Csor.00g224310 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCCTCAGCTTCAGGTATCTCTCTTTTTCTCACTCTTTAATTCCTTCGATTTTCTCCACTTTGTTCTTCTTTTTGTTTGAAAATTTCTTTGTAACATTGTTTGAATTTTTTGAATCTTGTGGATGAGTTCTTGGTACTCTCTGGTAGATTTCTTGTTTGTTTGGTTGCAGAGGATCGGAATTTCACTGGCTTTTTGTTCCTGTTTGAGAATTTATTTGTCTGTTTGATCGATCGTGTAGAAATTGGAACTCCTTTGGTTTAGAACTGACTCAATTGTTTTGTTCTTGTGGAAGATTTGTTGTCTGTTTAGCTGTATAGAAACAGAAACTCATTGGCTAGAAATTGGGTCAACTCTTCGGTTCCTGTGGAAATCTTTGTGCTCCCGCTGTTTGTTTGTGTAGAAACTTAGACTCATTGGATTAGAAACTGAGGCAAATTGCAAATACTTTCGATTATAGTTTAAAATTGAAAGTCGAGTCGGGCACCTTCGGTATGCCGTATCCTCTTTTTCGAGTTCCAAGAGATTGTGTGTGTATTACCCAAATGGCATATTTCCCACGATTCTTATTATCAGGTGTGGCTAATCGACTGTTTGCTGTGTAATACACATTGTTTATTACCCACAAAACCTTATAACCCACAAAGCTTATTACCACCATTCTTATTACCAGGTGTGGCTAATCGACTGTTTGCTGTGTAATACACATTGTTTATTACCCTCAATTTTGTATCTAAAATATATTTTTAAAAGTTATTGATACATTTAATATCTTTTAAAATTAACGAATCTATTAGACATAAAATTGTCTCATTGGATAATCATTTCATTTTTGTTCTACAATTCATGCTTTTACCTTTCTTAAAGAATCTTTTGAATTCTTAGTCATCGACGTTTAGAAATTTATTAGAGATTTGTTAAAGTTTAGTTACTTATTTGACACAAATTTAAAAATTCAATCTCTTATTAGAAATCTTATTAGAAAATTTGAAAGTTAAGAAACATTTCTTACTAAAGCTGTAATTTAACCCAAATTTTCCGTTTCTGTTTGGTTGTGTATGAACACAAGCACACTGGGTTTTGGAATTGGTGCAAGCTTTTGTTCCTGTGGAAGAGTTTTGTTATTGTGGAGGATTTCTGGTTCCATTTGGTAGTGTAGAACAGAAATTCACTGTTTTTAAGTACTGAGCGAATTGTTGTGTTCCTCCTATGGAAGATTTCTTGTCTGTTTGGTTGTTTTGTTCAGAACCAGAAACTCACTGGGTGTTTAAGCTGAGTCAACAATTTCGTTTTCGTAAAAGAATACTCTCCTCTGTTGGGTGGTATTGAAATAAATCTAAGAAGCACAATTTTAGTTTTGGTACTATGTTCAATGCTGATGTTCTAACAGTTATTGGTCACATGTTGTATACTCGTTAGCTTAATGGACATATGCCAGGCGCTAATTGTGCGAAGTTATTATGAGTTCTACACATATCTAAGCATACAAATGCATGAACTTATTGATTTTGGTATGAATGCATGAACTTATTGATTTTGGATTCATACCCTTACTGTAATATGTGCCCAGTCTTTTAAGAATGACTGTATTTGTGTTTTTTCATATCCTGTCTCGATCCATATTTGTTGTTACAAAATTTGGGTGAGATTCAGTTTGGTTGATGGAAGTAATCTCTTCCTTTAAGTTATGTTATATGTTATTGGAAATCTTCATTACACTCTGCGAGATCCTACATTGATTGGAGAGGGGAACGAAACATTCCTTATAAGAGTGTGGTAACCTCTCCCTAGTAGACGAATTTTAAAATCGTGAGGCTGATGGCGAATATAACGGGGCAAAGCAGACAATATCTACTAGTAGTGGAGTTGGCCTGTTACACTTTCCTTATGATTTCTAGTCTAGCTTGGGAAGGTTTGAAGTCAATTTAGAGGCCTTAGGCCGTGTTTGGTTTTTGGGTTCTTGTTTTTGAAAATTGAATTTATTTTTATTTAGTTTTAAAAATTTGGCTTGTTTATTTAGTGCTTGCATTTGAATTAGTTTCAATCAGATTGCATTTGCATTTAACTCTATTGATAATGTTTGGTTAAGTTCATGTGTAAAACAAATTACAAATTCTTTCTCGAACCAAGTTCCGACTTATTTTGTTAGCCTGATGAATCTTACAATTTCTTCTTTTAGGATCACCTTTCCAGTCTCAACAGAGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAATGTCCCAGCTCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCTTGCCAAAGCGTACGCCCGTCTCCGACAGAGAGATAGAGGCTATATTGGTAAGCAAAATTGTGAGATCTTATGTCGGTTGGAGATAGGAACAAAACATTCCTTATAAGGGTGTAGAAATCTCTCTCTAGTAGACGTGTTTAAAACTGTGAGATTGACGGTGATATGTAACGGGCCAAAGCAAACAATATCCACTAGCGGTAGCAAATATTGTAAAAGTCCAAACCCACTGCTAGTAGATATTGTCCGCTTTGATCCGTTACGCATCACCGTCAGCCTCACGATTTTAAAACCTCTCTATTAGAGAGAGGTTTCCACACTTTTATAAATAATGTTTTATTCTCATCTCTAACTGACGTCTTAGAATTGTGAAATCAATCACAATTGAAAACAAACTTTAGTCTTCAACATGGACTGATGTTTGTTTTGATACACCAATCATTTGATCTTTTCAAACGGATGATTTTTCTAATCTCTCTATTTTTTGTGTCCATGTAGTTAGGTGGAACCTTTTGA ATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCCTCAGCTTCAGGATCACCTTTCCAGTCTCAACAGAGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAATGTCCCAGCTCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCTTGCCAAAGCGTACGCCCGTCTCCGACAGAGAGATAGAGGCTATATTGTTAGGTGGAACCTTTTGA ATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCCTCAGCTTCAGGATCACCTTTCCAGTCTCAACAGAGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAATGTCCCAGCTCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCTTGCCAAAGCGTACGCCCGTCTCCGACAGAGAGATAGAGGCTATATTGTTAGGTGGAACCTTTTGA MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAVGGKASLLPKRTPVSDREIEAILLGGTF Homology
BLAST of Csor.00g224310 vs. NCBI nr
Match: KAG6605778.1 (hypothetical protein SDJN03_03095, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 175 bits (444), Expect = 3.26e-55 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0
BLAST of Csor.00g224310 vs. NCBI nr
Match: XP_022995845.1 (uncharacterized protein LOC111491252 [Cucurbita maxima]) HSP 1 Score: 167 bits (423), Expect = 5.23e-52 Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0
BLAST of Csor.00g224310 vs. NCBI nr
Match: XP_022158039.1 (uncharacterized protein LOC111024619 [Momordica charantia]) HSP 1 Score: 149 bits (376), Expect = 7.99e-45 Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of Csor.00g224310 vs. NCBI nr
Match: XP_038874479.1 (uncharacterized protein LOC120067123 [Benincasa hispida]) HSP 1 Score: 145 bits (365), Expect = 3.81e-43 Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 0
BLAST of Csor.00g224310 vs. NCBI nr
Match: KAG7035746.1 (hypothetical protein SDJN02_02544 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 142 bits (358), Expect = 1.40e-40 Identity = 82/111 (73.87%), Postives = 83/111 (74.77%), Query Frame = 0
BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A6J1K519 (uncharacterized protein LOC111491252 OS=Cucurbita maxima OX=3661 GN=LOC111491252 PE=4 SV=1) HSP 1 Score: 167 bits (423), Expect = 2.53e-52 Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0
BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A6J1DY89 (uncharacterized protein LOC111024619 OS=Momordica charantia OX=3673 GN=LOC111024619 PE=4 SV=1) HSP 1 Score: 149 bits (376), Expect = 3.87e-45 Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 0
BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A1S3AV04 (uncharacterized protein LOC103482959 OS=Cucumis melo OX=3656 GN=LOC103482959 PE=4 SV=1) HSP 1 Score: 137 bits (346), Expect = 1.42e-40 Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 0
BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A0A0KJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139480 PE=4 SV=1) HSP 1 Score: 129 bits (324), Expect = 3.61e-37 Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 0
BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A2N9J8X4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60865 PE=4 SV=1) HSP 1 Score: 108 bits (269), Expect = 7.98e-29 Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 0
BLAST of Csor.00g224310 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 77.0 bits (188), Expect = 8.2e-15 Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0
BLAST of Csor.00g224310 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 4.2e-11 Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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