Csor.00g221080 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g221080
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	YqgFc domain-containing protein
Location	Csor_Chr02: 8719275 .. 8721042 (+)
RNA-Seq Expression	Csor.00g221080
Synteny	Csor.00g221080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTTCAAGGGTTTTCCAAAGGTATGGTCCTGACCAGATCAAATTGGAATTTCTTCCGAAAATTAATTGCATCGAGGTTCCGAATTCGGGCTTAATTCACTGTGCTTCATCTTCAACTTTGCAGGTAATAGTTGGAATCTATGAATTCTATTGAGTTTTCAAGTTACAATGGATTGCGAATGAATTTGAATGTGCTGAGTTAATTGCTGCACTAATTGTACGTTTTGGGCTTCGAAGGCGCGAAGCTGCAAATGATTTGTGCGAATCAGCTGCTGGATAACATGGTTCACTGAGCTAGATAGTAGTACGAGATGAAGTACGTGAGGCCGTTGAATTTGTTTCGCGATTTGTTAAAGGGAAATGCCCTTGAACGTGGCCGTTTCTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGGTATTTTGTTTCTCTGTTCATAGTATTGTGTCTGAGAGATTTGTAGTAATGGGATTTAAGTTGAAGTTCAAATAACGTGACCAGTATTAGTTGTTCTTCGGTTCTGCAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGGTGAGATATTTTACTCTGTTTTGTTATGAATATTTGTTAAATGTTATTTGATGCAATGATAAATGATAAGCAATGATTGAAGGGTGGTGCCACAAAATTCTGTAGGGAGGACTTTAATTTACTCGATCTTCAGTGAGTACCTTCTAATGTCCAAATGGGATTTCTTATGACGCCACTATGAATTTAGGTAGATAGCTCTAGGTTTAAAATGTAATACATTAGCTCTAACTTCACCATTTTTTCCCCTCTTCTTCCGTGATGTGTTGCTGTGCAGCATAGTTACTTTTAATCTTTGATTATCTGATGTTGAATTGCCAATGCTATTCTTTCTCGAAACCTTCAGTCATTTCCATGATGTGTATATTTACACCTGCTTCTGGTTTGTGTTTGCAGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGTGTGTTCTTTATCTCTTGAAATTCATCATTATTCACTCTCATCTCTACTTGACATTACATTATTCTGTATACAGGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGGTTGTCAATGTTATTAGTGTGGGCAGCCCTTCCTGTTAGTCTTGTGACTTATGTGACATGCCTTTCAATGTCTCTGTCAATTCAATGACTCGTTCATACAATTGTGATTATGTTTGAATTGTCTATCTCACCTTTTTGAATCGTGGTATTGACTTGTGAATAGGCTGCTGCATTGCATTGCATTGCATTGCATTTCATTCAACATTGAATATTGAATTTGTGATTTTGATCTATGTACACAGAATGTGGAACTTCTGATAAAACCATTGAAACTGCCTCCCATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGTAATTTACAATTTTGTTTTCCTCTTTAGTTTTAGCTTTCTATTATCTTGCCAAGGTTGGTAGAATTGCATCTAAAACAGCAATTAAAACTTCAGTTCATTAACAATAGAGTGGTATATCTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAG

mRNA sequence

ATGAAATTTCAAGGGTTTTCCAAAGGTTCCGAATTCGGGCTTAATTCACTGTGCTTCATCTTCAACTTTGCAGGCGCGAAGCTGCAAATGATTTGTGCGAATCAGCTGCTGGATAACATGGGAAATGCCCTTGAACGTGGCCGTTTCTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAACCATTGAAACTGCCTCCCATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAG

Coding sequence (CDS)

ATGAAATTTCAAGGGTTTTCCAAAGGTTCCGAATTCGGGCTTAATTCACTGTGCTTCATCTTCAACTTTGCAGGCGCGAAGCTGCAAATGATTTGTGCGAATCAGCTGCTGGATAACATGGGAAATGCCCTTGAACGTGGCCGTTTCTTGGGTTTAGATGTTGGTGATAAGTATGTTGGTTTGGCCGTCTCTGATCCAGATAATAAAATCGCATCGCCTCTTAGTGTTTTGTTCAGGAAGAAAACCAATATGCATCTGATGGCTCTGGATTTTCAGAGATTGATCTCTGAACTTTCTCTGTCAGGGTTCATTGTTGGATACCCTTTCGATGGACAACGACGCAACGCCGATGCTGTGCAAGTGAAGATCTTCATCGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAATATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTTCTGATAAAACCATTGAAACTGCCTCCCATTTTGTCAAAGACAATAATTGACAAGTTTGCTGCGGTTGGAATACTTCAGGGTTACTTGGATCATTTTAACAGAAGACCAGAATTGGAAGAGAGGTAG

Protein sequence

MKFQGFSKGSEFGLNSLCFIFNFAGAKLQMICANQLLDNMGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER

Homology

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BLAST of Csor.00g221080 vs. ExPASy Swiss-Prot
Match: A4XKC6 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=Csac_1776 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.7e-13
Identity = 48/141 (34.04%), Postives = 78/141 (55.32%), Query Frame = 0


Query: 48  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 107
           R L LD+G + +G+A+SDP    A P  VL  +K +++   LD  ++ +E  +   ++GY
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVLDLQKEDLY-SCLD--KIFNEHQIEKIVIGY 61

Query: 108 PFDGQRRNADAVQVKI-FIDDLC-KTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILS 167
           P    + + D    K+  ID++C +  +   V    WDE F++K VE +++   +     
Sbjct: 62  PV--SKFHPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVSWQKR 121

Query: 168 KTIIDKFAAVGILQGYLDHFN 187
           K ++DK AAV ILQGYLD  N
Sbjct: 122 KKVVDKLAAVYILQGYLDFIN 137

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BLAST of Csor.00g221080 vs. ExPASy Swiss-Prot
Match: C4Z578 (Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=EUBELI_00774 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 48  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTN-MHLMALDFQRLISELSLSGFIVG 107
           R +GLDVG K VG+A+SDP    A P   + RK+ N +       +++ISE  ++  +VG
Sbjct: 2   RIIGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVG 61

Query: 108 YPFDGQRRNAD---AVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPI 167
           YP     +N D     + K   +      +  G+  T WDE  T+   + +++   +   
Sbjct: 62  YP-----KNMDDTIGERAKACEEFAAALERRTGLPVTLWDERLTTVEADEVLEECGMRRE 121

Query: 168 LSKTIIDKFAAVGILQGYLD 184
             KT+ID+ AAV IL+GY++
Sbjct: 122 NRKTVIDQLAAVFILRGYME 136

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BLAST of Csor.00g221080 vs. ExPASy Swiss-Prot
Match: B8I4S7 (Putative pre-16S rRNA nuclease OS=Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) OX=394503 GN=Ccel_2239 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-12
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 48  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 107
           R LG+D GD  +G+A+SDP    A  L ++ + K ++    L    +I+E S++  ++GY
Sbjct: 2   RILGIDYGDSRIGVAISDPMGWTAQGLEMI-KSKDSLKKAVLRLSEIINEYSVTDIVIGY 61

Query: 108 PFD-GQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSK 167
           P +    +     + + FI  +   G+   +K   WDE  T+ +    +  L +     K
Sbjct: 62  PINMNGTKGPRTERTEEFIKKISDLGQFNIIK---WDERLTTVSAHRTMNELGIKASKKK 121

Query: 168 TIIDKFAAVGILQGYLD 184
            I+D  +AV ILQGYLD
Sbjct: 122 GIVDTMSAVLILQGYLD 134

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BLAST of Csor.00g221080 vs. ExPASy Swiss-Prot
Match: B9MRK7 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=Athe_1211 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 0


Query: 48  RFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGY 107
           R L LD+G+  VG+A+SDP    A P+  +  +  ++     +  ++    ++   ++GY
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKDLF---EELDKIFQGYNIEKVVIGY 61

Query: 108 PFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKT 167
           P      +    ++K   +   K G    V+   WDE F++K VE +I   +L     K 
Sbjct: 62  PLSKLHPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDE-ELNWKRKKK 121

Query: 168 IIDKFAAVGILQGYLDHFN 187
           IIDK AAV ILQGYLD +N
Sbjct: 122 IIDKVAAVYILQGYLDFYN 136

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BLAST of Csor.00g221080 vs. ExPASy Swiss-Prot
Match: B6IN25 (Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=RC1_1518 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 47/155 (30.32%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 36  LLDNMGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLI 95
           L++   +    GR +GLD+G+K +GLAVSDP   +ASP+  + R K      A +  R +
Sbjct: 6   LMELKASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQD--AQELARAM 65

Query: 96  SELSLSGFIVGYPFDGQRRNADAVQ-VKIFIDDLCKTGKLEGV--KYTFWDECFTSKNVE 155
            +  +   +VG P +         Q V+ F   L +  +L G   +  FWDE  ++  VE
Sbjct: 66  RDRDVRALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDERLSTSAVE 125

Query: 156 LLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNR 188
            ++    +       ++DK AA  ILQG LD   +
Sbjct: 126 RMMIGWDMTRKRRDEVVDKMAAAYILQGALDRLRQ 158

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BLAST of Csor.00g221080 vs. NCBI nr
Match: KAG6606099.1 (hypothetical protein SDJN03_03416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392 bits (1008), Expect = 9.16e-138
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MKFQGFSKGSEFGLNSLCFIFNFAGAKLQMICANQLLDNMGNALERGRFLGLDVGDKYVG 60
           MKFQGFSKGSEFGLNSLCFIFNFAGAKLQMICANQLLDNMGNALERGRFLGLDVGDKYVG
Sbjct: 1   MKFQGFSKGSEFGLNSLCFIFNFAGAKLQMICANQLLDNMGNALERGRFLGLDVGDKYVG 60

Query: 61  LAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQ 120
           LAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQ
Sbjct: 61  LAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQ 120

Query: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180
           VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG
Sbjct: 121 VKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQG 180

Query: 181 YLDHFNRRPELEER 194
           YLDHFNRRPELEER
Sbjct: 181 YLDHFNRRPELEER 194

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BLAST of Csor.00g221080 vs. NCBI nr
Match: XP_022995255.1 (uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharacterized protein LOC111490857 [Cucurbita maxima])

HSP 1 Score: 312 bits (800), Expect = 1.95e-106
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75

Query: 101 SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 160
           SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL
Sbjct: 76  SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 135

Query: 161 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194
           PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER
Sbjct: 136 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 169

[Close]

BLAST of Csor.00g221080 vs. NCBI nr
Match: XP_022957830.1 (uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957832.1 uncharacterized protein LOC111459253 [Cucurbita moschata])

HSP 1 Score: 311 bits (797), Expect = 5.60e-106
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75

Query: 101 SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 160
           SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL
Sbjct: 76  SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 135

Query: 161 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194
           PPILSKTIIDKFAAVGILQGYLDHFNRRPEL+ER
Sbjct: 136 PPILSKTIIDKFAAVGILQGYLDHFNRRPELDER 169

[Close]

BLAST of Csor.00g221080 vs. NCBI nr
Match: XP_023533829.1 (uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310 bits (794), Expect = 1.60e-105
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75

Query: 101 SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 160
           SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL
Sbjct: 76  SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 135

Query: 161 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194
           PPILSKTIIDKFAAVGILQ YLDHFNRRPELEER
Sbjct: 136 PPILSKTIIDKFAAVGILQAYLDHFNRRPELEER 169

[Close]

BLAST of Csor.00g221080 vs. NCBI nr
Match: KAG7036046.1 (hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297 bits (760), Expect = 5.78e-100
Identity = 153/179 (85.47%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75

Query: 101 SGFIVGYPFDGQRRNAD-------------------------AVQVKIFIDDLCKTGKLE 160
           SGFIVGYPFDGQRRN D                         AVQVKIFIDDLCKTGKLE
Sbjct: 76  SGFIVGYPFDGQRRNVDVCSLSLEIHHYSLSSLLDITLFCIQAVQVKIFIDDLCKTGKLE 135

Query: 161 GVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194
           GVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER
Sbjct: 136 GVKYTFWDECFTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194

[Close]

BLAST of Csor.00g221080 vs. ExPASy TrEMBL
Match: A0A6J1K3L4 (uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857 PE=3 SV=1)

HSP 1 Score: 312 bits (800), Expect = 9.46e-107
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75

Query: 101 SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 160
           SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL
Sbjct: 76  SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 135

Query: 161 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194
           PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER
Sbjct: 136 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 169

[Close]

BLAST of Csor.00g221080 vs. ExPASy TrEMBL
Match: A0A6J1H0B7 (uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC111459253 PE=3 SV=1)

HSP 1 Score: 311 bits (797), Expect = 2.71e-106
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 41  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 100
           GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL
Sbjct: 16  GNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSL 75

Query: 101 SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 160
           SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL
Sbjct: 76  SGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKL 135

Query: 161 PPILSKTIIDKFAAVGILQGYLDHFNRRPELEER 194
           PPILSKTIIDKFAAVGILQGYLDHFNRRPEL+ER
Sbjct: 136 PPILSKTIIDKFAAVGILQGYLDHFNRRPELDER 169

[Close]

BLAST of Csor.00g221080 vs. ExPASy TrEMBL
Match: A0A6J1E3H7 (uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026145 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 1.26e-92
Identity = 136/150 (90.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 42  NALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLS 101
           N LERGRFLGLDVGDKYVGLAVSDPDN IASPLSVL RKKT MHLMA D QRLISELSL+
Sbjct: 17  NPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMHLMARDLQRLISELSLA 76

Query: 102 GFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLP 161
           GFIVGYPFD QRRNADAVQVKIFIDDLCKTG LEGVKYTFWDECFTSKNVELLIKPL+LP
Sbjct: 77  GFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDECFTSKNVELLIKPLELP 136

Query: 162 PILSKTIIDKFAAVGILQGYLDHFNRRPEL 191
           P+LSKTI+DKFAAVGILQGYLD+ NRRPEL
Sbjct: 137 PVLSKTIVDKFAAVGILQGYLDYHNRRPEL 166

[Close]

BLAST of Csor.00g221080 vs. ExPASy TrEMBL
Match: A0A0A0KMK7 (YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 SV=1)

HSP 1 Score: 260 bits (665), Expect = 3.48e-86
Identity = 129/152 (84.87%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 42  NALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLS 101
           +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M LMA DFQ++ISE SL+
Sbjct: 17  DALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLA 76

Query: 102 GFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLP 161
           GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPL L 
Sbjct: 77  GFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLL 136

Query: 162 PILSKTIIDKFAAVGILQGYLDHFNRRPELEE 193
           P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 137 PAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 168

[Close]

BLAST of Csor.00g221080 vs. ExPASy TrEMBL
Match: A0A1S3ATQ4 (putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482742 PE=3 SV=1)

HSP 1 Score: 246 bits (629), Expect = 1.05e-80
Identity = 121/150 (80.67%), Postives = 132/150 (88.00%), Query Frame = 0


Query: 44  LERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDFQRLISELSLSGF 103
           L+  R LGLDVGDKYVGLAVSDPDNKIASPLSVL RKK  M LMA DFQ+LISE SL+GF
Sbjct: 19  LKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMDLMAEDFQKLISEFSLAGF 78

Query: 104 IVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLKLPPI 163
           IVGYPFD  R+N +A+QVKIFIDDLCKTGKLEGVKYTFWDE FTSKNVE +IKPL L P 
Sbjct: 79  IVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEGFTSKNVEQMIKPLNLLPA 138

Query: 164 LSKTIIDKFAAVGILQGYLDHFNRRPELEE 193
           +SKT++DKFAAVGILQGYLD+FNRRPEL E
Sbjct: 139 VSKTMLDKFAAVGILQGYLDYFNRRPELSE 168

[Close]

BLAST of Csor.00g221080 vs. TAIR 10
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.6e-47
Identity = 93/156 (59.62%), Postives = 114/156 (73.08%), Query Frame = 0


Query: 37  LDNMGNALER-----GRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMHLMALDF 96
           L  +GNAL+      GRFLGLDVGDKYVGLA+SDP N +ASPLSVL RKK+N+ LMA DF
Sbjct: 7   LSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNIDLMATDF 66

Query: 97  QRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNV 156
           Q L+   S+SG +VGYPF       D V V +FI++L KT KL+ VKYT+WDE  +SK V
Sbjct: 67  QNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDERLSSKTV 126

Query: 157 ELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNR 188
           EL++KPL L P+  KT++DK AAV ILQ YLD+ NR
Sbjct: 127 ELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANR 162

The following BLAST results are available for this feature:

BLAST of Csor.00g221080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4XKC6	5.7e-13	34.04	Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain A...	[more]
C4Z578	1.7e-12	32.14	Putative pre-16S rRNA nuclease OS=Lachnospira eligens (strain ATCC 27750 / DSM 3...	[more]
B8I4S7	3.7e-12	30.66	Putative pre-16S rRNA nuclease OS=Ruminiclostridium cellulolyticum (strain ATCC ...	[more]
B9MRK7	1.1e-11	32.37	Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1...	[more]
B6IN25	1.1e-11	30.32	Putative pre-16S rRNA nuclease OS=Rhodospirillum centenum (strain ATCC 51521 / S...	[more]

BLAST of Csor.00g221080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606099.1	9.16e-138	100.00	hypothetical protein SDJN03_03416, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022995255.1	1.95e-106	100.00	uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharac...	[more]
XP_022957830.1	5.60e-106	99.35	uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 unchar...	[more]
XP_023533829.1	1.60e-105	99.35	uncharacterized protein LOC111795559 [Cucurbita pepo subsp. pepo]	[more]
KAG7036046.1	5.78e-100	85.47	hypothetical protein SDJN02_02846 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Csor.00g221080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K3L4	9.46e-107	100.00	uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857...	[more]
A0A6J1H0B7	2.71e-106	99.35	uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC1114592...	[more]
A0A6J1E3H7	1.26e-92	90.67	uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]
A0A0A0KMK7	3.48e-86	84.87	YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 ...	[more]
A0A1S3ATQ4	1.05e-80	80.67	putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348274...	[more]

BLAST of Csor.00g221080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52905.1	1.6e-47	59.62	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 47..151 e-value: 2.1E-19 score: 80.5
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 47..190 e-value: 8.4E-28 score: 99.0
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 48..183 e-value: 1.9E-25 score: 89.9
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAM	TIGR00250	TIGR00250	coord: 50..183 e-value: 7.2E-12 score: 43.5
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 39..191
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 47..186 score: 16.703022
IPR005227	Putative pre-16S rRNA nuclease	CDD	cd16964	YqgF	coord: 49..183 e-value: 6.52025E-31 score: 107.573
None	No IPR available	PANTHER	PTHR33317:SF1	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 39..191
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 47..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g221080.m01	Csor.00g221080.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000967	rRNA 5'-end processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006364	rRNA processing