Csor.00g223880 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g223880
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionAlpha-ketoglutarate-dependent dioxygenase alkB homolog 6
LocationCsor_Chr02: 7171448 .. 7171822 (-)
RNA-Seq ExpressionCsor.00g223880
SyntenyCsor.00g223880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGTGAAGTTGGTGCCAGCAGGGATGGGGCAGGTGGTCCCGGGAAGGCCGTCTTGCCAGCAATTCTTCCTGTGTTGGATGCCGCTCCAATGAATGAGGAAGGGCTCGTCCAGGTGGTTGAAGATGTTGACAACGACGTTGTTGTTGGTGGTGGAGTTGATGTTAGGGCCGGGGAACTCGCCGTTGATGAGTATGCCTTGCTGGGGGACGCCAAGCGGAGAGATGGTGCCGTAGGTGACCTTCCAAGTGAAGAAGAGGTAAGGATCTTCGGCGCGGACCGTCCAGAGCGATGCAGCGGAGAGACAGAGCAGGAGGGCAAACAAGAACAACCCAGAACCCATTTTGGTTCTTCCCTATGGTTTGGAACTTGA

mRNA sequence

ATGGTAGGTGAAGTTGGTGCCAGCAGGGATGGGGCAGGTGGTCCCGGGAAGGCCGTCTTGCCAGCAATTCTTCCTGTGTTGGATGCCGCTCCAATGAATGAGGAAGGGCTCGTCCAGGTGGTTGAAGATGTTGACAACGACGTTGTTGTTGGTGGTGGAGTTGATGTTAGGGCCGGGGAACTCGCCGTTGATGAGTATGCCTTGCTGGGGGACGCCAAGCGGAGAGATGGTGCCGTAGGTGACCTTCCAAGTGAAGAAGAGGTAAGGATCTTCGGCGCGGACCGTCCAGAGCGATGCAGCGGAGAGACAGAGCAGGAGGGCAAACAAGAACAACCCAGAACCCATTTTGGTTCTTCCCTATGGTTTGGAACTTGA

Coding sequence (CDS)

ATGGTAGGTGAAGTTGGTGCCAGCAGGGATGGGGCAGGTGGTCCCGGGAAGGCCGTCTTGCCAGCAATTCTTCCTGTGTTGGATGCCGCTCCAATGAATGAGGAAGGGCTCGTCCAGGTGGTTGAAGATGTTGACAACGACGTTGTTGTTGGTGGTGGAGTTGATGTTAGGGCCGGGGAACTCGCCGTTGATGAGTATGCCTTGCTGGGGGACGCCAAGCGGAGAGATGGTGCCGTAGGTGACCTTCCAAGTGAAGAAGAGGTAAGGATCTTCGGCGCGGACCGTCCAGAGCGATGCAGCGGAGAGACAGAGCAGGAGGGCAAACAAGAACAACCCAGAACCCATTTTGGTTCTTCCCTATGGTTTGGAACTTGA

Protein sequence

MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGELAVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQEQPRTHFGSSLWFGT
Homology
BLAST of Csor.00g223880 vs. NCBI nr
Match: KAG6605820.1 (hypothetical protein SDJN03_03137, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 246 bits (629), Expect = 2.93e-82
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGE 60
           MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGE
Sbjct: 1   MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGE 60

Query: 61  LAVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQEQPRTHFGSSL 120
           LAVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQEQPRTHFGSSL
Sbjct: 61  LAVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQEQPRTHFGSSL 120

Query: 121 WFGT 124
           WFGT
Sbjct: 121 WFGT 124

BLAST of Csor.00g223880 vs. NCBI nr
Match: KAG6388164.1 (hypothetical protein SASPL_153363 [Salvia splendens])

HSP 1 Score: 107 bits (268), Expect = 6.27e-26
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGE 60
           +VG VGA RDGA G G+A+LP +L +LDA P  E+GLV+VVEDVD+DVVVGG +D  AGE
Sbjct: 94  LVGHVGAGRDGAVGAGEALLPRVLALLDAVPREEDGLVEVVEDVDDDVVVGGAIDAGAGE 153

Query: 61  LAVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEG 107
           L VD   LLG A+ R+G V D+P  E V + G  R E+   E E+EG
Sbjct: 154 LVVDGDDLLGGAEGREGRVFDIPRVEVVGVLGVGRAEK-EEEEEREG 199

BLAST of Csor.00g223880 vs. NCBI nr
Match: GER50709.1 (alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Striga asiatica])

HSP 1 Score: 110 bits (274), Expect = 4.65e-25
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 0

Query: 5   VGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGELAVD 64
           VGA  DGA G G AVLP +L +L+A P  EEGLV++VE V +DVVVGG VD+RA ELAVD
Sbjct: 752 VGAGEDGAHGAGGAVLPRVLALLNAGPCEEEGLVEMVEHVHDDVVVGGAVDLRARELAVD 811

Query: 65  EYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQEQ 111
           E ALLGDA+R DGAVG  P  E+VR+ G D      G+ +++G +++
Sbjct: 812 EDALLGDAERGDGAVGHFPFVEKVRVLGGD----AGGQADEDGYRDE 854

BLAST of Csor.00g223880 vs. NCBI nr
Match: OAY79989.1 (hypothetical protein ACMD2_04951, partial [Ananas comosus])

HSP 1 Score: 102 bits (255), Expect = 1.31e-22
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 1   MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGE 60
           +V EV A RDGA  PG AVLP +LP+LDA P +EE LV+ +  + N+V+VGG VDVRAGE
Sbjct: 422 VVSEVPAGRDGAVRPGHAVLPRVLPLLDAIPTHEEWLVEKIVHIHNNVIVGGRVDVRAGE 481

Query: 61  LAVDEYALLGDAKRRDGAVGDLPSEEEVRIF 91
           LAVDE  LLG ++RRD AV D+P E E+R+ 
Sbjct: 482 LAVDEDGLLGKSQRRDRAVRDVPREVEIRVL 512

BLAST of Csor.00g223880 vs. NCBI nr
Match: ACR35305.1 (unknown [Zea mays])

HSP 1 Score: 92.0 bits (227), Expect = 9.71e-19
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 0

Query: 2   VGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGEL 61
           VGEVGA RD A  PG AVL  + P+L+ AP  EE LV++VEDVD++VVVG G+D+R  EL
Sbjct: 446 VGEVGARRDRARRPGHAVLERVPPLLEPAPGEEERLVELVEDVDDEVVVGDGLDLRPREL 505

Query: 62  AVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQE 110
            VD+  LL DA+R D AVG  P EE VR+  A   +R      ++G+Q+
Sbjct: 506 VVDQDPLLLDAQRVDVAVGHRPREEPVRVV-AGHEQRQRQRQAEDGEQD 553

BLAST of Csor.00g223880 vs. ExPASy TrEMBL
Match: A0A4D9A2T6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_023851 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 3.04e-26
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 0

Query: 1   MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGE 60
           +VG VGA RDGA G G+A+LP +L +LDA P  E+GLV+VVEDVD+DVVVGG +D  AGE
Sbjct: 94  LVGHVGAGRDGAVGAGEALLPRVLALLDAVPREEDGLVEVVEDVDDDVVVGGAIDAGAGE 153

Query: 61  LAVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEG 107
           L VD   LLG A+ R+G V D+P  E V + G  R E+   E E+EG
Sbjct: 154 LVVDGDDLLGGAEGREGRVFDIPRVEVVGVLGVGRAEK-EEEEEREG 199

BLAST of Csor.00g223880 vs. ExPASy TrEMBL
Match: A0A5A7R004 (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Striga asiatica OX=4170 GN=STAS_28030 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 2.25e-25
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 0

Query: 5   VGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGELAVD 64
           VGA  DGA G G AVLP +L +L+A P  EEGLV++VE V +DVVVGG VD+RA ELAVD
Sbjct: 752 VGAGEDGAHGAGGAVLPRVLALLNAGPCEEEGLVEMVEHVHDDVVVGGAVDLRARELAVD 811

Query: 65  EYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQEQ 111
           E ALLGDA+R DGAVG  P  E+VR+ G D      G+ +++G +++
Sbjct: 812 EDALLGDAERGDGAVGHFPFVEKVRVLGGD----AGGQADEDGYRDE 854

BLAST of Csor.00g223880 vs. ExPASy TrEMBL
Match: A0A199VSF6 (Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_04951 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 6.36e-23
Identity = 54/91 (59.34%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 1   MVGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGE 60
           +V EV A RDGA  PG AVLP +LP+LDA P +EE LV+ +  + N+V+VGG VDVRAGE
Sbjct: 422 VVSEVPAGRDGAVRPGHAVLPRVLPLLDAIPTHEEWLVEKIVHIHNNVIVGGRVDVRAGE 481

Query: 61  LAVDEYALLGDAKRRDGAVGDLPSEEEVRIF 91
           LAVDE  LLG ++RRD AV D+P E E+R+ 
Sbjct: 482 LAVDEDGLLGKSQRRDRAVRDVPREVEIRVL 512

BLAST of Csor.00g223880 vs. ExPASy TrEMBL
Match: C4J2A5 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.70e-19
Identity = 56/109 (51.38%), Postives = 73/109 (66.97%), Query Frame = 0

Query: 2   VGEVGASRDGAGGPGKAVLPAILPVLDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGEL 61
           VGEVGA RD A  PG AVL  + P+L+ AP  EE LV++VEDVD++VVVG G+D+R  EL
Sbjct: 446 VGEVGARRDRARRPGHAVLERVPPLLEPAPGEEERLVELVEDVDDEVVVGDGLDLRPREL 505

Query: 62  AVDEYALLGDAKRRDGAVGDLPSEEEVRIFGADRPERCSGETEQEGKQE 110
            VD+  LL DA+R D AVG  P EE VR+  A   +R      ++G+Q+
Sbjct: 506 VVDQDPLLLDAQRVDVAVGHRPREEPVRVV-AGHEQRQRQRQAEDGEQD 553

BLAST of Csor.00g223880 vs. ExPASy TrEMBL
Match: A0A426ZLH2 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00026448 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.52e-18
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 0

Query: 27  LDAAPMNEEGLVQVVEDVDNDVVVGGGVDVRAGELAVDEYALLGDAKRRDGAVGDLPSEE 86
           ++  P  EEGLV++VEDV +DVVVGGGVDV  GELAVDE  LL DA+RR GAV D P EE
Sbjct: 17  MENRPGQEEGLVEMVEDVYDDVVVGGGVDVGTGELAVDEDDLLRDAERRGGAVRDAPREE 76

Query: 87  EVRIFGADRPERCSGETEQEGKQEQ 111
           EVR+   D     SGETE   K+++
Sbjct: 77  EVRVLCPD-----SGETENREKRKE 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6605820.12.93e-82100.00hypothetical protein SDJN03_03137, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6388164.16.27e-2656.07hypothetical protein SASPL_153363 [Salvia splendens][more]
GER50709.14.65e-2556.07alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Striga asiatica][more]
OAY79989.11.31e-2259.34hypothetical protein ACMD2_04951, partial [Ananas comosus][more]
ACR35305.19.71e-1951.38unknown [Zea mays][more]
Match NameE-valueIdentityDescription
A0A4D9A2T63.04e-2656.07Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_023851 PE=4 SV=1[more]
A0A5A7R0042.25e-2556.07Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Striga asiatica OX=4... [more]
A0A199VSF66.36e-2359.34Uncharacterized protein (Fragment) OS=Ananas comosus OX=4615 GN=ACMD2_04951 PE=4... [more]
C4J2A54.70e-1951.38Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1[more]
A0A426ZLH21.52e-1858.82Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00026448 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g223880.m01Csor.00g223880.m01mRNA