Csor.00g222170 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g222170
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionTransmembrane 9 superfamily member
LocationCsor_Chr02: 8118742 .. 8119892 (+)
RNA-Seq ExpressionCsor.00g222170
SyntenyCsor.00g222170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalstop_codonterminal
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCGGAGAAATGGGGGAAAGAAGAGTTGCTAAAGGACTGGATAGACTACTCGACCTTCGATAGAATCTTGACTGCTGACAGAATCGGCGTCGGCAAGAGGGCGTCGCTTGTGGCGGGGGCGGCGGAGCAGCCCCCGATCCAGTTCACGGTCACCGTTGAGGGTAGAAAGTAGGTGTTGAGATGGAAATATGTATTGAAATTACTTTATAGATAAACAAACCCGGTTCATAAAAAATTATTGGCTCGCTTCGTCTTGTCAGTGATTTATTTCCTACGTTAAAGGTTGTAATTTATTAGTGTACTCGGGTTGAATTGAATTTTTTTTAATAAAATTTTATAAAATTCAAATATCAAACATTTACAAGCTACCGTGGATTACTAACATACGTTACAAAAATTTCTTAATTATCGTTCGGGTTTTGTTACGAACCATGTTTTTAAATAATCAGGTTGACCTGATTAAAAAATCTACCGTTCATAATTGAACCGAGCACAGGTTAATTATGGATTATACGAAAGAATTACATTTAATTATATAGTTTTTGAGCTATATTACTAAATTTTGTGAGCAAACGTTATTATTTGATAATTATTTATACCACGTGTTAATTACGTATTATATGAGAATCTATTTAAGTTTAATTGCTTATTATAAAATTTTGAAAGTACAATAACTAAATAAAATACATATGGTAGAAAAACGAGCCCATCAAGGCCCATGTTCAAGGCCCATTGGACAACAAGTTGGGCCAATATTGGGCCCAATATGAACATGGTCGTACAGCCCGGCCCATGATCGTGTTCTCAAAATTACGGTCCTCCTATCATAGGTTTATCACCGCGCCTTCTTTTTGGATCGCATCTCTTCGGTCGTCCATTATATATCTATTGTCAGCTGCCGTCGAAAAACCCTAGCTTAGCTTCTTCTCACCAGGTACGAATCTACACTCTTTCGAACTGAGATTTATTTTTGTTGAAACTGCTACTTAATTCTATTGCGCTGCGGCATTTTTTTTCGTCTTGTTTGTTCTTCCTTAATTTGATATTCAGTTCTTGTTTATCTCTATCTTGTATTTTTTACTCGTGTGGTTGTTCGTTTACTTCGTGTTTTGATTAGGTTTGTTCCTTTTTTCTTCTTTTCAGTGA

mRNA sequence

ATGGTGCCGGAGAAATGGGGGAAAGAAGAGTTGCTAAAGGACTGGATAGACTACTCGACCTTCGATAGAATCTTGACTGCTGACAGAATCGGCGTCGGCAAGAGGGCGTCGCTTGTGGCGGGGGCGGCGGAGCAGCCCCCGATCCAGTTCACGGTCACCGTTGAGGGTTTATCACCGCGCCTTCTTTTTGGATCGCATCTCTTCGGTCGTCCATTATATATCTATTGTCAGCTGCCGTCGAAAAACCCTAGCTTAGCTTCTTCTCACCAGTGA

Coding sequence (CDS)

ATGGTGCCGGAGAAATGGGGGAAAGAAGAGTTGCTAAAGGACTGGATAGACTACTCGACCTTCGATAGAATCTTGACTGCTGACAGAATCGGCGTCGGCAAGAGGGCGTCGCTTGTGGCGGGGGCGGCGGAGCAGCCCCCGATCCAGTTCACGGTCACCGTTGAGGGTTTATCACCGCGCCTTCTTTTTGGATCGCATCTCTTCGGTCGTCCATTATATATCTATTGTCAGCTGCCGTCGAAAAACCCTAGCTTAGCTTCTTCTCACCAGTGA

Protein sequence

MVPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAEQPPIQFTVTVEGLSPRLLFGSHLFGRPLYIYCQLPSKNPSLASSHQ
Homology
[Close]
BLAST of Csor.00g222170 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-04
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 2  VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAE 45
          +P+ WGKE LL  W+D+STFD   T+ +I V  RA+L+A + +
Sbjct: 57 IPDSWGKEGLLMGWMDFSTFDAAFTSSQI-VSARAALMADSGD 98

[Close]
BLAST of Csor.00g222170 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.3e-04
Identity = 20/35 (57.14%), Postives = 23/35 (65.71%), Query Frame = 0 

Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRA 37
           +PE WG+EELLKDWID STFD  L    I   + A
Sbjct: 83  IPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTA 117

[Close]
BLAST of Csor.00g222170 vs. NCBI nr
Match: KAG6605990.1 (hypothetical protein SDJN03_03307, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189 bits (479), Expect = 1.85e-60
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0 

Query: 1  MVPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAEQPPIQFTVTVEGLSPR 60
          MVPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAEQPPIQFTVTVEGLSPR
Sbjct: 1  MVPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAEQPPIQFTVTVEGLSPR 60

Query: 61 LLFGSHLFGRPLYIYCQLPSKNPSLASSHQ 90
          LLFGSHLFGRPLYIYCQLPSKNPSLASSHQ
Sbjct: 61 LLFGSHLFGRPLYIYCQLPSKNPSLASSHQ 90

[Close]
BLAST of Csor.00g222170 vs. NCBI nr
Match: KAG7035940.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (357), Expect = 1.77e-38
Identity = 73/93 (78.49%), Postives = 75/93 (80.65%), Query Frame = 0 

Query: 1   MVPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAEQPPIQFT---VTVEGL 60
           MVPEKWGKEELLKDWIDYSTFDRILTADRI    RASLVA      P   +   + VE L
Sbjct: 41  MVPEKWGKEELLKDWIDYSTFDRILTADRIA-SARASLVAEGRRSSPRSSSRSPLRVESL 100

Query: 61  SPRLLFGSHLFGRPLYIYCQLPSKNPSLASSHQ 90
           SPRLLFGSHLFGRPLYIYCQLPSKNPSLASSHQ
Sbjct: 101 SPRLLFGSHLFGRPLYIYCQLPSKNPSLASSHQ 132

[Close]
BLAST of Csor.00g222170 vs. NCBI nr
Match: KAG7010351.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.9 bits (167), Expect = 2.81e-11
Identity = 35/55 (63.64%), Postives = 36/55 (65.45%), Query Frame = 0 

Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAEQPPIQFTVTVEG 56
           VPEKWGKEELLKDWIDYS FDRIL A RI    RASLVA        QF    +G
Sbjct: 63  VPEKWGKEELLKDWIDYSAFDRILAAGRIA-SARASLVAEGRRVESRQFVAAAQG 116

[Close]
BLAST of Csor.00g222170 vs. NCBI nr
Match: KGN46948.1 (hypothetical protein Csa_020684 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.59e-11
Identity = 32/40 (80.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 1   MVPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVA 40
           MVPEKWGKEELLKDWIDYS FDRIL A RI    RASL A
Sbjct: 68  MVPEKWGKEELLKDWIDYSAFDRILAAGRIA-SARASLAA 106

[Close]
BLAST of Csor.00g222170 vs. NCBI nr
Match: XP_022153004.1 (protein BIC2 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.23e-10
Identity = 31/39 (79.49%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 2  VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVA 40
          VPEKWGKEELLKDWIDYS FDRIL A RI    RASL A
Sbjct: 51 VPEKWGKEELLKDWIDYSAFDRILAAKRIATA-RASLAA 88

[Close]
BLAST of Csor.00g222170 vs. ExPASy TrEMBL
Match: A0A0A0KBS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.22e-11
Identity = 32/40 (80.00%), Postives = 32/40 (80.00%), Query Frame = 0 

Query: 1   MVPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVA 40
           MVPEKWGKEELLKDWIDYS FDRIL A RI    RASL A
Sbjct: 68  MVPEKWGKEELLKDWIDYSAFDRILAAGRIA-SARASLAA 106

[Close]
BLAST of Csor.00g222170 vs. ExPASy TrEMBL
Match: A0A6J1DHR5 (protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.97e-11
Identity = 31/39 (79.49%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 2  VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVA 40
          VPEKWGKEELLKDWIDYS FDRIL A RI    RASL A
Sbjct: 51 VPEKWGKEELLKDWIDYSAFDRILAAKRIATA-RASLAA 88

[Close]
BLAST of Csor.00g222170 vs. ExPASy TrEMBL
Match: A0A5D3D5X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold28061G00010 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.12e-10
Identity = 31/39 (79.49%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVA 40
           VPEKWGKEELLKDWIDYS FDRIL A RI    RASL A
Sbjct: 66  VPEKWGKEELLKDWIDYSAFDRILAAGRIA-SARASLAA 103

[Close]
BLAST of Csor.00g222170 vs. ExPASy TrEMBL
Match: A0A5A7STT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00580 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.16e-10
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVA 40
           VP+KWGKEELLKDWIDYS FDRIL A RI    RASL A
Sbjct: 66  VPDKWGKEELLKDWIDYSAFDRILAAGRIA-SARASLAA 103

[Close]
BLAST of Csor.00g222170 vs. ExPASy TrEMBL
Match: A0A1S3C9F3 (uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.16e-10
Identity = 30/39 (76.92%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVA 40
           VP+KWGKEELLKDWIDYS FDRIL A RI    RASL A
Sbjct: 66  VPDKWGKEELLKDWIDYSAFDRILAAGRIA-SARASLAA 103

[Close]
BLAST of Csor.00g222170 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 20/43 (46.51%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 2  VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRASLVAGAAE 45
          +P+ WGKE LL  W+D+STFD   T+ +I V  RA+L+A + +
Sbjct: 57 IPDSWGKEGLLMGWMDFSTFDAAFTSSQI-VSARAALMADSGD 98

[Close]
BLAST of Csor.00g222170 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 20/35 (57.14%), Postives = 23/35 (65.71%), Query Frame = 0 

Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIGVGKRA 37
           +PE WG+EELLKDWID STFD  L    I   + A
Sbjct: 83  IPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTA 117

The following BLAST results are available for this feature:
BLAST of Csor.00g222170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M2801.3e-0446.51Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1[more]
Q9LXJ12.3e-0457.14Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1[more]
BLAST of Csor.00g222170 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6605990.11.85e-60100.00hypothetical protein SDJN03_03307, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7035940.11.77e-3878.4960S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG7010351.12.81e-1163.6460S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KGN46948.14.59e-1180.00hypothetical protein Csa_020684 [Cucumis sativus][more]
XP_022153004.11.23e-1079.49protein BIC2 [Momordica charantia][more]
BLAST of Csor.00g222170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBS72.22e-1180.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1[more]
A0A6J1DHR55.97e-1179.49protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1[more]
A0A5D3D5X11.12e-1079.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7STT73.16e-1076.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3C9F33.16e-1076.92uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=... [more]
BLAST of Csor.00g222170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G44450.19.4e-0646.51unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G52740.11.6e-0557.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g222170.m01Csor.00g222170.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009785 blue light signaling pathway
biological_process GO:0009624 response to nematode
cellular_component GO:0010008 endosome membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane