Csor.00g226140 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g226140
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	E3 ubiquitin-protein ligase RMA3-like
Location	Csor_Chr09: 4485985 .. 4486761 (+)
RNA-Seq Expression	Csor.00g226140
Synteny	Csor.00g226140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACTGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCTCCCCCACACCCGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCGTATAGCGACATTGCTTCATATGCACCTTCTTATCTTGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA

mRNA sequence

ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACTGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCTCCCCCACACCCGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCGTATAGCGACATTGCTTCATATGCACCTTCTTATCTTGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA

Coding sequence (CDS)

ATGGAACAAAACCATTCCGTGCATGAGTCTGAACATGATGTCTCTCTCAAGCAAAACTGGAGATCCGTCTCAGAAGATGCTAATGGTTGTTTCGAATGCAACATTTGCTTAGACTCAGCCGATGATCCTGTTGTCACCCTCTGTGGTCACCTCTACTGCTGGCCGTGCATTTACATATGGCTTCACGTTCAAATCTCCAGCGACGAACCCGAAAACACCCAGAACTGCCCTGTTTGTAAGGCTAGCATCACTCCCTCTTCTTTGGTTCCCCTCTATGGTCGTGGCACGTCGAACTCAGATTCCGAATCCAAGAAGTCTCACTTGGGTATGGCTGTACCTCGAAGACCACCACCGTCGATGAACGCACTGCCCCATTCCAATGCTGCCTCTGCATTGCATCCTAGCCAGCAGCTTCATCCAAATTATATCCGCTCGTCCTCTCCCCCACACCCGCACCAGCACCAGCACCCAATCTATCACCAACAATACTTCCCCCAGGCGTATAGCGACATTGCTTCATATGCACCTTCTTATCTTGGTAATGCCGTGATAACAAGTCTGCTAAACCCGACGATTGGGATGTTCGGAGAAACAGTTTTCACTAGAATTTTCGGTAGCGTGGATGGAAACTTGTTGCCATACCCGACTTACAACAACTCGATCACAGGGAATGGCAGTAGCAGAATGAGAAGACAGGAAATGCAGCTTGATAAGTCTCTTAATAGAGTCTCCATCTTTCTATTTTGCTGCTTTATCATCTGTCTTCTATTGTTTTGA

Protein sequence

MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF

Homology

[Close]

BLAST of Csor.00g226140 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.6e-47
Identity = 117/236 (49.58%), Postives = 146/236 (61.86%), Query Frame = 0


Query: 28  NGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQ-NCPVCKASITPS 87
           +GCF+CNICLD+A DPVVTLCGHL+CWPCIY WLHVQ+SS   +  Q NCPVCK++IT +
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITIT 98

Query: 88  SLVPLYGRGTSNSDS---ESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQLHPNYI 147
           SLVPLYGRG S+  S     K+  L   +PRRP PS    P   +AS+L+PS Q      
Sbjct: 99  SLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNP-ITSASSLNPSLQ------ 158

Query: 148 RSSSPPHPHQHQHPIYH-QQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTR 207
                   HQ   P +H  QY P+ ++   S   + L NAV+ S L P IGMFG+ V+TR
Sbjct: 159 --------HQTLSPSFHNHQYSPRGFTTTES---TDLANAVMMSFLYPVIGMFGDLVYTR 218

Query: 208 IFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           IFG          T+ N+I     S   ++ MQ +KSLNRVSIF  CC I+CLLLF
Sbjct: 219 IFG----------TFTNTIAQPYQS---QRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Csor.00g226140 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.7e-39
Identity = 102/257 (39.69%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 10  SEHDVSLKQNWRS----VSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQI 69
           ++HD  L + W+S    V E+ +G F+CNICLD   +PV+TLCGHLYCWPCIY W++ Q 
Sbjct: 15  NKHDTPLGK-WKSMNDEVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQS 74

Query: 70  SSDEPENTQ--NCPVCKASITPSSLVPLYGR-GTSNSDSESKKSHLGMAVPRRPPPSMNA 129
            S E  + Q   CPVCKA ++  +L+PLYGR G S   SE K  +LG+ +P+RPP     
Sbjct: 75  VSSENSDQQQPQCPVCKAEVSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCG 134

Query: 130 LPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNA 189
                  +  +PSQ L     +  S     Q + P Y   Y           +P      
Sbjct: 135 GHFLLPTTDSNPSQLLQRRGYQQQS-----QTRQPAYQGSYMS---------SPMLSPGG 194

Query: 190 VITSLLNPTIGMFGETVFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLN 249
              ++L  +  M GE  + RIFG+    +  YP +YN +I  + S RMRRQ  Q D+SL 
Sbjct: 195 ATANMLQHS--MIGEVAYARIFGNSSTTMYTYPNSYNLAI--SSSPRMRRQLSQADRSLG 252

Query: 250 RVSIFLFCCFIICLLLF 259
           R+  FLFCCF+ CL+LF
Sbjct: 255 RICFFLFCCFVTCLILF 252

[Close]

BLAST of Csor.00g226140 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.4e-37
Identity = 104/241 (43.15%), Postives = 143/241 (59.34%), Query Frame = 0


Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRP--PPSMNALPHSNAASA-LHPSQQL 143
            ++ S+LVPLYGRG   +  E K S     VP+RP  P     +P+S  AS  L  SQ++
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 HPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 203
           H N     SP            + Y+P +   ++S + SY      +++L+P + M GE 
Sbjct: 161 HFN-----SP-----------QEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEM 220

Query: 204 VFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLL 259
           V TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+  F  CC ++CLLL
Sbjct: 221 VATRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLL 249

[Close]

BLAST of Csor.00g226140 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.6e-25
Identity = 77/240 (32.08%), Postives = 105/240 (43.75%), Query Frame = 0


Query: 26  DANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISS-------DEPENTQNCPV 85
           D+ G F+CNICLD   DPVVTLCGHL+CWPCI+ W +   +S       D       CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 86  CKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQL 145
           CK+ ++ ++LVP+YGRG        K    G  VP RP                      
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRP---------------------- 133

Query: 146 HPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 205
                             P+Y  +   Q   +  S    Y        + +P +G+  E 
Sbjct: 134 ----------------TGPVYDLRGVGQRLGEGESQRYMY-------RMPDPVMGVVCEM 193

Query: 206 VFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           V+ R+FG    N+ PY   N         R RR+ MQ ++SL+RV +FL C   +CL LF
Sbjct: 194 VYRRLFGESSSNMAPYRDMN--------VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Csor.00g226140 vs. ExPASy Swiss-Prot
Match: Q09463 (E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-19
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 10  SEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDE 69
           SE     ++   S ++D +  FECNICLD+A D VV+LCGHL+CWPC+  WL      D 
Sbjct: 3   SETKAPSEEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWL------DT 62

Query: 70  PENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPP 119
             N Q CPVCK++I  + +VP+YGRG  +SD   K           PPP
Sbjct: 63  RPNNQVCPVCKSAIDGNKVVPIYGRGGDSSDPRKKVPPRPKGQRSEPPP 105

[Close]

BLAST of Csor.00g226140 vs. NCBI nr
Match: KAG6591967.1 (E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 530 bits (1364), Expect = 6.60e-190
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180
           NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG
Sbjct: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 258
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 258

[Close]

BLAST of Csor.00g226140 vs. NCBI nr
Match: KAG7024839.1 (E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 526 bits (1355), Expect = 1.56e-188
Identity = 257/258 (99.61%), Postives = 257/258 (99.61%), Query Frame = 0


Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180
           NALPHSNAASALHPSQQLHPNYIRSSS PHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG
Sbjct: 121 NALPHSNAASALHPSQQLHPNYIRSSSHPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 258
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 258

[Close]

BLAST of Csor.00g226140 vs. NCBI nr
Match: XP_022937391.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita moschata])

HSP 1 Score: 514 bits (1325), Expect = 7.28e-184
Identity = 255/264 (96.59%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRG SNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGMSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPH------QHQHPIYHQQYFPQAYSDIASY 180
           NA PHSNAASALHPSQQLHPNYIRSSS PHPH      QHQHPIYHQQYFPQAYSDIASY
Sbjct: 121 NAPPHSNAASALHPSQQLHPNYIRSSSHPHPHPHPHQHQHQHPIYHQQYFPQAYSDIASY 180

Query: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240
           APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM
Sbjct: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240

Query: 241 QLDKSLNRVSIFLFCCFIICLLLF 258
           QLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 QLDKSLNRVSIFLFCCFIICLLLF 264

[Close]

BLAST of Csor.00g226140 vs. NCBI nr
Match: XP_023535125.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 510 bits (1314), Expect = 2.58e-182
Identity = 251/258 (97.29%), Postives = 252/258 (97.67%), Query Frame = 0


Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHES HDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESGHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180
           NA PHSNAASALHPSQQLHPNYIRS  P HPH HQHPIYHQQYFPQAYSD+ASYAPSYLG
Sbjct: 121 NAPPHSNAASALHPSQQLHPNYIRS--PSHPHPHQHPIYHQQYFPQAYSDVASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 258
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 256

[Close]

BLAST of Csor.00g226140 vs. NCBI nr
Match: XP_022976563.1 (E3 ubiquitin-protein ligase RMA3-like [Cucurbita maxima])

HSP 1 Score: 507 bits (1305), Expect = 6.08e-181
Identity = 249/258 (96.51%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180
           N  PHSNAASALH SQQLHPNYIRS  P HPH HQHPIYHQQYFPQAY+D+ASYAPSYLG
Sbjct: 121 NTPPHSNAASALHHSQQLHPNYIRS--PSHPHPHQHPIYHQQYFPQAYTDVASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 258
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 256

[Close]

BLAST of Csor.00g226140 vs. ExPASy TrEMBL
Match: A0A6J1FA79 (E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita moschata OX=3662 GN=LOC111443695 PE=4 SV=1)

HSP 1 Score: 514 bits (1325), Expect = 3.52e-184
Identity = 255/264 (96.59%), Postives = 255/264 (96.59%), Query Frame = 0


Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRG SNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGMSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPH------QHQHPIYHQQYFPQAYSDIASY 180
           NA PHSNAASALHPSQQLHPNYIRSSS PHPH      QHQHPIYHQQYFPQAYSDIASY
Sbjct: 121 NAPPHSNAASALHPSQQLHPNYIRSSSHPHPHPHPHQHQHQHPIYHQQYFPQAYSDIASY 180

Query: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240
           APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM
Sbjct: 181 APSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEM 240

Query: 241 QLDKSLNRVSIFLFCCFIICLLLF 258
           QLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 QLDKSLNRVSIFLFCCFIICLLLF 264

[Close]

BLAST of Csor.00g226140 vs. ExPASy TrEMBL
Match: A0A6J1IMJ1 (E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita maxima OX=3661 GN=LOC111476921 PE=4 SV=1)

HSP 1 Score: 507 bits (1305), Expect = 2.94e-181
Identity = 249/258 (96.51%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60
           MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW
Sbjct: 1   MEQNHSVHESEHDVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIW 60

Query: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120
           LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM
Sbjct: 61  LHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSM 120

Query: 121 NALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLG 180
           N  PHSNAASALH SQQLHPNYIRS  P HPH HQHPIYHQQYFPQAY+D+ASYAPSYLG
Sbjct: 121 NTPPHSNAASALHHSQQLHPNYIRS--PSHPHPHQHPIYHQQYFPQAYTDVASYAPSYLG 180

Query: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240
           NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL
Sbjct: 181 NAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSL 240

Query: 241 NRVSIFLFCCFIICLLLF 258
           NRVSIFLFCCFIICLLLF
Sbjct: 241 NRVSIFLFCCFIICLLLF 256

[Close]

BLAST of Csor.00g226140 vs. ExPASy TrEMBL
Match: A0A5A7VD79 (E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003900 PE=4 SV=1)

HSP 1 Score: 440 bits (1131), Expect = 1.13e-154
Identity = 224/268 (83.58%), Postives = 236/268 (88.06%), Query Frame = 0


Query: 1   MEQNHSVHE----SEHDVSLKQNWRSVS------EDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV E    SE DVSLKQNW+S+S      EDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTESTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSD 180
           AVPRRPPPSMN  P SN++SA +PSQ+LH NYIRS S        HPIYHQQYFPQAY +
Sbjct: 121 AVPRRPPPSMNTPPPSNSSSASYPSQELHSNYIRSPS--------HPIYHQQYFPQAYGN 180

Query: 181 IASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMR 240
            ASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYP YNNSI+GN S+RMR
Sbjct: 181 FASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSISGNASTRMR 240

Query: 241 RQEMQLDKSLNRVSIFLFCCFIICLLLF 258
           RQEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 RQEMQLDKSLNRVSIFLFCCFIICLLLF 260

[Close]

BLAST of Csor.00g226140 vs. ExPASy TrEMBL
Match: A0A1S3BTX0 (E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo OX=3656 GN=LOC103493490 PE=4 SV=1)

HSP 1 Score: 440 bits (1131), Expect = 1.13e-154
Identity = 224/268 (83.58%), Postives = 236/268 (88.06%), Query Frame = 0


Query: 1   MEQNHSVHE----SEHDVSLKQNWRSVS------EDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV E    SE DVSLKQNW+S+S      EDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTESTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSD 180
           AVPRRPPPSMN  P SN++SA +PSQ+LH NYIRS S        HPIYHQQYFPQAY +
Sbjct: 121 AVPRRPPPSMNTPPPSNSSSASYPSQELHSNYIRSPS--------HPIYHQQYFPQAYGN 180

Query: 181 IASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRMR 240
            ASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYP YNNSI+GN S+RMR
Sbjct: 181 FASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPPYNNSISGNASTRMR 240

Query: 241 RQEMQLDKSLNRVSIFLFCCFIICLLLF 258
           RQEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 RQEMQLDKSLNRVSIFLFCCFIICLLLF 260

[Close]

BLAST of Csor.00g226140 vs. ExPASy TrEMBL
Match: A0A0A0KZN0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637750 PE=4 SV=1)

HSP 1 Score: 432 bits (1112), Expect = 9.16e-152
Identity = 222/269 (82.53%), Postives = 235/269 (87.36%), Query Frame = 0


Query: 1   MEQNHSVHE----SEHDVSLKQNWRSVS------EDANGCFECNICLDSADDPVVTLCGH 60
           MEQN+SV E    SE DVSLKQNW+S+S      EDANGCF+CNICLDSA DPVVTLCGH
Sbjct: 1   MEQNYSVPEAYLESEQDVSLKQNWKSISTQSTISEDANGCFDCNICLDSAADPVVTLCGH 60

Query: 61  LYCWPCIYIWLHVQISSDEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120
           LYCWPCIY WLHVQISS+EPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM
Sbjct: 61  LYCWPCIYKWLHVQISSNEPENTQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGM 120

Query: 121 AVPRRPPPSMNALPHSNAASALHPSQQLHPNYIRSSSPPHPHQHQHPIYHQQYFPQA-YS 180
           AVPRRPPPSMN   HSN++S L+PSQ+LH NYIRS S        HPIYHQQYFPQA Y 
Sbjct: 121 AVPRRPPPSMNTPSHSNSSSTLYPSQELHSNYIRSPS--------HPIYHQQYFPQATYG 180

Query: 181 DIASYAPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYPTYNNSITGNGSSRM 240
           + ASY+PSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPY  YNNSI+GN S+RM
Sbjct: 181 NFASYSPSYLGNAVITSLLNPTIGMFGETVFTRIFGSVDGNLLPYSPYNNSISGNASTRM 240

Query: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 258
           RRQEMQLDKSLNRVSIFLFCCFIICLLLF
Sbjct: 241 RRQEMQLDKSLNRVSIFLFCCFIICLLLF 261

[Close]

BLAST of Csor.00g226140 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-48
Identity = 117/236 (49.58%), Postives = 146/236 (61.86%), Query Frame = 0


Query: 28  NGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPENTQ-NCPVCKASITPS 87
           +GCF+CNICLD+A DPVVTLCGHL+CWPCIY WLHVQ+SS   +  Q NCPVCK++IT +
Sbjct: 39  SGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITIT 98

Query: 88  SLVPLYGRGTSNSDS---ESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQLHPNYI 147
           SLVPLYGRG S+  S     K+  L   +PRRP PS    P   +AS+L+PS Q      
Sbjct: 99  SLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNP-ITSASSLNPSLQ------ 158

Query: 148 RSSSPPHPHQHQHPIYH-QQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGETVFTR 207
                   HQ   P +H  QY P+ ++   S   + L NAV+ S L P IGMFG+ V+TR
Sbjct: 159 --------HQTLSPSFHNHQYSPRGFTTTES---TDLANAVMMSFLYPVIGMFGDLVYTR 218

Query: 208 IFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           IFG          T+ N+I     S   ++ MQ +KSLNRVSIF  CC I+CLLLF
Sbjct: 219 IFG----------TFTNTIAQPYQS---QRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Csor.00g226140 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-38
Identity = 104/241 (43.15%), Postives = 143/241 (59.34%), Query Frame = 0


Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRP--PPSMNALPHSNAASA-LHPSQQL 143
            ++ S+LVPLYGRG   +  E K S     VP+RP  P     +P+S  AS  L  SQ++
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 HPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 203
           H N     SP            + Y+P +   ++S + SY      +++L+P + M GE 
Sbjct: 161 HFN-----SP-----------QEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEM 220

Query: 204 VFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLL 259
           V TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+  F  CC ++CLLL
Sbjct: 221 VATRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLL 249

[Close]

BLAST of Csor.00g226140 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 156.8 bits (395), Expect = 2.4e-38
Identity = 104/241 (43.15%), Postives = 143/241 (59.34%), Query Frame = 0


Query: 24  SEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQ--ISSDEPENTQNCPVCKA 83
           ++D+N  F+CNICLDS  +PVVTLCGHL+CWPCI+ WL VQ   +SDE +  + CPVCK+
Sbjct: 41  TDDSN--FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKS 100

Query: 84  SITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRP--PPSMNALPHSNAASA-LHPSQQL 143
            ++ S+LVPLYGRG   +  E K S     VP+RP  P     +P+S  AS  L  SQ++
Sbjct: 101 KVSHSTLVPLYGRGRCTTQEEGKNS-----VPKRPVGPVYRLEMPNSPYASTDLRLSQRV 160

Query: 144 HPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 203
           H N     SP            + Y+P +   ++S + SY      +++L+P + M GE 
Sbjct: 161 HFN-----SP-----------QEGYYPVS-GVMSSNSLSY------SAVLDPVMVMVGEM 220

Query: 204 VFTRIFGSVDGNLLPYP-TYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLL 259
           V TR+FG+   +   YP TYN  + G    RMRR+ MQ DKSL R+  F  CC ++CLLL
Sbjct: 221 VATRLFGTRVMDRFAYPDTYN--LAGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLL 249

[Close]

BLAST of Csor.00g226140 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 115.9 bits (289), Expect = 4.7e-26
Identity = 77/240 (32.08%), Postives = 105/240 (43.75%), Query Frame = 0


Query: 26  DANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISS-------DEPENTQNCPV 85
           D+ G F+CNICLD   DPVVTLCGHL+CWPCI+ W +   +S       D       CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 86  CKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPPPSMNALPHSNAASALHPSQQL 145
           CK+ ++ ++LVP+YGRG        K    G  VP RP                      
Sbjct: 74  CKSDVSEATLVPIYGRG-------QKAPQSGSNVPSRP---------------------- 133

Query: 146 HPNYIRSSSPPHPHQHQHPIYHQQYFPQAYSDIASYAPSYLGNAVITSLLNPTIGMFGET 205
                             P+Y  +   Q   +  S    Y        + +P +G+  E 
Sbjct: 134 ----------------TGPVYDLRGVGQRLGEGESQRYMY-------RMPDPVMGVVCEM 193

Query: 206 VFTRIFGSVDGNLLPYPTYNNSITGNGSSRMRRQEMQLDKSLNRVSIFLFCCFIICLLLF 259
           V+ R+FG    N+ PY   N         R RR+ MQ ++SL+RV +FL C   +CL LF
Sbjct: 194 VYRRLFGESSSNMAPYRDMN--------VRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Csor.00g226140 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-24
Identity = 59/124 (47.58%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 13  DVSLKQNWRSVSEDANGCFECNICLDSADDPVVTLCGHLYCWPCIYIWLHVQISSDEPEN 72
           DV    +    + + +  FECNICLD A DP+VTLCGHL+CWPC+Y WLH+   S     
Sbjct: 3   DVPSCSSGNDTNNNDSSNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS----- 62

Query: 73  TQNCPVCKASITPSSLVPLYGRGTSNSDSESKKSHLGMAVPRRPP---PSMNALPHSNAA 132
            ++CPVCKA I    LVPLYGRG S++D  S KS  G+ VP RP    P     P  N  
Sbjct: 63  -KDCPVCKAVIEEDRLVPLYGRGKSSADPRS-KSIPGLEVPNRPSGQRPETAQPPDPNHG 119

Query: 133 SALH 134
            A H
Sbjct: 123 FAHH 119

The following BLAST results are available for this feature:

BLAST of Csor.00g226140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GUK7	3.6e-47	49.58	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
Q6R567	4.7e-39	39.69	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	3.4e-37	43.15	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
P93030	6.6e-25	32.08	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q09463	3.2e-19	44.04	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1	[more]

BLAST of Csor.00g226140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6591967.1	6.60e-190	100.00	E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7024839.1	1.56e-188	99.61	E3 ubiquitin-protein ligase RMA3, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_022937391.1	7.28e-184	96.59	E3 ubiquitin-protein ligase RMA3-like [Cucurbita moschata]	[more]
XP_023535125.1	2.58e-182	97.29	E3 ubiquitin-protein ligase RMA3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022976563.1	6.08e-181	96.51	E3 ubiquitin-protein ligase RMA3-like [Cucurbita maxima]	[more]

BLAST of Csor.00g226140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FA79	3.52e-184	96.59	E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita moschata OX=3662 GN=LOC111443...	[more]
A0A6J1IMJ1	2.94e-181	96.51	E3 ubiquitin-protein ligase RMA3-like OS=Cucurbita maxima OX=3661 GN=LOC11147692...	[more]
A0A5A7VD79	1.13e-154	83.58	E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BTX0	1.13e-154	83.58	E3 ubiquitin-protein ligase RMA3 OS=Cucumis melo OX=3656 GN=LOC103493490 PE=4 SV...	[more]
A0A0A0KZN0	9.16e-152	82.53	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637750 P...	[more]

BLAST of Csor.00g226140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27470.1	2.6e-48	49.58	RING membrane-anchor 3	[more]
AT4G03510.1	2.4e-38	43.15	RING membrane-anchor 1	[more]
AT4G03510.2	2.4e-38	43.15	RING membrane-anchor 1	[more]
AT4G28270.1	4.7e-26	32.08	RING membrane-anchor 2	[more]
AT1G19310.1	4.4e-24	47.58	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 33..79 e-value: 1.2E-9 score: 48.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 33..80 score: 12.489278
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 12..107 e-value: 2.2E-16 score: 61.5
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 33..77 e-value: 3.6E-8 score: 33.3
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 4..258
None	No IPR available	PANTHER	PTHR12313:SF69	E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE	coord: 4..258
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 31..81 e-value: 3.26109E-24 score: 89.6707
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 25..92
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 48..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g226140.m01	Csor.00g226140.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity