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Csor.00g221750 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAAGGCTTCCATTATAGGTGATGCAGTTCTGTACGTGAAACAGCTCCAAATGCAGGGAAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAGTCCTCAATCAACGAAACCCGGAAGATCATTCAAGCTTCACGTTCATACCAATACCTTCCCACCAAGATAATTCAGGTACATTTTCAACTTGGGAAGCAAATTTCATGGCCGAAGCTGCTAATCTAATCTAACCTGCAATTGGGGGATTTCTTCCCTTTCAGCTGGATGTGTTCCAAGTGGAGGAAACAGGGTTTTATTTGAGGCTGATTTGAATTCAAATGCTTTCAAACCAGAATGGAGTTATCAATCATTATGATGGTTTTGCAGGTGAGGGACTGTGATGTGGACATGAATTTGCCAAGTCTGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA ATGGATAAGGCTTCCATTATAGGTGATGCAGTTCTGTACGTGAAACAGCTCCAAATGCAGGGAAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAGTCCTCAATCAACGAAACCCGGAAGATCATTCAAGCTTCACGTTCATACCAATACCTTCCCACCAAGATAATTCAGGTGAGGGACTGTGATGTGGACATGAATTTGCCAAGTCTGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA ATGGATAAGGCTTCCATTATAGGTGATGCAGTTCTGTACGTGAAACAGCTCCAAATGCAGGGAAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAGTCCTCAATCAACGAAACCCGGAAGATCATTCAAGCTTCACGTTCATACCAATACCTTCCCACCAAGATAATTCAGGTGAGGGACTGTGATGTGGACATGAATTTGCCAAGTCTGAAGCTTTGGCTTACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA MDKASIIGDAVLYVKQLQMQGKKLKAEISVLESSINETRKIIQASRSYQYLPTKIIQVRDCDVDMNLPSLKLWLTGALLNHGFEF Homology
BLAST of Csor.00g221750 vs. ExPASy Swiss-Prot
Match: Q0V7X4 (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Arabidopsis thaliana OX=3702 GN=FIT PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10 Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 0
BLAST of Csor.00g221750 vs. NCBI nr
Match: KAG6606032.1 (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 171 bits (432), Expect = 1.92e-53 Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0
BLAST of Csor.00g221750 vs. NCBI nr
Match: XP_016903385.1 (PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X2 [Cucumis melo]) HSP 1 Score: 145 bits (367), Expect = 2.12e-41 Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of Csor.00g221750 vs. NCBI nr
Match: KAG7035980.1 (hypothetical protein SDJN02_02780, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 137 bits (346), Expect = 1.52e-40 Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0
BLAST of Csor.00g221750 vs. NCBI nr
Match: XP_008465418.1 (PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 [Cucumis melo] >KAA0037305.1 transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 119 bits (298), Expect = 1.78e-30 Identity = 75/152 (49.34%), Postives = 81/152 (53.29%), Query Frame = 0
BLAST of Csor.00g221750 vs. NCBI nr
Match: XP_004145819.1 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Cucumis sativus] >KAE8646895.1 hypothetical protein Csa_020756 [Cucumis sativus]) HSP 1 Score: 118 bits (295), Expect = 4.78e-30 Identity = 74/152 (48.68%), Postives = 81/152 (53.29%), Query Frame = 0
BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A1S4E5Y5 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503037 PE=4 SV=1) HSP 1 Score: 145 bits (367), Expect = 1.03e-41 Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0
BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A5A7T764 (Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3G00170 PE=4 SV=1) HSP 1 Score: 119 bits (298), Expect = 8.64e-31 Identity = 75/152 (49.34%), Postives = 81/152 (53.29%), Query Frame = 0
BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A1S3CQB6 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503037 PE=4 SV=1) HSP 1 Score: 119 bits (298), Expect = 8.64e-31 Identity = 75/152 (49.34%), Postives = 81/152 (53.29%), Query Frame = 0
BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A0A0KDF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148260 PE=4 SV=1) HSP 1 Score: 114 bits (286), Expect = 2.67e-29 Identity = 72/151 (47.68%), Postives = 80/151 (52.98%), Query Frame = 0
BLAST of Csor.00g221750 vs. ExPASy TrEMBL
Match: A0A6J1CGE1 (transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR OS=Momordica charantia OX=3673 GN=LOC111011295 PE=4 SV=1) HSP 1 Score: 112 bits (281), Expect = 1.93e-28 Identity = 71/153 (46.41%), Postives = 79/153 (51.63%), Query Frame = 0
BLAST of Csor.00g221750 vs. TAIR 10
Match: AT2G28160.1 (FER-like regulator of iron uptake ) HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11 Identity = 51/154 (33.12%), Postives = 68/154 (44.16%), Query Frame = 0
BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04 Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0
BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04 Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0
BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04 Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0
BLAST of Csor.00g221750 vs. TAIR 10
Match: AT5G57150.4 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 40.8 bits (94), Expect = 6.4e-04 Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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