Csor.00g222120 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g222120
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S acidic ribosomal protein family
Location	Csor_Chr02: 8169740 .. 8170901 (+)
RNA-Seq Expression	Csor.00g222120
Synteny	Csor.00g222120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAATACAATTATAATTTCATTTTGGTTTCATTTTCACTTTAATTAATTAAAATAAAGCTAAGATGACGTTTTTTTAATTAAAAAAATATAATTTTTTCAATTTTTTTATTCATAAAAATAACAATTTTTTTCTTTTTTTTCTTTCTCATAATTAAATTACGATGTGAATTTACAGCCCGTACCCTTGAACTACAATAACGTATAACGGCCGAAAACGGCAAAACAGCGTAAAGGCCCATAAACCATTTTAGGCCCACGAAAAAGGCCCGAAAAAGAAAAACCCTAATTGTATAAAGAGTCGCGTCCCCGTAGTTCGCGTTCCATTCTGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAGTACGCATTCTTGTACCATTTTTTTTAGCTGATTTATTTTCTTTAAGTTCTTCTCGTTTATGGTGTCTGATATTTTATGTTGTTGAAGCAGAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGGTTCTTCTTTTACAATCTTTCTTTTAGTTAAAAGTTTAAGTTATTATACTGGTGTTGTTGCTGTTTAAGATTTATTAGTATTTTATGGTTTGGGAATGGTTAGTTTTCGTTCAATCCAAAAGATTAGGGTAGGCTGGAAATGAAGTGAAATCTTCAATTGACTGACCTGAAACGATTAGTGCTCTTAGTGAATTTGTGTTGAGATTCCTAGCGGGGTTTTGTTTACAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGTAAGTTCTTAACCGGTTATTCTAAGGGTTACACATTTTCTTTTCTACATGGTATAATTGCTTGGTCTATATATATAATGACACCTAAATTTTATGTTCGTATGTTCTTCTATCTTTTTGCAGGACATGGGCTTCAGCCTCTTTGATTAA

mRNA sequence

ATGGGAAAATACAATTATAATTTCATTTTGTTCGCGTTCCATTCTGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGCTTCAGCCTCTTTGATTAA

Coding sequence (CDS)

ATGGGAAAATACAATTATAATTTCATTTTGTTCGCGTTCCATTCTGTCTTCGTCTTGGTTGCAGCTTCTGTTTCGATCTTCTCAAAGATGAAGGTGGTTGCTGCATATCTGTTGGCCGTACTCGGTGGCAACACCAGTCCCGGACTTGATGATGTGAAGGATATTCTTAATTCAGTCGGGGCTGAGGTCGATGTGGACAGGATTAACTCGCTATTAACCCAAGTGAAAGGAAAAGATATCACCGAGTTGATAGCTTCCGGACGGGAGAAATTGGCGTCAGTGCCGTCTGGTGGCGGGGCAGTCGCCGTCGCCGCCCCTGCCGGTGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCCGACGATGACATGGGCTTCAGCCTCTTTGATTAA

Protein sequence

MGKYNYNFILFAFHSVFVLVAASVSIFSKMKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD

Homology

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BLAST of Csor.00g222120 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-34
Identity = 84/114 (73.68%), Postives = 97/114 (85.09%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE D +++  LLT++K KDITE+IA+GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           +L+SVPSGGGA+ + APA   AGGGAAPA   KKEEKVEEKEESD+DMGFSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPA-AVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLFD 113

[Close]

BLAST of Csor.00g222120 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-32
Identity = 84/114 (73.68%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MK VAAYLLAVL GN SP  DD+  IL SVG EVD +++  LL+Q+ GKDITELIA+GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           K ASVP GGG VAVAA A   A GGAAPAA  KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAA--PAAGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 112

[Close]

BLAST of Csor.00g222120 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-31
Identity = 81/115 (70.43%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAA+LLAVL G  SP   D+KDIL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 90  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPS GGG VAVA+   G  GGG APAA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g222120 vs. ExPASy Swiss-Prot
Match: Q9LXM8 (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-30
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Csor.00g222120 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-29
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 90  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g222120 vs. NCBI nr
Match: KAG6605995.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255 bits (651), Expect = 5.32e-85
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MGKYNYNFILFAFHSVFVLVAASVSIFSKMKVVAAYLLAVLGGNTSPGLDDVKDILNSVG 60
           MGKYNYNFILFAFHSVFVLVAASVSIFSKMKVVAAYLLAVLGGNTSPGLDDVKDILNSVG
Sbjct: 1   MGKYNYNFILFAFHSVFVLVAASVSIFSKMKVVAAYLLAVLGGNTSPGLDDVKDILNSVG 60

Query: 61  AEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAA 120
           AEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAA
Sbjct: 61  AEVDVDRINSLLTQVKGKDITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAA 120

Query: 121 EKKEEKVEEKEESDDDMGFSLFD 143
           EKKEEKVEEKEESDDDMGFSLFD
Sbjct: 121 EKKEEKVEEKEESDDDMGFSLFD 143

[Close]

BLAST of Csor.00g222120 vs. NCBI nr
Match: XP_022957717.1 (60S acidic ribosomal protein P2B-like [Cucurbita moschata] >KAG7035945.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203 bits (517), Expect = 5.47e-65
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Csor.00g222120 vs. NCBI nr
Match: XP_023532554.1 (60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197 bits (501), Expect = 1.50e-62
Identity = 111/114 (97.37%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVD INSLLTQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDSINSLLTQVKGKDITELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAVAVAAPAG A GGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGAAGGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Csor.00g222120 vs. NCBI nr
Match: KAG6570492.1 (60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (505), Expect = 3.57e-62
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 19  LVAASVSIFSKMKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGK 78
           L AASV+ FSKMKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGK
Sbjct: 59  LFAASVTSFSKMKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGK 118

Query: 79  DITELIASGREKLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDM 138
           DITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAAAE KKEEKVEEKEESDDDM
Sbjct: 119 DITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDM 178

Query: 139 GFSLFD 143
           GFSLFD
Sbjct: 179 GFSLFD 184

[Close]

BLAST of Csor.00g222120 vs. NCBI nr
Match: XP_022996218.1 (60S acidic ribosomal protein P2B-like [Cucurbita maxima])

HSP 1 Score: 191 bits (485), Expect = 4.11e-60
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD +RINSLLTQVKGKDITELI SGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDENRINSLLTQVKGKDITELITSGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAVAVAA AGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAATAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Csor.00g222120 vs. ExPASy TrEMBL
Match: A0A6J1GZW9 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111459175 PE=3 SV=1)

HSP 1 Score: 203 bits (517), Expect = 2.65e-65
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Csor.00g222120 vs. ExPASy TrEMBL
Match: A0A6J1KA82 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111491509 PE=3 SV=1)

HSP 1 Score: 191 bits (485), Expect = 1.99e-60
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD +RINSLLTQVKGKDITELI SGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKYILNSVGAEVDENRINSLLTQVKGKDITELITSGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAVAVAA AGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVAVAATAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 114

[Close]

BLAST of Csor.00g222120 vs. ExPASy TrEMBL
Match: A0A6J1J9Z4 (60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC111483902 PE=3 SV=1)

HSP 1 Score: 186 bits (472), Expect = 1.97e-58
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAV +AAPAGGAAGGGAAPAA E KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGAAGGGAAPAAVEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g222120 vs. ExPASy TrEMBL
Match: A0A6J1FYH3 (60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448674 PE=3 SV=1)

HSP 1 Score: 186 bits (472), Expect = 1.97e-58
Identity = 107/115 (93.04%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAV +AAPAGG AGGGAAPAAAE KKEEKVEEKEESDDDMGFSLFD
Sbjct: 61  KLASVPSGGGAVGIAAPAGGVAGGGAAPAAAEQKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of Csor.00g222120 vs. ExPASy TrEMBL
Match: A0A6J1DJB9 (60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC111020580 PE=3 SV=1)

HSP 1 Score: 185 bits (469), Expect = 5.63e-58
Identity = 106/115 (92.17%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVLGGNTSPG DDVK+ILNSVG EVD DRI SLL+QVKGKDITELIASGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPGADDVKNILNSVGVEVDEDRIESLLSQVKGKDITELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE-KKEEKVEEKEESDDDMGFSLFD 143
           KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAE KKEEKVEEKE+SDDD+GFSLFD
Sbjct: 61  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEEKKEEKVEEKEDSDDDLGFSLFD 115

[Close]

BLAST of Csor.00g222120 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-32
Identity = 81/115 (70.43%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAA+LLAVL G  SP   D+KDIL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 90  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPS GGG VAVA+   G  GGG APAA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g222120 vs. TAIR 10
Match: AT3G44590.2 (60S acidic ribosomal protein family )

HSP 1 Score: 134.0 bits (336), Expect = 9.3e-32
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Csor.00g222120 vs. TAIR 10
Match: AT3G44590.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.0 bits (336), Expect = 9.3e-32
Identity = 78/114 (68.42%), Postives = 90/114 (78.95%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKV AA+LLAVLGGN +P  D++KDI+ +VGA+VD + I  LL +V GKDI ELIASGRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 90  KLASVPSGGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPSGGG    AAP   ++GGG A A AEKKE K EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGVAVSAAP---SSGGGGAAAPAEKKEAKKEEKEESDDDMGFSLFE 111

[Close]

BLAST of Csor.00g222120 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 131.0 bits (328), Expect = 7.9e-31
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 90  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of Csor.00g222120 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 131.0 bits (328), Expect = 7.9e-31
Identity = 80/115 (69.57%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 30  MKVVAAYLLAVLGGNTSPGLDDVKDILNSVGAEVDVDRINSLLTQVKGKDITELIASGRE 89
           MKVVAAYLLAVL G  SP   D+K IL SVGAE +  +I  LL +VKGKD+ ELIA+GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 90  KLASVPS-GGGAVAVAAPAGGAAGGGAAPAAAEKKEEKVEEKEESDDDMGFSLFD 144
           KLASVPS GGG VAVA+   G  GGG A AA  KKEEK EEKEESDDDMGFSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

The following BLAST results are available for this feature:

BLAST of Csor.00g222120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24415	1.1e-34	73.68	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
P46252	2.4e-32	73.68	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
P51407	3.4e-31	70.43	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
Q9LXM8	1.3e-30	68.42	60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana OX=3702 GN=RPP2D PE=3 ...	[more]
Q9SLF7	1.1e-29	69.57	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]

BLAST of Csor.00g222120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605995.1	5.32e-85	100.00	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022957717.1	5.47e-65	100.00	60S acidic ribosomal protein P2B-like [Cucurbita moschata] >KAG7035945.1 60S aci...	[more]
XP_023532554.1	1.50e-62	97.37	60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570492.1	3.57e-62	92.06	60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022996218.1	4.11e-60	95.61	60S acidic ribosomal protein P2B-like [Cucurbita maxima]	[more]

BLAST of Csor.00g222120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZW9	2.65e-65	100.00	60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111459...	[more]
A0A6J1KA82	1.99e-60	95.61	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11149150...	[more]
A0A6J1J9Z4	1.97e-58	93.04	60S acidic ribosomal protein P2B-like OS=Cucurbita maxima OX=3661 GN=LOC11148390...	[more]
A0A6J1FYH3	1.97e-58	93.04	60S acidic ribosomal protein P2B-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A6J1DJB9	5.63e-58	92.17	60S acidic ribosomal protein P2B-like OS=Momordica charantia OX=3673 GN=LOC11102...	[more]

BLAST of Csor.00g222120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27720.1	2.4e-32	70.43	60S acidic ribosomal protein family	[more]
AT3G44590.2	9.3e-32	68.42	60S acidic ribosomal protein family	[more]
AT3G44590.1	9.3e-32	68.42	60S acidic ribosomal protein family	[more]
AT2G27710.1	7.9e-31	69.57	60S acidic ribosomal protein family	[more]
AT2G27710.2	7.9e-31	69.57	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 47..142 e-value: 4.0E-25 score: 88.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..143
None	No IPR available	PANTHER	PTHR21141:SF83	60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE	coord: 18..143
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 29..88 e-value: 5.1E-25 score: 89.4
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 18..143
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 30..143 e-value: 1.32354E-34 score: 114.668
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 31..143 score: 16.461323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g222120.m01	Csor.00g222120.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome