCCTCTTTTTGTTCTTCTTTAGAATGTAAAATGAGAAAAATGTAGTTTGCTTGAGCTCCATTGTTTTTGTGATTTGTAGTTGTGGTTGAATCGCTAAGAGTTCCAGAGCTCATGAATTTATGTCTTGTTCGTAATTGTTTTGAACTAAAGAAAGAGGATAATTTTGCTTTTCCAGTTTATTCTTTGAGATGCTTTTGGTTTTTCTTCACAAGGGATATTAGCATGCTTACCTACTTGCAGAAATTAAATAA

mRNA sequence

ATGTCGAACACTAATCTCCTCCGTTTCCCTCTCCTTCAGCTCCACTCCCGGACGCCGTCCACTCTCTTTTTTCCTGCCATCAAATCGCATCTCTCCGTCGTATCGATCGCTTTTCCGACCTCCCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAGGCTCTATCGTCGATTCTCTCCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGAAATTAAATAA

Coding sequence (CDS)

ATGTCGAACACTAATCTCCTCCGTTTCCCTCTCCTTCAGCTCCACTCCCGGACGCCGTCCACTCTCTTTTTTCCTGCCATCAAATCGCATCTCTCCGTCGTATCGATCGCTTTTCCGACCTCCCAGTTCCTTCGTAACCCTTCCCATGGTCCGGCAAGGTTCGCGCTCATGGCAAAGCCTCCAAAAAGCGACAGCACGGAGCAGAAATGGAGCTACGAAGGCTCTATCGTCGATTCTCTCCCCAATGGAATGTTCAGAGTTCGATTGGATAATGAAGACCTCATTCTTGGCTACATATGTGAAATTAAATAA

Protein sequence

MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICEIK

Homology

[Close]

BLAST of Csor.00g226180 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-11
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 0


Query: 40  TSQFLRNPSHGPARFAL----MAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLI 99
           T  FL  P   PA  AL     AKP KS   EQKW +EG I++SLPNGMFRVRLDNEDLI
Sbjct: 36  TLSFLAPPPLLPAAPALSAASAAKPDKSG--EQKWVHEGLIMESLPNGMFRVRLDNEDLI 95

[Close]

BLAST of Csor.00g226180 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 0


Query: 67  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYI 100
           EQKW++EG I +SLPNGMFRVRLDNEDLILGY+
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYV 35

[Close]

BLAST of Csor.00g226180 vs. ExPASy Swiss-Prot
Match: Q95GN3 (Translation initiation factor IF-1, chloroplastic OS=Cercidiphyllum japonicum OX=13413 GN=infA PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-09
Identity = 28/33 (84.85%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 67  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYI 100
           EQKW +EG I +SLPNGMFRVRLDNEDLILGYI
Sbjct: 3   EQKWVHEGLITESLPNGMFRVRLDNEDLILGYI 35

[Close]

BLAST of Csor.00g226180 vs. ExPASy Swiss-Prot
Match: P69041 (Translation initiation factor IF-1, chloroplastic OS=Antirrhinum majus OX=4151 GN=infA PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 67  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYI 100
           EQKW +EG I +SLPNGMFRVRLDNEDLILGY+
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYV 35

[Close]

BLAST of Csor.00g226180 vs. ExPASy Swiss-Prot
Match: A6MM71 (Translation initiation factor IF-1, chloroplastic OS=Buxus microphylla OX=153571 GN=infA PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-09
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 67  EQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYI 100
           EQKW +EG I +SLPNGMFRVRLDNEDLILGY+
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYV 35

[Close]

BLAST of Csor.00g226180 vs. NCBI nr
Match: KAG6591963.1 (Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208 bits (529), Expect = 1.12e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICEIK 103
           PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICEIK
Sbjct: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICEIK 103

[Close]

BLAST of Csor.00g226180 vs. NCBI nr
Match: KAG7024835.1 (Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199 bits (507), Expect = 7.87e-64
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MSNTNLLRFPLLQLHSR PSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSNTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100
           PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Sbjct: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100

[Close]

BLAST of Csor.00g226180 vs. NCBI nr
Match: XP_023535141.1 (uncharacterized protein LOC111796655 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194 bits (493), Expect = 3.27e-62
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MS+TNLLRFPLLQLHSR PSTLFFPAIKSHL VVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLPVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100
           PKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYIC 100

[Close]

BLAST of Csor.00g226180 vs. NCBI nr
Match: XP_022936830.1 (uncharacterized protein LOC111443299 [Cucurbita moschata])

HSP 1 Score: 194 bits (494), Expect = 7.54e-62
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MS+TNLLRFPLLQLHSR PSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100
           PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Sbjct: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100

[Close]

BLAST of Csor.00g226180 vs. NCBI nr
Match: XP_023535140.1 (uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194 bits (493), Expect = 1.07e-61
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MS+TNLLRFPLLQLHSR PSTLFFPAIKSHL VVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLPVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100
           PKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYIC 100

[Close]

BLAST of Csor.00g226180 vs. ExPASy TrEMBL
Match: A0A6J1FET6 (uncharacterized protein LOC111443299 OS=Cucurbita moschata OX=3662 GN=LOC111443299 PE=3 SV=1)

HSP 1 Score: 194 bits (494), Expect = 3.65e-62
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MS+TNLLRFPLLQLHSR PSTLFFPAIKSHLSVVSIAF TSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLSVVSIAFSTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100
           PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC
Sbjct: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100

[Close]

BLAST of Csor.00g226180 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 194 bits (493), Expect = 5.19e-62
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MS+TNLLRFPLL LHSR PSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 100
           PKSDSTEQKWSYEGSIV+SLPNGMFRVRLDNEDLILGYIC
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYIC 100

[Close]

BLAST of Csor.00g226180 vs. ExPASy TrEMBL
Match: A0A1S3BT96 (translation initiation factor IF-1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493487 PE=3 SV=1)

HSP 1 Score: 155 bits (393), Expect = 5.94e-47
Identity = 77/102 (75.49%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 1   MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
           MS+TNLL+FPLLQ H R PSTL FP +KSHLSVVSI+FPTSQFL  PSH P  FALMAK 
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61  PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYICEI 102
           PK+D++EQK S+EGS+V+SLPNGMFRVRLDNEDLILGYI  +
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGV 102

[Close]

BLAST of Csor.00g226180 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 155 bits (392), Expect = 1.48e-46
Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 1  MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
          MS+TNLL+FPLLQ H R PSTL FP +KSHLSVVSI+FPTSQFL  PSH P  FALMAK 
Sbjct: 1  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 61 PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYI 99
          PK+D++EQK S+EGS+V+SLPNGMFRVRLDNEDLILGYI
Sbjct: 61 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYI 99

[Close]

BLAST of Csor.00g226180 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 152 bits (383), Expect = 3.36e-45
Identity = 74/99 (74.75%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 1  MSNTNLLRFPLLQLHSRTPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60
          MS+TNLL+FPLLQ   R PST  FPAIKSH+SVVSI FP+SQFL NPSHGP  F  MAK 
Sbjct: 1  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60

Query: 61 PKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYI 99
          PKS+S+EQK+S+EGS+++SLPNGMFRV+LDNEDLILGYI
Sbjct: 61 PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYI 99

[Close]

BLAST of Csor.00g226180 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 48.9 bits (115), Expect = 2.8e-06
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 50  GPARFALMAKPPKSDSTEQKWSYEGSIVDSLPNGMFRVRLDNEDLILGYIC 101
           G A  +  AKP   + +  K   EG + +SLPNGMFRV L+N D ILGYIC
Sbjct: 54  GGANRSKPAKPQVKEGS-NKTVIEGLVTESLPNGMFRVDLENGDNILGYIC 103

The following BLAST results are available for this feature:

BLAST of Csor.00g226180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KR7	2.2e-11	64.06	Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA...	[more]
A0A370	1.2e-09	81.82	Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=...	[more]
Q95GN3	2.0e-09	84.85	Translation initiation factor IF-1, chloroplastic OS=Cercidiphyllum japonicum OX...	[more]
P69041	2.7e-09	81.82	Translation initiation factor IF-1, chloroplastic OS=Antirrhinum majus OX=4151 G...	[more]
A6MM71	2.7e-09	81.82	Translation initiation factor IF-1, chloroplastic OS=Buxus microphylla OX=153571...	[more]

BLAST of Csor.00g226180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591963.1	1.12e-67	100.00	Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosper...	[more]
KAG7024835.1	7.87e-64	99.00	Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_023535141.1	3.27e-62	96.00	uncharacterized protein LOC111796655 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022936830.1	7.54e-62	97.00	uncharacterized protein LOC111443299 [Cucurbita moschata]	[more]
XP_023535140.1	1.07e-61	96.00	uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g226180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FET6	3.65e-62	97.00	uncharacterized protein LOC111443299 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1IP00	5.19e-62	96.00	uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947...	[more]
A0A1S3BT96	5.94e-47	75.49	translation initiation factor IF-1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7V7J3	1.48e-46	77.78	Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1FLU6	3.36e-45	74.75	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=...	[more]

BLAST of Csor.00g226180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	2.8e-06	50.98	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 61..102 e-value: 1.5E-7 score: 32.9
None	No IPR available	PANTHER	PTHR33370:SF1	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 44..100
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 44..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g226180.m01	Csor.00g226180.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity