Csor.00g218750 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g218750
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Cytochrome c oxidase assembly protein
Location	Csor_Chr04: 7105144 .. 7105910 (+)
RNA-Seq Expression	Csor.00g218750
Synteny	Csor.00g218750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCTCTCACTGTGCTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGGTTAGTGGTTGCTGGTACTGTTTGAAGTTTATGATTCAAAGTGATGGTGTTGCCTTCTTTAGGAGATCACTTTAATTTTCCTGTTCTGGATTTGTGATGCCTCGATGTATAACCCCGGAAAACCTGTTTTAAAATACATTGGAAAGATTCTGGACTTTGCCTTGGAAGTGGTCATCGAGTCCATGGAATTGAGATTTGAGAACCGAAAATGCTTCGAGAATGAAAATTCTGTGTGCAGTCGATTTATACCTTTCCTGGTGCTCTATTTCATATCTTGGAAAGTTCTATTTGGAGTAGACTGTTAATTAGCTATCTGCACAGCAACACTATAAATATTATCAAGATCATATTTGTTGTAATGTTTCCATGTTTGCTTTTCCATTTGATATTCAAACGTGTCGAATTTGCATTGTAGTTCAGTAAAGATATTGCAAAGGTGAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTGTCAAGAACGGGACCTATTGACGCGTATAAGCCGAAAAATATATCGTTAGAAGAAGAACTGAGGGTATTACTCTTATTCATTGCAACTCATTTGTTATGATGTTCAGATTCATCATCATATACAGCGCCTGATTGTGTTATTGATGTGTTCAGGCTTTACAAGAGAAGGTAGACATCAACAACTATGAATACAAGAGAATTCCAAAGCCCACTGATCGAACATCCTGA

mRNA sequence

ATGATCTCTCTCACTGTGCTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGTAAAGATATTGCAAAGGTGAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTGTCAAGAACGGGACCTATTGACGCGTATAAGCCGAAAAATATATCGTTAGAAGAAGAACTGAGGGCTTTACAAGAGAAGGTAGACATCAACAACTATGAATACAAGAGAATTCCAAAGCCCACTGATCGAACATCCTGA

Coding sequence (CDS)

ATGATCTCTCTCACTGTGCTTGGGGCAGTTGGTCTTGGTCATCTCTTGCAAGGAAGTAAAGATATTGCAAAGGTGAAAGATGATCAAGAATGGGAGATCACTGAGATGAGAAAAGCCCTGTCAAGAACGGGACCTATTGACGCGTATAAGCCGAAAAATATATCGTTAGAAGAAGAACTGAGGGCTTTACAAGAGAAGGTAGACATCAACAACTATGAATACAAGAGAATTCCAAAGCCCACTGATCGAACATCCTGA

Protein sequence

MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEELRALQEKVDINNYEYKRIPKPTDRTS

Homology

[Close]

BLAST of Csor.00g218750 vs. NCBI nr
Match: KAG6601168.1 (hypothetical protein SDJN03_06401, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170 bits (430), Expect = 3.87e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
          MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL
Sbjct: 1  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60

Query: 61 RALQEKVDINNYEYKRIPKPTDRTS 85
          RALQEKVDINNYEYKRIPKPTDRTS
Sbjct: 61 RALQEKVDINNYEYKRIPKPTDRTS 85

[Close]

BLAST of Csor.00g218750 vs. NCBI nr
Match: XP_022969704.1 (uncharacterized protein LOC111468648 [Cucurbita maxima] >XP_022969712.1 uncharacterized protein LOC111468648 [Cucurbita maxima] >XP_022969772.1 uncharacterized protein LOC111468648 [Cucurbita maxima] >XP_022969842.1 uncharacterized protein LOC111468648 [Cucurbita maxima])

HSP 1 Score: 170 bits (430), Expect = 1.62e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQEKVDINNYEYKRIPKPTDRTS
Sbjct: 107 RALQEKVDINNYEYKRIPKPTDRTS 131

[Close]

BLAST of Csor.00g218750 vs. NCBI nr
Match: XP_022956367.1 (uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956369.1 uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956370.1 uncharacterized protein LOC111458129 [Cucurbita moschata])

HSP 1 Score: 170 bits (430), Expect = 1.62e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQEKVDINNYEYKRIPKPTDRTS
Sbjct: 107 RALQEKVDINNYEYKRIPKPTDRTS 131

[Close]

BLAST of Csor.00g218750 vs. NCBI nr
Match: XP_023533207.1 (uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215.1 uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170 bits (430), Expect = 1.62e-52
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQEKVDINNYEYKRIPKPTDRTS
Sbjct: 107 RALQEKVDINNYEYKRIPKPTDRTS 131

[Close]

BLAST of Csor.00g218750 vs. NCBI nr
Match: XP_004142437.1 (uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_031742066.1 uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 1.89e-51
Identity = 83/85 (97.65%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQ+KVDINNYEYKRIPKPTDRTS
Sbjct: 107 RALQQKVDINNYEYKRIPKPTDRTS 131

[Close]

BLAST of Csor.00g218750 vs. ExPASy TrEMBL
Match: A0A6J1HX89 (uncharacterized protein LOC111468648 OS=Cucurbita maxima OX=3661 GN=LOC111468648 PE=3 SV=1)

HSP 1 Score: 170 bits (430), Expect = 7.86e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQEKVDINNYEYKRIPKPTDRTS
Sbjct: 107 RALQEKVDINNYEYKRIPKPTDRTS 131

[Close]

BLAST of Csor.00g218750 vs. ExPASy TrEMBL
Match: A0A6J1GWL5 (uncharacterized protein LOC111458129 OS=Cucurbita moschata OX=3662 GN=LOC111458129 PE=3 SV=1)

HSP 1 Score: 170 bits (430), Expect = 7.86e-53
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQEKVDINNYEYKRIPKPTDRTS
Sbjct: 107 RALQEKVDINNYEYKRIPKPTDRTS 131

[Close]

BLAST of Csor.00g218750 vs. ExPASy TrEMBL
Match: A0A1S4DWC3 (uncharacterized protein LOC103489460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489460 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 3.73e-51
Identity = 82/85 (96.47%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMR+ALSRTGPIDAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMREALSRTGPIDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQE+VDINNYEYKRIP+PTDRTS
Sbjct: 107 RALQEQVDINNYEYKRIPRPTDRTS 131

[Close]

BLAST of Csor.00g218750 vs. ExPASy TrEMBL
Match: A0A6J1CBH5 (uncharacterized protein LOC111010064 OS=Momordica charantia OX=3673 GN=LOC111010064 PE=3 SV=1)

HSP 1 Score: 161 bits (408), Expect = 1.77e-49
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGP+DAYKPKNISLEEEL
Sbjct: 47  MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPVDAYKPKNISLEEEL 106

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           RALQEKV+IN+YEYKRIPKP+ RTS
Sbjct: 107 RALQEKVNINDYEYKRIPKPSGRTS 131

[Close]

BLAST of Csor.00g218750 vs. ExPASy TrEMBL
Match: A0A067DTX0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032814mg PE=3 SV=1)

HSP 1 Score: 152 bits (384), Expect = 8.56e-46
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTV GA+GLGHLLQGSKDIAKVKDDQEWEI E RKALSRTGP+DAYKPKNISLEEEL
Sbjct: 48  MISLTVFGAIGLGHLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYKPKNISLEEEL 107

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 85
           +ALQEKVDINNYEYKRIP+P +  S
Sbjct: 108 KALQEKVDINNYEYKRIPRPNEGKS 132

[Close]

BLAST of Csor.00g218750 vs. TAIR 10
Match: AT4G14145.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-33
Identity = 67/85 (78.82%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1   MISLTVLGAVGLGHLLQGSKDIAKVKDDQEWEITEMRKALSRTGPIDAYKPKNISLEEEL 60
           MISLTV GA+GLG LLQGSKDIAKVKDDQEWEI E RKALSRTGP+DAYKPKN S+E+EL
Sbjct: 49  MISLTVFGALGLGQLLQGSKDIAKVKDDQEWEIIETRKALSRTGPVDAYKPKNTSIEDEL 108

Query: 61  RALQEKVDINNYEYKRIPKPTDRTS 86
           +A+QEKVDIN YEYK+IPK  +  S
Sbjct: 109 KAMQEKVDINTYEYKKIPKLNESKS 133

The following BLAST results are available for this feature:

BLAST of Csor.00g218750 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g218750 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6601168.1	3.87e-53	100.00	hypothetical protein SDJN03_06401, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969704.1	1.62e-52	100.00	uncharacterized protein LOC111468648 [Cucurbita maxima] >XP_022969712.1 uncharac...	[more]
XP_022956367.1	1.62e-52	100.00	uncharacterized protein LOC111458129 [Cucurbita moschata] >XP_022956368.1 unchar...	[more]
XP_023533207.1	1.62e-52	100.00	uncharacterized protein LOC111795161 [Cucurbita pepo subsp. pepo] >XP_023533215....	[more]
XP_004142437.1	1.89e-51	97.65	uncharacterized protein LOC101208712 isoform X1 [Cucumis sativus] >XP_004142438....	[more]

BLAST of Csor.00g218750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HX89	7.86e-53	100.00	uncharacterized protein LOC111468648 OS=Cucurbita maxima OX=3661 GN=LOC111468648...	[more]
A0A6J1GWL5	7.86e-53	100.00	uncharacterized protein LOC111458129 OS=Cucurbita moschata OX=3662 GN=LOC1114581...	[more]
A0A1S4DWC3	3.73e-51	96.47	uncharacterized protein LOC103489460 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CBH5	1.77e-49	94.12	uncharacterized protein LOC111010064 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A067DTX0	8.56e-46	87.06	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032814mg PE=3 SV=1	[more]

BLAST of Csor.00g218750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14145.1	2.9e-33	78.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020164	Cytochrome c oxidase assembly protein COX16	PFAM	PF14138	COX16	coord: 1..81 e-value: 1.2E-16 score: 60.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g218750.m01	Csor.00g218750.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0031966	mitochondrial membrane