Csor.00g224310 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g224310
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionNADH-dependent glutamate synthase 1 isoform 1
LocationCsor_Chr02: 6961820 .. 6964694 (+)
RNA-Seq ExpressionCsor.00g224310
SyntenyCsor.00g224310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCCTCAGCTTCAGGTATCTCTCTTTTTCTCACTCTTTAATTCCTTCGATTTTCTCCACTTTGTTCTTCTTTTTGTTTGAAAATTTCTTTGTAACATTGTTTGAATTTTTTGAATCTTGTGGATGAGTTCTTGGTACTCTCTGGTAGATTTCTTGTTTGTTTGGTTGCAGAGGATCGGAATTTCACTGGCTTTTTGTTCCTGTTTGAGAATTTATTTGTCTGTTTGATCGATCGTGTAGAAATTGGAACTCCTTTGGTTTAGAACTGACTCAATTGTTTTGTTCTTGTGGAAGATTTGTTGTCTGTTTAGCTGTATAGAAACAGAAACTCATTGGCTAGAAATTGGGTCAACTCTTCGGTTCCTGTGGAAATCTTTGTGCTCCCGCTGTTTGTTTGTGTAGAAACTTAGACTCATTGGATTAGAAACTGAGGCAAATTGCAAATACTTTCGATTATAGTTTAAAATTGAAAGTCGAGTCGGGCACCTTCGGTATGCCGTATCCTCTTTTTCGAGTTCCAAGAGATTGTGTGTGTATTACCCAAATGGCATATTTCCCACGATTCTTATTATCAGGTGTGGCTAATCGACTGTTTGCTGTGTAATACACATTGTTTATTACCCACAAAACCTTATAACCCACAAAGCTTATTACCACCATTCTTATTACCAGGTGTGGCTAATCGACTGTTTGCTGTGTAATACACATTGTTTATTACCCTCAATTTTGTATCTAAAATATATTTTTAAAAGTTATTGATACATTTAATATCTTTTAAAATTAACGAATCTATTAGACATAAAATTGTCTCATTGGATAATCATTTCATTTTTGTTCTACAATTCATGCTTTTACCTTTCTTAAAGAATCTTTTGAATTCTTAGTCATCGACGTTTAGAAATTTATTAGAGATTTGTTAAAGTTTAGTTACTTATTTGACACAAATTTAAAAATTCAATCTCTTATTAGAAATCTTATTAGAAAATTTGAAAGTTAAGAAACATTTCTTACTAAAGCTGTAATTTAACCCAAATTTTCCGTTTCTGTTTGGTTGTGTATGAACACAAGCACACTGGGTTTTGGAATTGGTGCAAGCTTTTGTTCCTGTGGAAGAGTTTTGTTATTGTGGAGGATTTCTGGTTCCATTTGGTAGTGTAGAACAGAAATTCACTGTTTTTAAGTACTGAGCGAATTGTTGTGTTCCTCCTATGGAAGATTTCTTGTCTGTTTGGTTGTTTTGTTCAGAACCAGAAACTCACTGGGTGTTTAAGCTGAGTCAACAATTTCGTTTTCGTAAAAGAATACTCTCCTCTGTTGGGTGGTATTGAAATAAATCTAAGAAGCACAATTTTAGTTTTGGTACTATGTTCAATGCTGATGTTCTAACAGTTATTGGTCACATGTTGTATACTCGTTAGCTTAATGGACATATGCCAGGCGCTAATTGTGCGAAGTTATTATGAGTTCTACACATATCTAAGCATACAAATGCATGAACTTATTGATTTTGGTATGAATGCATGAACTTATTGATTTTGGATTCATACCCTTACTGTAATATGTGCCCAGTCTTTTAAGAATGACTGTATTTGTGTTTTTTCATATCCTGTCTCGATCCATATTTGTTGTTACAAAATTTGGGTGAGATTCAGTTTGGTTGATGGAAGTAATCTCTTCCTTTAAGTTATGTTATATGTTATTGGAAATCTTCATTACACTCTGCGAGATCCTACATTGATTGGAGAGGGGAACGAAACATTCCTTATAAGAGTGTGGTAACCTCTCCCTAGTAGACGAATTTTAAAATCGTGAGGCTGATGGCGAATATAACGGGGCAAAGCAGACAATATCTACTAGTAGTGGAGTTGGCCTGTTACACTTTCCTTATGATTTCTAGTCTAGCTTGGGAAGGTTTGAAGTCAATTTAGAGGCCTTAGGCCGTGTTTGGTTTTTGGGTTCTTGTTTTTGAAAATTGAATTTATTTTTATTTAGTTTTAAAAATTTGGCTTGTTTATTTAGTGCTTGCATTTGAATTAGTTTCAATCAGATTGCATTTGCATTTAACTCTATTGATAATGTTTGGTTAAGTTCATGTGTAAAACAAATTACAAATTCTTTCTCGAACCAAGTTCCGACTTATTTTGTTAGCCTGATGAATCTTACAATTTCTTCTTTTAGGATCACCTTTCCAGTCTCAACAGAGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAATGTCCCAGCTCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCTTGCCAAAGCGTACGCCCGTCTCCGACAGAGAGATAGAGGCTATATTGGTAAGCAAAATTGTGAGATCTTATGTCGGTTGGAGATAGGAACAAAACATTCCTTATAAGGGTGTAGAAATCTCTCTCTAGTAGACGTGTTTAAAACTGTGAGATTGACGGTGATATGTAACGGGCCAAAGCAAACAATATCCACTAGCGGTAGCAAATATTGTAAAAGTCCAAACCCACTGCTAGTAGATATTGTCCGCTTTGATCCGTTACGCATCACCGTCAGCCTCACGATTTTAAAACCTCTCTATTAGAGAGAGGTTTCCACACTTTTATAAATAATGTTTTATTCTCATCTCTAACTGACGTCTTAGAATTGTGAAATCAATCACAATTGAAAACAAACTTTAGTCTTCAACATGGACTGATGTTTGTTTTGATACACCAATCATTTGATCTTTTCAAACGGATGATTTTTCTAATCTCTCTATTTTTTGTGTCCATGTAGTTAGGTGGAACCTTTTGA

mRNA sequence

ATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCCTCAGCTTCAGGATCACCTTTCCAGTCTCAACAGAGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAATGTCCCAGCTCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCTTGCCAAAGCGTACGCCCGTCTCCGACAGAGAGATAGAGGCTATATTGTTAGGTGGAACCTTTTGA

Coding sequence (CDS)

ATGGGCGTTGAAGGGCATCTTTTGAAGCGAATTCCTCGCATTAAATTCCCCGAAAGGCACCCGAAATCCTCAGCTTCAGGATCACCTTTCCAGTCTCAACAGAGCCCTTCAACAGAAAACCTTGGTTACTATGCACTTTCGGGTTCCAATGTCCCAGCTCCGCTCCAAGACACGGCCGTGGGAGGAAAAGCGTCTCTCTTGCCAAAGCGTACGCCCGTCTCCGACAGAGAGATAGAGGCTATATTGTTAGGTGGAACCTTTTGA

Protein sequence

MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAVGGKASLLPKRTPVSDREIEAILLGGTF
Homology
BLAST of Csor.00g224310 vs. NCBI nr
Match: KAG6605778.1 (hypothetical protein SDJN03_03095, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175 bits (444), Expect = 3.26e-55
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAV 60
          MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAV
Sbjct: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAV 60

Query: 61 GGKASLLPKRTPVSDREIEAILLGGTF 87
          GGKASLLPKRTPVSDREIEAILLGGTF
Sbjct: 61 GGKASLLPKRTPVSDREIEAILLGGTF 87

BLAST of Csor.00g224310 vs. NCBI nr
Match: XP_022995845.1 (uncharacterized protein LOC111491252 [Cucurbita maxima])

HSP 1 Score: 167 bits (423), Expect = 5.23e-52
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAV 60
          MGVEGHLLKRIPRIKFPERHPKSSASGS  QSQQ PSTENLGYYALSGSNVPAPLQDTAV
Sbjct: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSSSQSQQRPSTENLGYYALSGSNVPAPLQDTAV 60

Query: 61 GGKASLLPKRTPVSDREIEAILLGGTF 87
          GGKASLLPKRTPVSDREIEAILLGGTF
Sbjct: 61 GGKASLLPKRTPVSDREIEAILLGGTF 87

BLAST of Csor.00g224310 vs. NCBI nr
Match: XP_022158039.1 (uncharacterized protein LOC111024619 [Momordica charantia])

HSP 1 Score: 149 bits (376), Expect = 7.99e-45
Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPST-ENLGYYALSGSNVPAPLQDTA 60
          MGVEGH+LKRIPRIKFPERHPKSSASGS FQ+Q +PST +++GYYALSGS+VPAP Q+TA
Sbjct: 1  MGVEGHVLKRIPRIKFPERHPKSSASGSAFQAQNNPSTIKDIGYYALSGSDVPAPPQNTA 60

Query: 61 VGGKASLLPKRTPVSDREIEAILLGGTF 87
          VGGKASLLPKRTPVSDREIEAILLGG F
Sbjct: 61 VGGKASLLPKRTPVSDREIEAILLGGCF 88

BLAST of Csor.00g224310 vs. NCBI nr
Match: XP_038874479.1 (uncharacterized protein LOC120067123 [Benincasa hispida])

HSP 1 Score: 145 bits (365), Expect = 3.81e-43
Identity = 73/88 (82.95%), Postives = 80/88 (90.91%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTE-NLGYYALSGSNVPAPLQDTA 60
          MG+EGH+LKRIPRIKFPERHPKSSASGS  QSQ +PST+ ++GYY LSGSNVPAP Q+ A
Sbjct: 1  MGIEGHVLKRIPRIKFPERHPKSSASGSANQSQHNPSTDKDIGYYTLSGSNVPAPPQNMA 60

Query: 61 VGGKASLLPKRTPVSDREIEAILLGGTF 87
          VGGKASLLPKRTPVSDREIEAILLGG F
Sbjct: 61 VGGKASLLPKRTPVSDREIEAILLGGCF 88

BLAST of Csor.00g224310 vs. NCBI nr
Match: KAG7035746.1 (hypothetical protein SDJN02_02544 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (358), Expect = 1.40e-40
Identity = 82/111 (73.87%), Postives = 83/111 (74.77%), Query Frame = 0

Query: 1   MGVEGHLLKRIPRIKFPERHPKSSAS-------------------------GSPFQSQQS 60
           MGVEGHLLKRIPRIKFPERHPKSSAS                         G+P  SQQS
Sbjct: 1   MGVEGHLLKRIPRIKFPERHPKSSASEDRNFTGFLFLFENLFVCLIDRVEIGTPL-SQQS 60

Query: 61  PSTENLGYYALSGSNVPAPLQDTAVGGKASLLPKRTPVSDREIEAIL-LGG 85
           PSTENLGYYALSGSNVPAPLQDTAVGGKASLLPKRTPVSDREIEAIL LGG
Sbjct: 61  PSTENLGYYALSGSNVPAPLQDTAVGGKASLLPKRTPVSDREIEAILALGG 110

BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A6J1K519 (uncharacterized protein LOC111491252 OS=Cucurbita maxima OX=3661 GN=LOC111491252 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 2.53e-52
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAV 60
          MGVEGHLLKRIPRIKFPERHPKSSASGS  QSQQ PSTENLGYYALSGSNVPAPLQDTAV
Sbjct: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSSSQSQQRPSTENLGYYALSGSNVPAPLQDTAV 60

Query: 61 GGKASLLPKRTPVSDREIEAILLGGTF 87
          GGKASLLPKRTPVSDREIEAILLGGTF
Sbjct: 61 GGKASLLPKRTPVSDREIEAILLGGTF 87

BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A6J1DY89 (uncharacterized protein LOC111024619 OS=Momordica charantia OX=3673 GN=LOC111024619 PE=4 SV=1)

HSP 1 Score: 149 bits (376), Expect = 3.87e-45
Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSASGSPFQSQQSPST-ENLGYYALSGSNVPAPLQDTA 60
          MGVEGH+LKRIPRIKFPERHPKSSASGS FQ+Q +PST +++GYYALSGS+VPAP Q+TA
Sbjct: 1  MGVEGHVLKRIPRIKFPERHPKSSASGSAFQAQNNPSTIKDIGYYALSGSDVPAPPQNTA 60

Query: 61 VGGKASLLPKRTPVSDREIEAILLGGTF 87
          VGGKASLLPKRTPVSDREIEAILLGG F
Sbjct: 61 VGGKASLLPKRTPVSDREIEAILLGGCF 88

BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A1S3AV04 (uncharacterized protein LOC103482959 OS=Cucumis melo OX=3656 GN=LOC103482959 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 1.42e-40
Identity = 72/88 (81.82%), Postives = 79/88 (89.77%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSA-SGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTA 60
          MGVEGH+LKRIPRIKFP+RHPKSS  SGS  QSQ + S +++GYYALSGSNVPAP Q+TA
Sbjct: 1  MGVEGHVLKRIPRIKFPDRHPKSSLPSGSALQSQHN-SDKDIGYYALSGSNVPAPPQNTA 60

Query: 61 VGGKASLLPKRTPVSDREIEAILLGGTF 87
          VGGKASLLPKRTPVSDREIEAILLGG F
Sbjct: 61 VGGKASLLPKRTPVSDREIEAILLGGCF 87

BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A0A0KJG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139480 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 3.61e-37
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSSAS-GSPFQSQQSPSTENLGYYALSGSNVPAPLQDTA 60
          MGVEGH+LKRIPRIKFP+RHPKSS+S GS  QSQ +P  +++GYYALSGSNVPAP Q+ A
Sbjct: 1  MGVEGHVLKRIPRIKFPDRHPKSSSSSGSALQSQHNPD-KDIGYYALSGSNVPAPPQNMA 60

Query: 61 VGGKASLLPKRTPVSDREIEAILL 83
          VGGKASLLPKRTPVSDREIEAIL+
Sbjct: 61 VGGKASLLPKRTPVSDREIEAILV 83

BLAST of Csor.00g224310 vs. ExPASy TrEMBL
Match: A0A2N9J8X4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60865 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 7.98e-29
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 0

Query: 1  MGVEGHLLKRIPRIKFPERHPKSS-ASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTA 60
          MG E HLLKRIPRIKFP+RHP SS +SGS  Q+Q + + ++     +SGS+VPA   +TA
Sbjct: 1  MGGEAHLLKRIPRIKFPQRHPTSSPSSGSTSQTQHTSTKKDTHKITISGSDVPAGPINTA 60

Query: 61 VGGKASLLPKRTPVSDREIEAILLGGTF 87
          VGGKASL PKRTPVSD+EIEAILLGG F
Sbjct: 61 VGGKASLQPKRTPVSDKEIEAILLGGCF 88

BLAST of Csor.00g224310 vs. TAIR 10
Match: AT5G24165.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 8.2e-15
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 0

Query: 8  LKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAVGGKASLL 67
          ++RIPRIKFP+RH  SS SG P     S   +N+     + S+VPA  ++TA GGKASL 
Sbjct: 1  MRRIPRIKFPQRHSISSGSG-PAPGSVSGVKKNV----TASSDVPAAPKNTADGGKASLQ 60

Query: 68 PKRTPVSDREIEAILLGG 86
          PKRTPVSD+EIE+I+LGG
Sbjct: 61 PKRTPVSDKEIESIMLGG 73

BLAST of Csor.00g224310 vs. TAIR 10
Match: AT4G23885.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24165.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 4.2e-11
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 6  HLLKRIPRIKFPERHPKSSASGSPFQSQQSPSTENLGYYALSGSNVPAPLQDTAVGGKAS 65
          H LKRIPRIKFP+RH   SAS    +SQ +   + L +  L+       +Q T  GGKAS
Sbjct: 5  HGLKRIPRIKFPQRHINPSASEG--KSQVANEADTLFFSNLNN------IQKT-TGGKAS 64

Query: 66 LLPKRTPVSDREIEAILLGG 86
            PKRTPVS+ E+EAILLGG
Sbjct: 65 SQPKRTPVSNEEMEAILLGG 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605778.13.26e-55100.00hypothetical protein SDJN03_03095, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022995845.15.23e-5296.55uncharacterized protein LOC111491252 [Cucurbita maxima][more]
XP_022158039.17.99e-4585.23uncharacterized protein LOC111024619 [Momordica charantia][more]
XP_038874479.13.81e-4382.95uncharacterized protein LOC120067123 [Benincasa hispida][more]
KAG7035746.11.40e-4073.87hypothetical protein SDJN02_02544 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A6J1K5192.53e-5296.55uncharacterized protein LOC111491252 OS=Cucurbita maxima OX=3661 GN=LOC111491252... [more]
A0A6J1DY893.87e-4585.23uncharacterized protein LOC111024619 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A1S3AV041.42e-4081.82uncharacterized protein LOC103482959 OS=Cucumis melo OX=3656 GN=LOC103482959 PE=... [more]
A0A0A0KJG53.61e-3779.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139480 PE=4 SV=1[more]
A0A2N9J8X47.98e-2965.91Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60865 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G24165.18.2e-1556.41unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G23885.14.2e-1152.50unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..45
NoneNo IPR availablePANTHERPTHR35751:SF1BNAA02G37040D PROTEINcoord: 4..87
NoneNo IPR availablePANTHERPTHR35751FAMILY NOT NAMEDcoord: 4..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g224310.m01Csor.00g224310.m01mRNA