Csor.00g221750 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g221750
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
Location	Csor_Chr02: 8363818 .. 8364267 (-)
RNA-Seq Expression	Csor.00g221750
Synteny	Csor.00g221750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAGGCTTCCATTATAGGTGATGCAGTTCTGTACGTGAAACAGCTCCAAATGCAGGGAAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAGTCCTCAATCAACGAAACCCGGAAGATCATTCAAGCTTCACGTTCATACCAATACCTTCCCACCAAGATAATTCAGGTACATTTTCAACTTGGGAAGCAAATTTCATGGCCGAAGCTGCTAATCTAATCTAACCTGCAATTGGGGGATTTCTTCCCTTTCAGCTGGATGTGTTCCAAGTGGAGGAAACAGGGTTTTATTTGAGGCTGATTTGAATTCAAATGCTTTCAAACCAGAATGGAGTTATCAATCATTATGATGGTTTTGCAGGTGAGGGACTGTGATGTGGACATGAATTTGCCAAGTCTGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA

mRNA sequence

ATGGATAAGGCTTCCATTATAGGTGATGCAGTTCTGTACGTGAAACAGCTCCAAATGCAGGGAAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAGTCCTCAATCAACGAAACCCGGAAGATCATTCAAGCTTCACGTTCATACCAATACCTTCCCACCAAGATAATTCAGGTGAGGGACTGTGATGTGGACATGAATTTGCCAAGTCTGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA

Coding sequence (CDS)

ATGGATAAGGCTTCCATTATAGGTGATGCAGTTCTGTACGTGAAACAGCTCCAAATGCAGGGAAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAGTCCTCAATCAACGAAACCCGGAAGATCATTCAAGCTTCACGTTCATACCAATACCTTCCCACCAAGATAATTCAGGTGAGGGACTGTGATGTGGACATGAATTTGCCAAGTCTGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA

Protein sequence

MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF

Homology

[Close]

BLAST of Csor.00g221750 vs. ExPASy Swiss-Prot
Match: Q0V7X4 (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana OX=3702 GN=FIT PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------------------- 60
           MDKASI+GDAVLYV++LQ Q KKLK++I+ LE+S+N T                      
Sbjct: 160 MDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQEHAPDAQKTQPFRGINPP 219

Query: 61  --RKIIQ--------------------------------ASRSYQ-------------YL 86
             +KIIQ                                +  S+Q             YL
Sbjct: 220 ASKKIIQMDVIQVEEKGFYVRLVCNKGEGVAPSLYKSLESLTSFQVQNSNLSSPSPDTYL 279

[Close]

BLAST of Csor.00g221750 vs. NCBI nr
Match: KAG6606032.1 (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171 bits (432), Expect = 1.92e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRD 60
          MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRD
Sbjct: 1  MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRD 60

Query: 61 CDVDMNLPSLKLWLTGALLNHGFEF 85
          CDVDMNLPSLKLWLTGALLNHGFEF
Sbjct: 61 CDVDMNLPSLKLWLTGALLNHGFEF 85

[Close]

BLAST of Csor.00g221750 vs. NCBI nr
Match: XP_016903385.1 (PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X2 [Cucumis melo])

HSP 1 Score: 145 bits (367), Expect = 2.12e-41
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------RKIIQASRSYQYL 60
           MDKASI+GDAVLYVK+LQMQ KKLKAEISVLESSINET         +KIIQ S S Q+L
Sbjct: 158 MDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQKIHRDQTKKKIIQTSYSDQFL 217

Query: 61  PTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF 85
           PTKIIQVRDC+VDMNLP+LKLWLTGALLNHGFEF
Sbjct: 218 PTKIIQVRDCEVDMNLPNLKLWLTGALLNHGFEF 251

[Close]

BLAST of Csor.00g221750 vs. NCBI nr
Match: KAG7035980.1 (hypothetical protein SDJN02_02780, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137 bits (346), Expect = 1.52e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 19 MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGAL 78
          MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGAL
Sbjct: 1  MQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGAL 60

Query: 79 LNHGFEF 85
          LNHGFEF
Sbjct: 61 LNHGFEF 67

[Close]

BLAST of Csor.00g221750 vs. NCBI nr
Match: XP_008465418.1 (PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 [Cucumis melo] >KAA0037305.1 transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 1.78e-30
Identity = 75/152 (49.34%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------RKIIQASRSYQYL 60
           MDKASI+GDAVLYVK+LQMQ KKLKAEISVLESSINET         +KIIQ S S Q+L
Sbjct: 158 MDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQKIHRDQTKKKIIQTSYSDQFL 217

Query: 61  PTKIIQ------------------------------------------------------ 85
           PTKIIQ                                                      
Sbjct: 218 PTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTNFIIQSSNLASASDRFILT 277

[Close]

BLAST of Csor.00g221750 vs. NCBI nr
Match: XP_004145819.1 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Cucumis sativus] >KAE8646895.1 hypothetical protein Csa_020756 [Cucumis sativus])

HSP 1 Score: 118 bits (295), Expect = 4.78e-30
Identity = 74/152 (48.68%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------RKIIQASRSYQYL 60
           MDKASI+GDAVLYVK+LQMQ KKLK+EISVLESSINET         +KIIQ S S Q+L
Sbjct: 156 MDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINETQKVHRDQTKKKIIQTSYSDQFL 215

Query: 61  PTKIIQ------------------------------------------------------ 85
           PTKIIQ                                                      
Sbjct: 216 PTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFIIQSSNLTSASDRFILT 275

[Close]

BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A1S4E5Y5 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503037 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 1.03e-41
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------RKIIQASRSYQYL 60
           MDKASI+GDAVLYVK+LQMQ KKLKAEISVLESSINET         +KIIQ S S Q+L
Sbjct: 158 MDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQKIHRDQTKKKIIQTSYSDQFL 217

Query: 61  PTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF 85
           PTKIIQVRDC+VDMNLP+LKLWLTGALLNHGFEF
Sbjct: 218 PTKIIQVRDCEVDMNLPNLKLWLTGALLNHGFEF 251

[Close]

BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A5A7T764 (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3G00170 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 8.64e-31
Identity = 75/152 (49.34%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------RKIIQASRSYQYL 60
           MDKASI+GDAVLYVK+LQMQ KKLKAEISVLESSINET         +KIIQ S S Q+L
Sbjct: 158 MDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQKIHRDQTKKKIIQTSYSDQFL 217

Query: 61  PTKIIQ------------------------------------------------------ 85
           PTKIIQ                                                      
Sbjct: 218 PTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTNFIIQSSNLASASDRFILT 277

[Close]

BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A1S3CQB6 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503037 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 8.64e-31
Identity = 75/152 (49.34%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------RKIIQASRSYQYL 60
           MDKASI+GDAVLYVK+LQMQ KKLKAEISVLESSINET         +KIIQ S S Q+L
Sbjct: 158 MDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQKIHRDQTKKKIIQTSYSDQFL 217

Query: 61  PTKIIQ------------------------------------------------------ 85
           PTKIIQ                                                      
Sbjct: 218 PTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTNFIIQSSNLASASDRFILT 277

[Close]

BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A0A0KDF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148260 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.67e-29
Identity = 72/151 (47.68%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------RKIIQASRSYQYL 60
           MDKASI+GDAVLYVK+LQMQ KKLK+EISVLESSINET         +KIIQ S S Q+L
Sbjct: 1   MDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINETQKVHRDQTKKKIIQTSYSDQFL 60

Query: 61  PTKIIQ------------------------------------------------------ 84
           PTKIIQ                                                      
Sbjct: 61  PTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFIIQSSNLTSASDRFILT 120

[Close]

BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A6J1CGE1 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Momordica charantia OX=3673 GN=LOC111011295 PE=4 SV=1)

HSP 1 Score: 112 bits (281), Expect = 1.93e-28
Identity = 71/153 (46.41%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINE----------TRKIIQASRSYQY 60
           MDKASI+GDAVLYVK+LQMQ KKLKAEISVLESSINE          + + IQ SRS Q+
Sbjct: 137 MDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINEIQTHHRPTDQSHRKIQTSRSDQF 196

Query: 61  LPTKIIQ----------------------------------------------------- 85
           LP KIIQ                                                     
Sbjct: 197 LPNKIIQLDVFQVEERGFYLRMVCKMGEGVAMSLYKVLESLTSFNIQSSNLASASDRFIL 256

[Close]

BLAST of Csor.00g221750 vs. TAIR 10
Match: AT2G28160.1 (FER-like regulator of iron uptake )

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINET---------------------- 60
           MDKASI+GDAVLYV++LQ Q KKLK++I+ LE+S+N T                      
Sbjct: 160 MDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQEHAPDAQKTQPFRGINPP 219

Query: 61  --RKIIQ--------------------------------ASRSYQ-------------YL 86
             +KIIQ                                +  S+Q             YL
Sbjct: 220 ASKKIIQMDVIQVEEKGFYVRLVCNKGEGVAPSLYKSLESLTSFQVQNSNLSSPSPDTYL 279

[Close]

BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESS 35
           MDKASII DA+ Y++ LQ + KKL+AEI  LES+
Sbjct: 83  MDKASIIKDAISYIEGLQYEEKKLEAEIRELEST 116

[Close]

BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESS 35
           MDKASII DA+ Y++ LQ + KKL+AEI  LES+
Sbjct: 84  MDKASIIKDAISYIEGLQYEEKKLEAEIRELEST 117

[Close]

BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESS 35
           MDKASII DA+ Y++ LQ + KKL+AEI  LES+
Sbjct: 84  MDKASIIKDAISYIEGLQYEEKKLEAEIRELEST 117

[Close]

BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.4 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESS 35
           MDKASII DA+ Y++ LQ + KKL+AEI  LES+
Sbjct: 84  MDKASIIKDAISYIEGLQYEEKKLEAEIRELEST 117

The following BLAST results are available for this feature:

BLAST of Csor.00g221750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0V7X4	2.6e-10	33.12	Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Ar...	[more]

BLAST of Csor.00g221750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606032.1	1.92e-53	100.00	Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR, part...	[more]
XP_016903385.1	2.12e-41	79.79	PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION F...	[more]
KAG7035980.1	1.52e-40	100.00	hypothetical protein SDJN02_02780, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008465418.1	1.78e-30	49.34	PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION F...	[more]
XP_004145819.1	4.78e-30	48.68	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Cucu...	[more]

BLAST of Csor.00g221750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E5Y5	1.03e-41	79.79	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isofo...	[more]
A0A5A7T764	8.64e-31	49.34	Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isofo...	[more]
A0A1S3CQB6	8.64e-31	49.34	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isofo...	[more]
A0A0A0KDF4	2.67e-29	47.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148260 PE=4 SV=1	[more]
A0A6J1CGE1	1.93e-28	46.41	transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Mo...	[more]

BLAST of Csor.00g221750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28160.1	1.8e-11	33.12	FER-like regulator of iron uptake	[more]
AT5G57150.1	6.4e-04	61.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G57150.3	6.4e-04	61.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G57150.2	6.4e-04	61.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G57150.4	6.4e-04	61.76	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 14..34
None	No IPR available	PANTHER	PTHR31945:SF17	TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR	coord: 1..43
None	No IPR available	PANTHER	PTHR31945	TRANSCRIPTION FACTOR SCREAM2-RELATED	coord: 1..43
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 1..44 e-value: 1.5E-5 score: 27.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g221750.m01	Csor.00g221750.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034756	regulation of iron ion transport
biological_process	GO:0010039	response to iron ion
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity