Csor.00g222290 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g222290
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	DNA polymerase epsilon subunit 3
Location	Csor_Chr02: 8079082 .. 8081362 (+)
RNA-Seq Expression	Csor.00g222290
Synteny	Csor.00g222290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAAAGTTGGGGCTGAGATCGAAGAGCTTCCGAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGAACCAGGATATTTCCGTCAACAAAGATTCGCTCCTAGCCTTTTGCGAGAGCGCTCGGATCTTCATTCATTACCTCTCCGCAACGTAAGTACCGCATCCTGCCTTTTTTTTTGAATCCTGAATGAAATTCTATCGATTCTGATGTTCGAAATTAGGGTTCGTTGTTTCTCTTCTGTGTGCCTGAAGAACGAAAGCGAAAGAGATTAAAGTGATGAATCTCTTGTTGTTATGGCGCTAGGATTAAATAAATTGTTGTTATGTATTAGTTAATTTTTGCGTTCGTATTGACTGGTTGATCTCTAAGCAGGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTTAAGGCTTCCCTCAATGGTGCGTTAGGTTCTAACCACTCAGTTTACCTTTTTTTTTTCTCCGGAAAATCATTACTCATTGGAGCATGAAATTGCACGATTAATTGGATAACTACGTTTTGATAGTTGTAACTTGAAGAACATTCTTTAAAAGCCGAAAGATGATCTAATGGTTCTCTTTTATTTGGTTGCTAGCATGAACTTGTTTTTATGCTCTTGCATGATTTCGTTGCCTAAAATGTCTGGTATTCTAGACTTTCAATCTCGATTTTGATGAATTTCGTTAACACTTCAGGAGCGTGAAATATTGCACGGCTATTGTGCAAAGAGGCCGTTAACATTATAAGAAAATTCTTATCAGTTCCTCAAACATCCAAGACGAGTCGATTTGGCATCATGATAGGATAGAGTTCTCATGTGAAAAGTGGATACAAGGTACAAAATGCAAGTCTGAAGGACTGAGCCGTTAGTTTCTGTAGTTGAATTGTTCATGTAGTATAAGAAGACTGTAGGAATTCATCTCAATCTCCTTGCCTAGTTTAGGGAAGAAATCAATTGCTCCTTTGTTTTAGAAAGAATTCCTATTCATTGAGTGGGGTATTGGTGAAAGTTTTTGCTGCATGACTCTTTCTACAATAGAACTCTTGTGACAAAAGAAAAGCGGATTTTTCGAAGTTCCCTCTTTAATTCCTATGAACTCTTGCTTGACATAAAAAATGTATAATTAATCATTTACCTGAGGTTCTACTTGATTGATCTTCAAGTTGGGGGAATATAATTTAGAGTTCAAGTAACCCATGCATGCCTTTTATCAAAAATTTATTATTCGATTAGATTGAATAATCTTTCATTAAATAAATATTCAAGTGCTTATGAATCCTTGGAGGTTTTTGTTGGATCTATCTTTAGTTATGTTGTCTATTTGTATTAGTAGAAGTATATACTTGGACCATTTTGAAAATTAGGTAAAGTGAGCAAGATTTCTATTTACTGGTGTGTAACCAGGCTCTACTAGTTATATTTCATCTGTCGTTGGACATGTGAGGTTTTATATGGAATCTGATTATACTTTATATTCTTGATATGAAAGATTGTATGAGATCCTTTATTAATGATTTATATAGTGGTTTATGAAATTTTTATACTGCAGTACGAGTTCAATGTGTAGATACTTTCTTTTCTCTTGATTATTAGGCAGGATGGGTAATTGTCATGCTACAGTATGCCTACTCTTTTCAGATAATATATGAAACTAAGCTATTTTCCTATCTTGGACGACGAGTAATGGGGTCTTGAGCTAAGCCTTGGAAGTTTTAGTGCCATAATGCCTTCCAAATCCTCCTAGCCATTATCCGACTTCTACGTCATTTGATATCTGTGGTTAATTTAATGACAAAAGAAATGTTGAATTTATTGTACGAAGAAAGCACTTTTACTTTCCGCAGGCTATGATTTTCTATGGCATTTTCAAACTTTTATCCAGGATGAGTATGAAAGAAAGCTAGTTGAACCTTTTTAATGATTTATTATGCAACCTTGGCTTGGCTGAATGTAGAATTCAGAAGTAAGAATGCTGGAAAGAAGGCAGCTGCGTCCAGGATAAAAGAAGCGAAAAAGAGGAAGATAGAAGAAGAGCCTACAGTTGAAGGTACTGATGGTGAAAGCAAAGATGATGTCGAAAATGACAATGATGATAACGATGACGGTAACGATAAAGATAAAGATGAAGATGAAGATGAAGTTGAAGATGAAGATGAAGTTGAGAATGGTGGCAGTGATGACTGA

mRNA sequence

ATGGAGAAAAAAGTTGGGGCTGAGATCGAAGAGCTTCCGAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGAACCAGGATATTTCCGTCAACAAAGATTCGCTCCTAGCCTTTTGCGAGAGCGCTCGGATCTTCATTCATTACCTCTCCGCAACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTTAAGGCTTCCCTCAATGAATTCAGAAGTAAGAATGCTGGAAAGAAGGCAGCTGCGTCCAGGATAAAAGAAGCGAAAAAGAGGAAGATAGAAGAAGAGCCTACAGTTGAAGGTACTGATGGTGAAAGCAAAGATGATGTCGAAAATGACAATGATGATAACGATGACGGTAACGATAAAGATAAAGATGAAGATGAAGATGAAGTTGAAGATGAAGATGAAGTTGAGAATGGTGGCAGTGATGACTGA

Coding sequence (CDS)

ATGGAGAAAAAAGTTGGGGCTGAGATCGAAGAGCTTCCGAAGACTATAGTTCGCCGAGTGGTTAAAGAGAAGCTTTCTCAGTGCTCTCGGAACCAGGATATTTCCGTCAACAAAGATTCGCTCCTAGCCTTTTGCGAGAGCGCTCGGATCTTCATTCATTACCTCTCCGCAACGTCGAATGATATATGCAAGGAATCGAAGAGGCAGACGATTAAGGCGGAAGATGTATTGAAAGCTCTAGAAGATATGGAATTTCCCGAGTTGGTTAGGCCTCTTAAGGCTTCCCTCAATGAATTCAGAAGTAAGAATGCTGGAAAGAAGGCAGCTGCGTCCAGGATAAAAGAAGCGAAAAAGAGGAAGATAGAAGAAGAGCCTACAGTTGAAGGTACTGATGGTGAAAGCAAAGATGATGTCGAAAATGACAATGATGATAACGATGACGGTAACGATAAAGATAAAGATGAAGATGAAGATGAAGTTGAAGATGAAGATGAAGTTGAGAATGGTGGCAGTGATGACTGA

Protein sequence

MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD

Homology

[Close]

BLAST of Csor.00g222290 vs. ExPASy Swiss-Prot
Match: Q3SZN5 (DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 49/162 (30.25%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K           
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK----------- 129

Query: 132 GESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 174
                    D+++ D   D+D DEDE+ +E+E++ E    D+
Sbjct: 130 --------TDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of Csor.00g222290 vs. ExPASy Swiss-Prot
Match: Q9NRF9 (DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 49/162 (30.25%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K           
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK----------- 129

Query: 132 GESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 174
                    D+++ D   D+D DEDE+ +E+E++ E    D+
Sbjct: 130 --------TDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of Csor.00g222290 vs. ExPASy Swiss-Prot
Match: Q5R4W3 (DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-08
Identity = 49/162 (30.25%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K           
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK----------- 129

Query: 132 GESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 174
                    D+++ D   D+D DEDE+ +E+E++ E    D+
Sbjct: 130 --------TDSEEQDKSRDEDNDEDEERLEEEEQNEEEEVDN 147

[Close]

BLAST of Csor.00g222290 vs. ExPASy Swiss-Prot
Match: Q642A5 (DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-08
Identity = 45/151 (29.80%), Postives = 87/151 (57.62%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   V PLK +L  +R +  GKK A+ + K+ K +K          D
Sbjct: 70  NASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKK----------D 129

Query: 132 GESKDDVENDNDDNDDGNDKDKDEDEDEVED 163
            E +D    + D++++  D+++  +E+EV++
Sbjct: 130 CEEQDKSREEEDEDEERLDEEEQNEEEEVDN 145

[Close]

BLAST of Csor.00g222290 vs. ExPASy Swiss-Prot
Match: Q9JKP7 (DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-08
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 12  LPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKRQTI 71
           LP  ++ R++KE L        ++++K++  A   +A +F+ Y ++ +N+   + KR+T+
Sbjct: 10  LPNAVITRIIKEALP-----DGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKTL 69

Query: 72  KAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRKIEEEPTVEGTD 131
            A DVL A+E+MEF   + PLK +L  +R    GKK A+ + K+ K +K  EE       
Sbjct: 70  NASDVLSAMEEMEFQRFITPLKEALEAYRRDEKGKKEASEQKKKDKDKKDSEEQ------ 129

Query: 132 GESKDDVENDNDDNDDGNDKDKDEDED 159
            +   +VE ++++  D +D++++E+ D
Sbjct: 130 -DKSREVEEEDEERLDEDDQNEEEEID 144

[Close]

BLAST of Csor.00g222290 vs. NCBI nr
Match: KAG6605978.1 (DNA polymerase epsilon subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 304 bits (778), Expect = 2.18e-103
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173
           IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173

[Close]

BLAST of Csor.00g222290 vs. NCBI nr
Match: XP_022958709.1 (DNA polymerase epsilon subunit 3 [Cucurbita moschata] >XP_022958710.1 DNA polymerase epsilon subunit 3 [Cucurbita moschata])

HSP 1 Score: 286 bits (733), Expect = 1.19e-96
Identity = 165/173 (95.38%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173
           IEEEPTVEGTDGESKDDVENDNDDNDDGNDKD        EDEDEVENGGSDD
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKD--------EDEDEVENGGSDD 165

[Close]

BLAST of Csor.00g222290 vs. NCBI nr
Match: XP_022995161.1 (DNA polymerase epsilon subunit 3 [Cucurbita maxima])

HSP 1 Score: 285 bits (728), Expect = 8.79e-96
Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESAR+FIHYLSATSN
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173
           IEEEPTVEGTDGESKDDVENDNDD+DD NDKD+DEDED+    DEVENGGSDD
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDK----DEVENGGSDD 169

[Close]

BLAST of Csor.00g222290 vs. NCBI nr
Match: KAG7035929.1 (DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (724), Expect = 2.81e-95
Identity = 164/173 (94.80%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173
           IEEEPTVEGTDGESKDDVENDNDDND        +DEDEVEDEDEVENGGSDD
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDND--------KDEDEVEDEDEVENGGSDD 165

[Close]

BLAST of Csor.00g222290 vs. NCBI nr
Match: XP_023533668.1 (DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo] >XP_023533669.1 DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281 bits (719), Expect = 1.63e-94
Identity = 162/173 (93.64%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173
           IEEEPTVEGTDGESKDDVENDNDD+D+GND+D        EDEDEVENGGSDD
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDNGNDED--------EDEDEVENGGSDD 165

[Close]

BLAST of Csor.00g222290 vs. ExPASy TrEMBL
Match: A0A6J1H495 (DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 PE=4 SV=1)

HSP 1 Score: 286 bits (733), Expect = 5.79e-97
Identity = 165/173 (95.38%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173
           IEEEPTVEGTDGESKDDVENDNDDNDDGNDKD        EDEDEVENGGSDD
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKD--------EDEDEVENGGSDD 165

[Close]

BLAST of Csor.00g222290 vs. ExPASy TrEMBL
Match: A0A6J1K184 (DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=4 SV=1)

HSP 1 Score: 285 bits (728), Expect = 4.25e-96
Identity = 164/173 (94.80%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESAR+FIHYLSATSN
Sbjct: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARVFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSDD 173
           IEEEPTVEGTDGESKDDVENDNDD+DD NDKD+DEDED+    DEVENGGSDD
Sbjct: 121 IEEEPTVEGTDGESKDDVENDNDDDDDDNDKDEDEDEDK----DEVENGGSDD 169

[Close]

BLAST of Csor.00g222290 vs. ExPASy TrEMBL
Match: A0A6J1DJA4 (DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 PE=4 SV=1)

HSP 1 Score: 242 bits (617), Expect = 2.63e-79
Identity = 147/172 (85.47%), Postives = 152/172 (88.37%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKKV AEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN
Sbjct: 1   MEKKVAAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKA+DVLKALEDMEFPELVRPLKASLNEFR K+AGKKAAASR KEAKK++
Sbjct: 61  DICKESKRQTIKADDVLKALEDMEFPELVRPLKASLNEFRRKSAGKKAAASREKEAKKKR 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDEDEVEDEDEVENGGSD 172
             EEPTVE    ESKDDV ND+      ND D DEDEDEVEDEDE ENG SD
Sbjct: 121 KIEEPTVED---ESKDDVGNDD------NDNDHDEDEDEVEDEDEEENGASD 163

[Close]

BLAST of Csor.00g222290 vs. ExPASy TrEMBL
Match: A0A0A0KEV7 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G425700 PE=4 SV=1)

HSP 1 Score: 233 bits (593), Expect = 1.04e-75
Identity = 137/157 (87.26%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKK+G   EELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKIGGGNEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASL+EFR KNAGKKAAASR KEAKK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLDEFRRKNAGKKAAASREKEAKKKR 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDEDE 157
             EEPTVEGTDGES DDV ND  DNDD ND+D+DEDE
Sbjct: 121 KVEEPTVEGTDGESIDDVGND--DNDD-NDEDEDEDE 154

[Close]

BLAST of Csor.00g222290 vs. ExPASy TrEMBL
Match: A0A1S3BNA4 (DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 1.38e-72
Identity = 130/155 (83.87%), Postives = 137/155 (88.39%), Query Frame = 0


Query: 1   MEKKVGAEIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSN 60
           MEKK+ A IEELPKTIVRRVVKEKLSQCSR+QDISVNKDSLLAFCESARIFIHYLSAT+N
Sbjct: 1   MEKKIVAGIEELPKTIVRRVVKEKLSQCSRDQDISVNKDSLLAFCESARIFIHYLSATAN 60

Query: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKAAASRIKEAKKRK 120
           DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFR KNAGKKAAA R KE KK++
Sbjct: 61  DICKESKRQTIKAEDVLKALEDMEFPELVRPLKASLNEFRRKNAGKKAAALREKEVKKKR 120

Query: 121 IEEEPTVEGTDGESKDDVENDNDDNDDGNDKDKDE 155
             EEPTVEGTDGES D V       DD ND+D+DE
Sbjct: 121 KVEEPTVEGTDGESIDGV------GDDDNDEDEDE 149

[Close]

BLAST of Csor.00g222290 vs. TAIR 10
Match: AT2G27470.1 (nuclear factor Y, subunit B11 )

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-33
Identity = 96/195 (49.23%), Postives = 135/195 (69.23%), Query Frame = 0


Query: 9   IEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESKR 68
           ++ELP  IVRRVVK+KLS+CS + D+S++K++LLAF ESARIFIHYLSAT+ND CK+++R
Sbjct: 8   VDELPLAIVRRVVKKKLSECSPDYDVSIHKEALLAFSESARIFIHYLSATANDFCKDARR 67

Query: 69  QTIKAEDVLKALEDMEFPELVRPLKASLNEFRSKNAGKKA-------------------A 128
           QT+KA+DV KALE+M+F E + PLK+SL +F+ KNAGKKA                    
Sbjct: 68  QTMKADDVFKALEEMDFSEFLEPLKSSLEDFKKKNAGKKAGAAAASYPAGGAALKSSSGT 127

Query: 129 ASRIKEAKKRKIEEEPTVEGT-----DGESK---DDVENDNDDNDDGNDKDKD---EDED 174
           AS+ KE KKRK EE  T +G      D E+K   ++ ENDN + ++GND++ +   ++ED
Sbjct: 128 ASKPKETKKRKQEEPSTQKGARKSKIDEETKRNDEETENDNTEEENGNDEEDENGNDEED 187

[Close]

BLAST of Csor.00g222290 vs. TAIR 10
Match: AT5G23090.2 (nuclear factor Y, subunit B13 )

HSP 1 Score: 48.1 bits (113), Expect = 8.1e-06
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E +  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of Csor.00g222290 vs. TAIR 10
Match: AT5G23090.1 (nuclear factor Y, subunit B13 )

HSP 1 Score: 48.1 bits (113), Expect = 8.1e-06
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E +  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of Csor.00g222290 vs. TAIR 10
Match: AT5G23090.4 (nuclear factor Y, subunit B13 )

HSP 1 Score: 48.1 bits (113), Expect = 8.1e-06
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SND+C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----PDVRVARDAQDLLIECCVEFINLVSSESNDVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E +  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHK 99

[Close]

BLAST of Csor.00g222290 vs. TAIR 10
Match: AT5G08190.1 (nuclear factor Y, subunit B12 )

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-05
Identity = 29/93 (31.18%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 8   EIEELPKTIVRRVVKEKLSQCSRNQDISVNKDSLLAFCESARIFIHYLSATSNDICKESK 67
           E   LPK  + +++KE L       D+ V +D+     E    FI+ +S+ SN++C +  
Sbjct: 12  EDASLPKATMTKIIKEMLP-----ADVRVARDAQDLLIECCVEFINLISSESNEVCNKED 71

Query: 68  RQTIKAEDVLKALEDMEFPELVRPLKASLNEFR 101
           ++TI  E VLKAL+ + F E V  + A+  + +
Sbjct: 72  KRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHK 99

The following BLAST results are available for this feature:

BLAST of Csor.00g222290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3SZN5	1.0e-08	30.25	DNA polymerase epsilon subunit 3 OS=Bos taurus OX=9913 GN=POLE3 PE=2 SV=1	[more]
Q9NRF9	1.0e-08	30.25	DNA polymerase epsilon subunit 3 OS=Homo sapiens OX=9606 GN=POLE3 PE=1 SV=1	[more]
Q5R4W3	1.0e-08	30.25	DNA polymerase epsilon subunit 3 OS=Pongo abelii OX=9601 GN=POLE3 PE=2 SV=1	[more]
Q642A5	3.8e-08	29.80	DNA polymerase epsilon subunit 3 OS=Rattus norvegicus OX=10116 GN=Pole3 PE=1 SV=...	[more]
Q9JKP7	4.9e-08	29.93	DNA polymerase epsilon subunit 3 OS=Mus musculus OX=10090 GN=Pole3 PE=1 SV=1	[more]

BLAST of Csor.00g222290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605978.1	2.18e-103	100.00	DNA polymerase epsilon subunit 3, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022958709.1	1.19e-96	95.38	DNA polymerase epsilon subunit 3 [Cucurbita moschata] >XP_022958710.1 DNA polyme...	[more]
XP_022995161.1	8.79e-96	94.80	DNA polymerase epsilon subunit 3 [Cucurbita maxima]	[more]
KAG7035929.1	2.81e-95	94.80	DNA polymerase epsilon subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533668.1	1.63e-94	93.64	DNA polymerase epsilon subunit 3 [Cucurbita pepo subsp. pepo] >XP_023533669.1 DN...	[more]

BLAST of Csor.00g222290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H495	5.79e-97	95.38	DNA polymerase epsilon subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111459853 P...	[more]
A0A6J1K184	4.25e-96	94.80	DNA polymerase epsilon subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111490783 PE=...	[more]
A0A6J1DJA4	2.63e-79	85.47	DNA polymerase epsilon subunit 3 OS=Momordica charantia OX=3673 GN=LOC111020575 ...	[more]
A0A0A0KEV7	1.04e-75	87.26	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G4257...	[more]
A0A1S3BNA4	1.38e-72	83.87	DNA polymerase epsilon subunit D OS=Cucumis melo OX=3656 GN=LOC103491421 PE=4 SV...	[more]

BLAST of Csor.00g222290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27470.1	1.6e-33	49.23	nuclear factor Y, subunit B11	[more]
AT5G23090.2	8.1e-06	31.18	nuclear factor Y, subunit B13	[more]
AT5G23090.1	8.1e-06	31.18	nuclear factor Y, subunit B13	[more]
AT5G23090.4	8.1e-06	31.18	nuclear factor Y, subunit B13	[more]
AT5G08190.1	1.4e-05	31.18	nuclear factor Y, subunit B12	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 11..80 e-value: 8.0E-9 score: 35.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 5..170 e-value: 3.5E-32 score: 113.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 12..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..173
None	No IPR available	PANTHER	PTHR46172	DNA POLYMERASE EPSILON SUBUNIT 3	coord: 3..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g222290.m01	Csor.00g222290.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0031507	heterochromatin assembly
biological_process	GO:0006272	leading strand elongation
biological_process	GO:0042766	nucleosome mobilization
cellular_component	GO:0008623	CHRAC
cellular_component	GO:0008622	epsilon DNA polymerase complex
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046982	protein heterodimerization activity