Csor.00g223740 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g223740
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionarabinogalactan peptide 13-like
LocationCsor_Chr02: 7248049 .. 7248372 (+)
RNA-Seq ExpressionCsor.00g223740
SyntenyCsor.00g223740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATCATAAATAGGCTCTTCTTCCCCCTCTCAAAGCCCACACCCACGCCCACGCCCACTGTTCTTCTTCAATTCAACAGCAGCCCAAAGCCAGGAGGGAAAGGTCTGCAAATCTCACAACACATCATTCATTCAGCAATGGAAGCAATGAAGTTGAAGCTTTTCCTGGTGCTGCTGGTGTTGGTGGCCTTTGCCGGCACCATGGCCCAAGCTGCTGCTCCTTCTGAGGCTCCTGCTCCTGCTCCTGCCTCAGATGCTCCTCTTATTTACTCCTCCTTCTTTGCTTCTCTATCTGGACTTGTTTTTGCTTACTTCCTTTAA

mRNA sequence

ATGTGCATCATAAATAGGCTCTTCTTCCCCCTCTCAAAGCCCACACCCACGCCCACGCCCACTGTTCTTCTTCAATTCAACAGCAGCCCAAAGCCAGGAGGGAAAGGTCTGCAAATCTCACAACACATCATTCATTCAGCAATGGAAGCAATGAAGTTGAAGCTTTTCCTGGTGCTGCTGGTGTTGGTGGCCTTTGCCGGCACCATGGCCCAAGCTGCTGCTCCTTCTGAGGCTCCTGCTCCTGCTCCTGCCTCAGATGCTCCTCTTATTTACTCCTCCTTCTTTGCTTCTCTATCTGGACTTGTTTTTGCTTACTTCCTTTAA

Coding sequence (CDS)

ATGTGCATCATAAATAGGCTCTTCTTCCCCCTCTCAAAGCCCACACCCACGCCCACGCCCACTGTTCTTCTTCAATTCAACAGCAGCCCAAAGCCAGGAGGGAAAGGTCTGCAAATCTCACAACACATCATTCATTCAGCAATGGAAGCAATGAAGTTGAAGCTTTTCCTGGTGCTGCTGGTGTTGGTGGCCTTTGCCGGCACCATGGCCCAAGCTGCTGCTCCTTCTGAGGCTCCTGCTCCTGCTCCTGCCTCAGATGCTCCTCTTATTTACTCCTCCTTCTTTGCTTCTCTATCTGGACTTGTTTTTGCTTACTTCCTTTAA

Protein sequence

MCIINRLFFPLSKPTPTPTPTVLLQFNSSPKPGGKGLQISQHIIHSAMEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL
Homology
BLAST of Csor.00g223740 vs. ExPASy Swiss-Prot
Match: Q9LVC0 (Arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=AGP14 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.2e-05
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYF 107
           MEAMK+KL++V+LV V    T+ Q  A  +APAP+P SDA     +FFAS++ + F +F
Sbjct: 1   MEAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFF 59

BLAST of Csor.00g223740 vs. ExPASy Swiss-Prot
Match: Q9STQ3 (Arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=AGP13 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAY 106
           MEAMK++LF+ +LV  A A +  Q AA  EAPAP+P SDA L   +FFAS++ L F +
Sbjct: 1   MEAMKMRLFVAVLV-AAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

BLAST of Csor.00g223740 vs. NCBI nr
Match: KAG6605834.1 (Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (502), Expect = 1.97e-63
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MCIINRLFFPLSKPTPTPTPTVLLQFNSSPKPGGKGLQISQHIIHSAMEAMKLKLFLVLL 60
           MCIINRLFFPLSKPTPTPTPTVLLQFNSSPKPGGKGLQISQHIIHSAMEAMKLKLFLVLL
Sbjct: 1   MCIINRLFFPLSKPTPTPTPTVLLQFNSSPKPGGKGLQISQHIIHSAMEAMKLKLFLVLL 60

Query: 61  VLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           VLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL
Sbjct: 61  VLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107

BLAST of Csor.00g223740 vs. NCBI nr
Match: XP_022944304.1 (arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 5.15e-18
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           MEA+KLKLFLV+L LVAFA T AQ AAPSEAPAPAPASDAPL Y +FFASLS LVFA+FL
Sbjct: 1   MEAIKLKLFLVML-LVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

BLAST of Csor.00g223740 vs. NCBI nr
Match: XP_038902540.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 79.3 bits (194), Expect = 4.20e-17
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           MEA+KLKLFLVLL L+AFAGT+AQ+A PSEAPAPAPASDA L Y +FFASLS L+FA+FL
Sbjct: 1   MEAIKLKLFLVLL-LMAFAGTIAQSATPSEAPAPAPASDASLFYPTFFASLSALLFAFFL 59

BLAST of Csor.00g223740 vs. NCBI nr
Match: KAG6570311.1 (hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 2.50e-16
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 47  AMEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYF 106
           AMEA+KLKLFLV+L LVAFA T AQ AAPSEAPAPAPASDAPL   +FFASLS LVFA+F
Sbjct: 82  AMEAIKLKLFLVML-LVAFAATTAQPAAPSEAPAPAPASDAPLFNPTFFASLSALVFAFF 141

BLAST of Csor.00g223740 vs. NCBI nr
Match: XP_023513159.1 (arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 70.9 bits (172), Expect = 8.76e-14
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           MEA+KLKL LV+L LVAFA T AQ AAPSEAPAPA  SDAPL Y +FFASLS LVFA+FL
Sbjct: 1   MEAIKLKLLLVML-LVAFAATTAQPAAPSEAPAPA--SDAPLFYPTFFASLSALVFAFFL 57

BLAST of Csor.00g223740 vs. ExPASy TrEMBL
Match: A0A6J1J5K6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.49e-18
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           MEA+KLKLFLV+L LVAFA T AQ AAPSEAPAPAPASDAPL Y +FFASLS LVFA+FL
Sbjct: 1   MEAIKLKLFLVML-LVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

BLAST of Csor.00g223740 vs. ExPASy TrEMBL
Match: A0A6J1FWG8 (arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.49e-18
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           MEA+KLKLFLV+L LVAFA T AQ AAPSEAPAPAPASDAPL Y +FFASLS LVFA+FL
Sbjct: 1   MEAIKLKLFLVML-LVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

BLAST of Csor.00g223740 vs. ExPASy TrEMBL
Match: A0A498IKT8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_009264 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.74e-06
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLV--LVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAY 106
           MEAMK+ LF+ LLV  +VAF+G    AAA +EAPAP+P SDA     +FFASL+ L F  
Sbjct: 1   MEAMKMNLFVALLVVMMVAFSGIQQVAAAAAEAPAPSPTSDAFTFAPTFFASLAALAFGL 60

BLAST of Csor.00g223740 vs. ExPASy TrEMBL
Match: A0A438JV44 (Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.59e-06
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           MEAMK+KLFL +++++  A +  Q AA + APAPAPASDA +   +FFASL+ L F + L
Sbjct: 1   MEAMKMKLFLAVVMMI-LAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

BLAST of Csor.00g223740 vs. ExPASy TrEMBL
Match: F6GUN4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.59e-06
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107
           MEAMK+KLFL +++++  A +  Q AA + APAPAPASDA +   +FFASL+ L F + L
Sbjct: 1   MEAMKMKLFLAVVMMI-LAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

BLAST of Csor.00g223740 vs. TAIR 10
Match: AT5G56540.1 (arabinogalactan protein 14 )

HSP 1 Score: 47.8 bits (112), Expect = 6.5e-06
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYF 107
           MEAMK+KL++V+LV V    T+ Q  A  +APAP+P SDA     +FFAS++ + F +F
Sbjct: 1   MEAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFF 59

BLAST of Csor.00g223740 vs. TAIR 10
Match: AT4G26320.1 (arabinogalactan protein 13 )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAY 106
           MEAMK++LF+ +LV  A A +  Q AA  EAPAP+P SDA L   +FFAS++ L F +
Sbjct: 1   MEAMKMRLFVAVLV-AAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

BLAST of Csor.00g223740 vs. TAIR 10
Match: AT3G13520.1 (arabinogalactan protein 12 )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAY 106
           ME+MK+KL +VL+V +     +   AA +EAPAP+P SDA +   + FAS++ L   +
Sbjct: 1   MESMKMKLIVVLMVAIVAFSAVGNVAAQTEAPAPSPTSDAAMFVPALFASVAALASGF 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LVC09.2e-0547.46Arabinogalactan protein 14 OS=Arabidopsis thaliana OX=3702 GN=AGP14 PE=1 SV=1[more]
Q9STQ31.6e-0451.72Arabinogalactan protein 13 OS=Arabidopsis thaliana OX=3702 GN=AGP13 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KAG6605834.11.97e-63100.00Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022944304.15.15e-1881.67arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogala... [more]
XP_038902540.14.20e-1778.33arabinogalactan protein 13-like [Benincasa hispida][more]
KAG6570311.12.50e-1680.33hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023513159.18.76e-1476.67arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1J5K62.49e-1881.67arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3... [more]
A0A6J1FWG82.49e-1881.67arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE... [more]
A0A498IKT81.74e-0655.74Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_009264 PE=3 SV=1[more]
A0A438JV444.59e-0651.67Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1[more]
F6GUN44.59e-0651.67Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT5G56540.16.5e-0647.46arabinogalactan protein 14 [more]
AT4G26320.11.1e-0551.72arabinogalactan protein 13 [more]
AT3G13520.11.6e-0441.38arabinogalactan protein 12 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039281Arabinogalactan protein 3/12/13/14/21PANTHERPTHR34114ARABINOGALACTAN PEPTIDE 1coord: 36..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g223740.m01Csor.00g223740.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane